BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fcaL-P02_F_H15 (738 letters) Database: uniref50 1,657,284 sequences; 575,637,011 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174; Eukary... 401 e-110 UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3; ... 257 2e-67 UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4... 247 2e-64 UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3; Olig... 226 5e-58 UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1; Tr... 222 6e-57 UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole geno... 215 7e-55 UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1; Encephal... 196 4e-49 UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genom... 167 2e-40 UniRef50_Q01BA3 Cluster: Putative ribosomal protein; n=1; Ostreo... 145 9e-34 UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lambl... 143 5e-33 UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5; Euryarc... 142 6e-33 UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8; Euryarc... 133 5e-30 UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4; Archaea... 132 1e-29 UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3; Methano... 123 5e-27 UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5; Halobac... 123 5e-27 UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5; Methano... 122 7e-27 UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1; Methano... 122 9e-27 UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2; Thermof... 118 1e-25 UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1; ... 118 2e-25 UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1; Archaeo... 113 3e-24 UniRef50_Q9UXA0 Cluster: 30S ribosomal protein S3P; n=2; Thermop... 108 1e-22 UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3; Sulfolo... 106 6e-22 UniRef50_Q8LNX7 Cluster: Putative ribosomal protein S3; n=1; Zin... 103 3e-21 UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1; Staphyl... 99 1e-19 UniRef50_Q8ZWI0 Cluster: 30S ribosomal protein S3P; n=6; Pyrobac... 97 5e-19 UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4; Thermop... 96 7e-19 UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S riboso... 94 3e-18 UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2; Thermop... 94 4e-18 UniRef50_A5DF25 Cluster: Putative uncharacterized protein; n=1; ... 93 5e-18 UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivi... 91 2e-17 UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmenta... 88 2e-16 UniRef50_Q74MZ4 Cluster: 30S ribosomal protein S3P; n=2; Nanoarc... 70 7e-11 UniRef50_A7NXL5 Cluster: Chromosome chr5 scaffold_2, whole genom... 69 9e-11 UniRef50_A5ATU8 Cluster: Putative uncharacterized protein; n=1; ... 66 6e-10 UniRef50_A7QEK7 Cluster: Chromosome chr17 scaffold_85, whole gen... 66 8e-10 UniRef50_Q3LWD3 Cluster: Ribosomal protein S3; n=1; Bigelowiella... 66 1e-09 UniRef50_A6R2L3 Cluster: Predicted protein; n=1; Ajellomyces cap... 65 2e-09 UniRef50_Q9RXJ6 Cluster: 30S ribosomal protein S3; n=2; Deinococ... 