Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_H16
         (400 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33930.1 68417.m04815 glycine-rich protein hyphally regulated...    23   4.2  
At4g34300.1 68417.m04875 glycine-rich protein similar to auxin r...    23   7.2  

>At4g33930.1 68417.m04815 glycine-rich protein hyphally regulated
          protein, Candida albicans, PIR2:S58135
          Length = 343

 Score = 23.4 bits (48), Expect(2) = 4.2
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -3

Query: 41 AWGWGWRKIG 12
          +WGWGW   G
Sbjct: 69 SWGWGWSSDG 78



 Score = 22.2 bits (45), Expect(2) = 4.2
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -3

Query: 56 SALAQAWGWGW 24
          S  A+AW W W
Sbjct: 22 SGSAEAWSWSW 32


>At4g34300.1 68417.m04875 glycine-rich protein similar to auxin
          response factor 30 (GI:20145855) {Arabidopsis thaliana}
          Length = 313

 Score = 23.4 bits (48), Expect(2) = 7.2
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -3

Query: 41 AWGWGWRKIG 12
          +WGWGW   G
Sbjct: 65 SWGWGWSSDG 74



 Score = 21.4 bits (43), Expect(2) = 7.2
 Identities = 6/11 (54%), Positives = 6/11 (54%)
 Frame = -3

Query: 56 SALAQAWGWGW 24
          S  A AW W W
Sbjct: 21 SGSADAWSWSW 31


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,683,610
Number of Sequences: 28952
Number of extensions: 21842
Number of successful extensions: 102
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)