Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_H16
         (400 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0122 + 18366119-18367014,18367042-18367397,18367471-18368165     23   4.8  
10_02_0085 - 5093036-5094285,5094737-5095255,5098698-5099373           26   9.5  

>01_05_0122 + 18366119-18367014,18367042-18367397,18367471-18368165
          Length = 648

 Score = 23.4 bits (48), Expect(2) = 4.8
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -3

Query: 47  AQAWGWGWR 21
           A  W WGWR
Sbjct: 496 ASVWNWGWR 504



 Score = 22.2 bits (45), Expect(2) = 4.8
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = -3

Query: 38  WGWGWRKI 15
           WGW WR I
Sbjct: 501 WGWRWRPI 508


>10_02_0085 - 5093036-5094285,5094737-5095255,5098698-5099373
          Length = 814

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 231 KILFKSFSSFRFSCQG 184
           +ILF  FS FRFS QG
Sbjct: 301 EILFNMFSQFRFSSQG 316


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,615,714
Number of Sequences: 37544
Number of extensions: 33530
Number of successful extensions: 143
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)