64 5e-09 UniRef50_Q7MTL9 Cluster: 30S ribosomal protein S3; n=19; Bactero... 58 3e-07 UniRef50_Q12GW5 Cluster: 30S ribosomal protein S3; n=197; Bacter... 57 4e-07 UniRef50_Q6KI49 Cluster: 30S ribosomal protein S3; n=9; Mycoplas... 56 1e-06 UniRef50_A6EHQ8 Cluster: 30S ribosomal protein S3; n=1; Pedobact... 54 3e-06 UniRef50_A5B260 Cluster: Putative uncharacterized protein; n=1; ... 53 6e-06 UniRef50_O83225 Cluster: 30S ribosomal protein S3; n=1; Treponem... 51 3e-05 UniRef50_A1KB21 Cluster: 30S ribosomal protein S3; n=67; cellula... 50 5e-05 UniRef50_Q8KAH8 Cluster: 30S ribosomal protein S3; n=10; Chlorob... 50 8e-05 UniRef50_Q7UN14 Cluster: 30S ribosomal protein S3; n=3; Planctom... 49 1e-04 UniRef50_P46772 Cluster: 30S ribosomal protein S3; n=5; Thermoto... 48 2e-04 UniRef50_UPI00015BD7E8 Cluster: UPI00015BD7E8 related cluster; n... 45 0.002 UniRef50_Q6A6N2 Cluster: 30S ribosomal protein S3; n=27; Bacteri... 45 0.002 UniRef50_Q2JFH0 Cluster: 30S ribosomal protein S3; n=94; Bacteri... 44 0.003 UniRef50_P0A4C3 Cluster: 30S ribosomal protein S3; n=39; Bacteri... 44 0.004 UniRef50_Q3ZZL8 Cluster: 30S ribosomal protein S3; n=18; Bacteri... 44 0.004 UniRef50_A6NXD5 Cluster: Putative uncharacterized protein; n=1; ... 44 0.005 UniRef50_P56798 Cluster: Chloroplast 30S ribosomal protein S3; n... 44 0.005 UniRef50_P46247 Cluster: 30S ribosomal protein S3; n=3; Entomopl... 43 0.007 UniRef50_Q9PQQ4 Cluster: 30S ribosomal protein S3; n=1; Ureaplas... 42 0.012 UniRef50_Q04G79 Cluster: 30S ribosomal protein S3; n=1; Oenococc... 42 0.012 UniRef50_Q2GED3 Cluster: 30S ribosomal protein S3; n=1; Neoricke... 41 0.028 UniRef50_Q9XD30 Cluster: 30S ribosomal protein S3; n=4; Leptospi... 39 0.15 UniRef50_Q11HQ8 Cluster: 30S ribosomal protein S3; n=167; cellul... 38 0.19 UniRef50_Q20F10 Cluster: Chloroplast 30S ribosomal protein S3; n... 38 0.19 UniRef50_A0MNG0 Cluster: Putative uncharacterized protein; n=1; ... 38 0.26 UniRef50_A7R9B1 Cluster: Chromosome undetermined scaffold_3592, ... 36 0.78 UniRef50_A5AUQ8 Cluster: Putative uncharacterized protein; n=1; ... 36 0.78 UniRef50_Q6YR15 Cluster: 30S ribosomal protein S3; n=163; Firmic... 36 0.78 UniRef50_A6GSD9 Cluster: TonB, C-terminal; n=1; Limnobacter sp. ... 36 1.0 UniRef50_Q52188 Cluster: TraC precursor; n=9; root|Rep: TraC pre... 36 1.4 UniRef50_Q9U982 Cluster: Drosophila dodeca-satellite protein 1; ... 35 2.4 UniRef50_Q9XDW7 Cluster: PsbAa; n=1; Rhodopseudomonas palustris|... 29 2.8 UniRef50_UPI0000DA2268 Cluster: PREDICTED: hypothetical protein;... 34 3.2 UniRef50_Q5U794 Cluster: Signal recognition particle GTPase; n=1... 34 4.2 UniRef50_Q8EUC1 Cluster: 30S ribosomal protein S3; n=7; Mycoplas... 34 4.2 UniRef50_Q39682 Cluster: Glycine-rich protein; n=1; Daucus carot... 33 7.3 UniRef50_A0DWV1 Cluster: Chromosome undetermined scaffold_67, wh... 33 7.3 UniRef50_O84054 Cluster: Putative uncharacterized protein; n=3; ... 33 9.7 UniRef50_Q5SCB4 Cluster: Cyclin H; n=2; Ostreococcus|Rep: Cyclin... 33 9.7 UniRef50_Q5XIY2 Cluster: Transmembrane protein 56; n=8; Euteleos... 33 9.7 UniRef50_P36021 Cluster: Monocarboxylate transporter 8; n=24; Eu... 33 9.7 >UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174; Eukaryota|Rep: 40S ribosomal protein S3 - Homo sapiens (Human) Length = 243 Score = 401 bits (987), Expect = e-110 Identities = 196/234 (83%), Positives = 208/234 (88%) Frame = +2 Query: 29 MAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 208 MAV ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VL Sbjct: 1 MAVQ-ISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVL 59 Query: 209 GEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRAC 388 GEKGRRIRELT+VVQKRF PE SVELYAEKVATRGLCAIAQAESLRYKL+GGLAVRRAC Sbjct: 60 GEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRAC 119 Query: 389 YGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQ 568 YGVLRFIMESGA+GCEVVVSGKLRGQRAKSMKFVDGLMIHSGDP N YV+TA RHVLLRQ Sbjct: 120 YGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQ 179 Query: 569 GVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTXEVRSLAPAP 730 GVLGIKVKIMLPWD GK GPKKP PDH+ + EPKDE +P P E + P P Sbjct: 180 GVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEP 233 >UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3; n=4; Saccharomycetales|Rep: Likely cytosolic ribosomal protein S3 - Candida albicans (Yeast) Length = 251 Score = 257 bits (630), Expect = 2e-67 Identities = 126/212 (59%), Positives = 157/212 (74%) Frame = +2 Query: 44 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 223 +SKK+K V DGVF AELNEF TRELAE GY+GVEVR TP + E+I+ A+ TQ VLGE+GR Sbjct: 6 LSKKKKLVADGVFYAELNEFFTRELAEQGYAGVEVRKTPSKLEVIVKASNTQGVLGEQGR 65 Query: 224 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 403 RI ELTS++ KRF + + + +YAE+V RGL A QAE+L+ KL+ GL +RRA YGVLR Sbjct: 66 RIHELTSLIVKRFKLSPEGIAIYAERVEERGLSAAVQAEALKAKLLSGLPIRRAAYGVLR 125 Query: 404 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 583 F M +GA+G EVV+SGKLR RAKS K+ DG MIHSG P D+++ A RHVL+RQGVLGI Sbjct: 126 FAMGAGAKGVEVVISGKLRAARAKSQKYADGFMIHSGQPTRDFIDIAIRHVLMRQGVLGI 185 Query: 584 KVKIMLPWDQQGKNGPKKPQPDHILVTEPKDE 679 KVKIM + GP + PD + + E KDE Sbjct: 186 KVKIMKD-PAANRFGP-RALPDAVKIAEAKDE 215 >UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4; Trypanosoma|Rep: 40S ribosomal protein S3, putative - Trypanosoma brucei Length = 266 Score = 247 bits (605), Expect = 2e-64 Identities = 124/210 (59%), Positives = 156/210 (74%) Frame = +2 Query: 44 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 223 +SKKR V DGVF AEL EFL RELA+DG++GVE RVTP R+EI+I +T+T+ VLGEKGR Sbjct: 56 LSKKRMMVRDGVFYAELFEFLKRELADDGFAGVEHRVTPTRTEIVIRSTKTREVLGEKGR 115 Query: 224 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 403 RIRELT+ +Q+RFN E ++L+AE+V RGL A+AQAESLR+KL+ L VRRA G++R Sbjct: 116 RIRELTACLQQRFNYKEGKLQLFAERVEVRGLSAMAQAESLRFKLLSNLQVRRAAMGIIR 175 Query: 404 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 583 ++MESGA+GCEV + GK++GQRAKSM F DG MI SG +V+TATRH LR G +G+ Sbjct: 176 YVMESGAKGCEVTIGGKIKGQRAKSMTFRDGYMIKSGTAHKHFVDTATRHCHLRAGTIGV 235 Query: 584 KVKIMLPWDQQGKNGPKKPQPDHILVTEPK 673 VKIM P Q + PD I V EPK Sbjct: 236 NVKIMRP---QSMIEEDEVLPDVITVIEPK 262 >UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3; Oligohymenophorea|Rep: KH domain containing protein - Tetrahymena thermophila SB210 Length = 253 Score = 226 bits (552), Expect = 5e-58 Identities = 104/230 (45%), Positives = 157/230 (68%), Gaps = 2/230 (0%) Frame = +2 Query: 44 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 223 I+KK+KFV DGVF AEL+ F ++ L + GY+G+EVR TP ++EI I AT+ Q V+G +G+ Sbjct: 18 INKKKKFVADGVFNAELHSFFSKSLQDAGYAGIEVRRTPTKTEIRIKATKPQQVIGVEGK 77 Query: 224 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 403 + +ELT +QKRF + ++++AE + +GLCA AQ E++ YKL+ + VR A +++ Sbjct: 78 KHKELTQFLQKRFGYSDDQIQIWAEPIKFKGLCASAQVEAMNYKLLKDVPVRLAANYIIK 137 Query: 404 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 583 +++ GA+GCE+++SGKL+ QRAK+MKF G MI +G P NDY++ A RHV +QG++G+ Sbjct: 138 SVIQDGAKGCEIIISGKLKQQRAKTMKFKQGYMICTGQPKNDYIDVAVRHVFFKQGIMGV 197 Query: 584 KVKIMLPWDQQ--GKNGPKKPQPDHILVTEPKDEPVPLEPTXEVRSLAPA 727 KVKIMLP++ K G K P PD++++ PK E V PA Sbjct: 198 KVKIMLPYEPNPAKKFGVKTPIPDNVIIHPPKQITDDKEIRTAVEQQQPA 247 >UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1; Trichomonas vaginalis G3|Rep: Ribosomal protein S3, putative - Trichomonas vaginalis G3 Length = 216 Score = 222 bits (543), Expect = 6e-57 Identities = 103/216 (47%), Positives = 146/216 (67%) Frame = +2 Query: 29 MAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 208 M +K R+ + G+F AELNE LTREL ++GY G EVR TP R+EIII A T+ + Sbjct: 1 MKAQRCTKVRRIIETGLFYAELNELLTRELTKEGYGGCEVRQTPTRTEIIIKAANTKEFV 60 Query: 209 GEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRAC 388 GRR++E+ ++QKR+ + E S+E++ +++ +GL A+ Q ESLRYKLI + RRA Sbjct: 61 DNHGRRLQEVRMMIQKRWRLKEDSLEIFIDRIQRKGLSALNQLESLRYKLIARIPARRAA 120 Query: 389 YGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQ 568 Y ++RF+M++GARGCEV +SGKLRG RA + K+ +G M+ SGD +V A H+ ++Q Sbjct: 121 YSIIRFVMDAGARGCEVAISGKLRGARASTSKYKEGYMVKSGDVTKQFVTQAVGHIPMKQ 180 Query: 569 GVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKD 676 +GI+V IML D G +GPK+ QPD I V E KD Sbjct: 181 ATIGIRVLIMLAQDPSGISGPKESQPDVIKVHEAKD 216 >UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_1, whole genome shotgun sequence - Vitis vinifera (Grape) Length = 617 Score = 215 bits (526), Expect = 7e-55 Identities = 124/212 (58%), Positives = 141/212 (66%) Frame = +2 Query: 35 VNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGE 214 V +SKKRKF DGVF A LNE LTREL E+GYSG EVRVTP+ +EIII AT+T +VLGE Sbjct: 2 VTQMSKKRKFAVDGVFFAGLNEVLTRELVENGYSGDEVRVTPMCTEIIIRATQTHNVLGE 61 Query: 215 KGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYG 394 KG++I+ELTSVVQKRF E SVEL AEKV RG AIAQAESLRYKL+GGLA+ Sbjct: 62 KGKKIKELTSVVQKRFEFLENSVELCAEKVNNRGFYAIAQAESLRYKLLGGLAM------ 115 Query: 395 VLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGV 574 L QRAKSMKF DG +I SG P DY++ A RHV LRQGV Sbjct: 116 --------------------LCAQRAKSMKFKDGYLISSGQPVKDYIDLAVRHV-LRQGV 154 Query: 575 LGIKVKIMLPWDQQGKNGPKKPQPDHILVTEP 670 LGIKVKIM WD +GK P PD + + P Sbjct: 155 LGIKVKIMFNWDPKGKQSLTTPLPDLVTIQTP 186 >UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1; Encephalitozoon cuniculi|Rep: 40S ribosomal protein S3 - Encephalitozoon cuniculi Length = 228 Score = 196 bits (479), Expect = 4e-49 Identities = 89/206 (43%), Positives = 136/206 (66%) Frame = +2 Query: 59 KFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIREL 238 +F+ +G+ AEL EF + L +G+S +E+R+ +II+ + +GEK R+R+ Sbjct: 21 RFMKNGLMNAELKEFFEKALVNEGFSTMELRMQETPIKIILKVAKPHEAIGEKKFRLRQF 80 Query: 239 TSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMES 418 + +R +P++SVE+ EKV +GLCA+ QA +R K++GG+ RRA L+ + Sbjct: 81 QHLAAQRLEVPDESVEIVVEKVHEKGLCALIQANFIREKILGGVQYRRAVNMALKTARHA 140 Query: 419 GARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIM 598 A+GC+++VSGKL+GQRAKS+KF DG++IHSGD DY+NT V +QGV+GI+V+IM Sbjct: 141 KAQGCQIIVSGKLKGQRAKSVKFQDGVLIHSGDAVKDYINTGYATVETKQGVIGIQVRIM 200 Query: 599 LPWDQQGKNGPKKPQPDHILVTEPKD 676 LP+D +G GP P PD I + EP + Sbjct: 201 LPYDPEGVLGPNYPLPDRITILEPSE 226 >UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr5 scaffold_2, whole genome shotgun sequence - Vitis vinifera (Grape) Length = 243 Score = 167 bits (407), Expect = 2e-40 Identities = 91/154 (59%), Positives = 108/154 (70%) Frame = +2 Query: 170 EIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLR 349 EIII AT+TQ+VLG+KGR+IRELTSVVQKRF E +VELYAEK R AIAQAESLR Sbjct: 101 EIIIHATQTQNVLGKKGRKIRELTSVVQKRFEFLENNVELYAEKFNNRVFYAIAQAESLR 160 Query: 350 YKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCND 529 +KL+GGL VRRA YGVL F+MESG +GCEV+ +I SG P D Sbjct: 161 FKLLGGLVVRRAGYGVLSFVMESGTKGCEVI----------------GWYIISSGQPVKD 204 Query: 530 YVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGP 631 Y+N+ RHVLL+QGVL IKVKI++ QG+ GP Sbjct: 205 YINSVVRHVLLKQGVLSIKVKIIVRLGSQGQAGP 238 >UniRef50_Q01BA3 Cluster: Putative ribosomal protein; n=1; Ostreococcus tauri|Rep: Putative ribosomal protein - Ostreococcus tauri Length = 145 Score = 145 bits (352), Expect = 9e-34 Identities = 66/108 (61%), Positives = 84/108 (77%) Frame = +2 Query: 374 VRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 553 VR ACYGVLR+IMESGA+G EVVVSGKLRGQRAK+MKF DG MI SG+P DY+ + TRH Sbjct: 30 VRSACYGVLRYIMESGAKGAEVVVSGKLRGQRAKAMKFKDGYMISSGNPVRDYIVSCTRH 89 Query: 554 VLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 697 LLRQG +G++VKIML D +G++GP P PD +++ PK++ +P Sbjct: 90 ALLRQGTIGMRVKIMLDHDPKGRDGPSTPIPDTVVIHTPKEDEDMAKP 137 >UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lamblia ATCC 50803|Rep: GLP_157_11435_12088 - Giardia lamblia ATCC 50803 Length = 217 Score = 143 bits (346), Expect = 5e-33 Identities = 68/182 (37%), Positives = 113/182 (62%) Frame = +2 Query: 59 KFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIREL 238 K++ D + +AEL+EF +REL + GY+ + T +II + V+G+ R+ ++ Sbjct: 16 KYLNDCIMEAELHEFFSRELVDAGYASCSLCRTIDSICVIIQCAEPEVVMGDNHYRLHKI 75 Query: 239 TSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMES 418 ++ RF ++ ++ +K+ RGL A ++LR KL + +RRA Y ++R M + Sbjct: 76 EYLLAGRFMCDPKNFNIWVDKIIKRGLSAEIMVDNLRAKLEEAMPIRRAAYSIIRTAMRA 135 Query: 419 GARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIM 598 GA GCEV+V+GKLR QRA++ KF +G +I +G P ++ ATRH+ +RQGV+G+KV+I Sbjct: 136 GAAGCEVIVAGKLRAQRARANKFKEGCLISTGHPKRIFLAEATRHIKMRQGVIGVKVRIY 195 Query: 599 LP 604 P Sbjct: 196 NP 197 >UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5; Euryarchaeota|Rep: 30S ribosomal protein S3P - Pyrococcus furiosus Length = 210 Score = 142 bits (345), Expect = 6e-33 Identities = 74/184 (40%), Positives = 112/184 (60%) Frame = +2 Query: 53 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 232 +R F+ + V + ++EFL +EL GY G++++ TP+ +++II A V+G GRRIR Sbjct: 4 ERYFIREAVREMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63 Query: 233 ELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 412 ELT +++K+F + +E+ E++ L A QA L L G+ RRA Y LR IM Sbjct: 64 ELTRILEKQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAALRAIM 121 Query: 413 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVK 592 +GARG E+ +SGKL G+RAKS++F G + G+P V+ LL+ GV+G+KV Sbjct: 122 NNGARGVEIRLSGKLTGERAKSIRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVA 181 Query: 593 IMLP 604 IM P Sbjct: 182 IMPP 185 >UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8; Euryarchaeota|Rep: 30S ribosomal protein S3P - Methanosarcina acetivorans Length = 318 Score = 133 bits (321), Expect = 5e-30 Identities = 77/236 (32%), Positives = 130/236 (55%), Gaps = 10/236 (4%) Frame = +2 Query: 53 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 232 ++KFV DG KA ++E+ +L+ GY G+E+ TP+ ++I+I + + V+G+ G+ IR Sbjct: 4 EKKFVNDGYVKASMDEYFAEQLSRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIR 63 Query: 233 ELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 412 +LT V ++++ ++ A++V L A A L + G R+A + LR +M Sbjct: 64 KLTRDVANKYSLENPQID--AQEVKRPELNAQMMASRLAASIERGWYFRKAGHNTLRAVM 121 Query: 413 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVK 592 +GA GCEVV+SGKL G R++ KFVDG + HSG+P + V+ + + G LG KV+ Sbjct: 122 NAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGNPVEEVVDEGFAVAVKKLGTLGCKVR 181 Query: 593 I-----MLPWDQQGKNGPKKPQPDHILVTEPKDEP-----VPLEPTXEVRSLAPAP 730 I +LP + + + +P +P ++P P + + R+ APAP Sbjct: 182 IIQPGVVLPDSYKVRESVEVEEPAEKPAEKPAEKPAEKAAAPKKEAAKARAPAPAP 237 >UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4; Archaea|Rep: 30S ribosomal protein S3P - Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) Length = 234 Score = 132 bits (318), Expect = 1e-29 Identities = 74/216 (34%), Positives = 119/216 (55%), Gaps = 1/216 (0%) Frame = +2 Query: 53 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 232 ++KF+ DGV + +FLT+EL GY G+++ TP+ +++ I A + V+G+ G+++R Sbjct: 4 EKKFITDGVRNVRVEKFLTKELKRAGYGGMDIARTPLGTQVTIFAEKPGIVIGKGGKQVR 63 Query: 233 ELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 412 +LT + ++I VE+ ++V A AE L L G R+A +R IM Sbjct: 64 QLTQDLATDYDIESPQVEV--QQVQNPNFNAQIMAERLANALERGWYFRKAGSSTIRRIM 121 Query: 413 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVK 592 ESGA GCEV+V+GKL G R+++ KF +G + H G+P V + + G +G++VK Sbjct: 122 ESGALGCEVIVAGKLTGSRSRTQKFTEGYIKHCGEPSETIVEKGYALAIKKLGTIGVQVK 181 Query: 593 IMLPWDQQGKNGPKKPQPDHILVTEPKDEPV-PLEP 697 I+ P + P +L EPK P P+EP Sbjct: 182 IVPP-------DARLPDAFDVLEPEPKKAPAEPIEP 210 >UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3; Methanobacteriaceae|Rep: 30S ribosomal protein S3P - Methanobacterium thermoautotrophicum Length = 258 Score = 123 bits (296), Expect = 5e-27 Identities = 69/218 (31%), Positives = 117/218 (53%) Frame = +2 Query: 53 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 232 ++ FV +G+ + ++E+L +EL GY G++V+VTP+ + +++ A R V+G G+ +R Sbjct: 3 EKDFVVEGLRRTRIDEYLEKELERAGYGGMDVQVTPMGTMVVVYAERPGMVIGRGGKTVR 62 Query: 233 ELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 412 +T ++ +F++ VE+ ++V L A + L G+ RR Y +R IM Sbjct: 63 AITQKLKNKFDLENPQVEV--KEVDVPELNPKIMAHKIAAMLQRGMHFRRVAYTTMRRIM 120 Query: 413 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVK 592 +GA+G EV +SGK+RG R+ + KF DG + G+P +V V L+ GVLG+ V+ Sbjct: 121 AAGAQGVEVTISGKIRGARSATAKFTDGYIKKCGEPSVKHVREGFATVQLKPGVLGVYVR 180 Query: 593 IMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTXE 706 IM P PD + + +P+ P E E Sbjct: 181 IM---------PPDVVLPDKVEIEDPRVTETPAEEASE 209 >UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5; Halobacteriaceae|Rep: 30S ribosomal protein S3P - Haloarcula marismortui (Halobacterium marismortui) Length = 304 Score = 123 bits (296), Expect = 5e-27 Identities = 61/187 (32%), Positives = 116/187 (62%) Frame = +2 Query: 44 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 223 ++ +++F+ DG+ + +++EF EL GY G++V TP+ ++I++ A + V+G+ G+ Sbjct: 1 MADEQQFIEDGLQRTQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60 Query: 224 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 403 IR++T+ ++ RFN+ + V++ ++V L A A+ L L G R+A + + Sbjct: 61 NIRKITTELEDRFNLDDPQVDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118 Query: 404 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 583 IMESGA G E+V+SGK+ G R++ KF G + H+G+P + V++ +++ G +G+ Sbjct: 119 RIMESGALGAEIVLSGKVTGARSRVEKFNRGYVKHNGEPAEEIVDSGVGVAVMKLGTIGV 178 Query: 584 KVKIMLP 604 +VKI+ P Sbjct: 179 RVKIIPP 185 >UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5; Methanococcus|Rep: 30S ribosomal protein S3P - Methanococcus maripaludis Length = 211 Score = 122 bits (295), Expect = 7e-27 Identities = 59/184 (32%), Positives = 105/184 (57%) Frame = +2 Query: 53 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 232 +R FVG+ V + ++E+ +L GYS ++ + TPI + I + A + V+G KG+ ++ Sbjct: 3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDFKKTPIGTRITVFAEKPGFVIGRKGKMVK 62 Query: 233 ELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 412 ELT + +++ +E+ ++V L + L G+ R+ + +R +M Sbjct: 63 ELTETLATEYSVKNPQIEV--KQVENPDLDPAVVGHKIASSLERGMHFRKTAHSAIRRVM 120 Query: 413 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVK 592 SGA+G ++VSGKL G+R+++ KF+DG M H G+P VN + + L+ G++G+ VK Sbjct: 121 GSGAKGVAIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGIVGVTVK 180 Query: 593 IMLP 604 IM P Sbjct: 181 IMRP 184 >UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1; Methanopyrus kandleri|Rep: 30S ribosomal protein S3P - Methanopyrus kandleri Length = 227 Score = 122 bits (294), Expect = 9e-27 Identities = 66/193 (34%), Positives = 109/193 (56%) Frame = +2 Query: 26 IMAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 205 +M N+ +KFV G+ K EL+E+L EL GY G+ ++ P ++II R Sbjct: 2 VMYGENVPVHKKFVQYGMLKTELDEYLEEELGRAGYGGMRLQRVPNATKIIAYVERPAIA 61 Query: 206 LGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRA 385 +G +GR IR + VQ+RF + + V + +++ + L A L L G+ RRA Sbjct: 62 IGRRGRNIRRVEEEVQERFPLLGR-VSIEVKELPSPELNPRVVARRLASALERGIHFRRA 120 Query: 386 CYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLR 565 YG LR IM +GA+G +++SGKL G RA++ KF++G + + G+P ++Y+ + + Sbjct: 121 AYGALRRIMNAGAKGAMIILSGKLIGARARTEKFMEGAVKYCGEPGDEYMIEGYVQAVTK 180 Query: 566 QGVLGIKVKIMLP 604 G +G+ V+IM P Sbjct: 181 PGAIGVTVRIMPP 193 >UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2; Thermofilum pendens Hrk 5|Rep: 30S ribosomal protein S3P - Thermofilum pendens (strain Hrk 5) Length = 202 Score = 118 bits (285), Expect = 1e-25 Identities = 66/183 (36%), Positives = 102/183 (55%) Frame = +2 Query: 56 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 235 RK + G+ LNE+L R+L Y + TPI +++I+ A V+G KG I+ Sbjct: 6 RKVISQGLQYMMLNEYLQRQLVRANYVHAQFFKTPIGTKVIVYAGVPGLVIGRKGANIKA 65 Query: 236 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 415 + V+++ F I +++ +V + L A A + L+ G+ RRA L IM Sbjct: 66 IAEVLEREFGIENPQIDVV--EVPNQDLNAKIMAYRVARALVRGVRFRRAALVALNRIMA 123 Query: 416 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 595 +GARG E+V+SGKL QR ++ KF G + SG+P + V+ A HVLL+ G+ G+KV+I Sbjct: 124 AGARGAEIVISGKLTSQRHRTEKFTRGYVPKSGEPGEELVDEAIVHVLLKLGMYGVKVRI 183 Query: 596 MLP 604 M P Sbjct: 184 MKP 186 >UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1; Ignicoccus hospitalis KIN4/I|Rep: SSU ribosomal protein S3P - Ignicoccus hospitalis KIN4/I Length = 241 Score = 118 bits (283), Expect = 2e-25 Identities = 74/226 (32%), Positives = 126/226 (55%), Gaps = 3/226 (1%) Frame = +2 Query: 29 MAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 208 M+V + K+ F+ + + +++E+L + GYS VE++ TP+ + +II A R+ +++ Sbjct: 1 MSVAKKNIKKYFLEQALTQVKVDEYLAYKFHSVGYSKVELQKTPMGTRVIIYAERSGAII 60 Query: 209 GEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRAC 388 G +G+ I+++T V+++ F IP V + KV L A A L L G RRA Sbjct: 61 GRRGQTIKQITKVLEEWFGIPNPQVTVV--KVEEPELDARVMAFRLANALQRGFHFRRAA 118 Query: 389 YGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQ 568 Y LR IM +GA G +V VSGKLRG+RA+ K++ G + SG+ + A HVLL+ Sbjct: 119 YTTLRRIMGAGAIGAQVKVSGKLRGERARFEKYIAGKVYKSGNQVVRLTDRAIAHVLLKV 178 Query: 569 GVLGIKVKIMLPWDQQGKNGP---KKPQPDHILVTEPKDEPVPLEP 697 GV G++V I +++ + K P+ + +V + ++E +P Sbjct: 179 GVEGVEVIISKKSEEERPDDEVRIKSPEEVNEIVQKIREEMQQTQP 224 >UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1; Archaeoglobus fulgidus|Rep: 30S ribosomal protein S3P - Archaeoglobus fulgidus Length = 229 Score = 113 bits (273), Expect = 3e-24 Identities = 66/184 (35%), Positives = 103/184 (55%) Frame = +2 Query: 53 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 232 +RKFV + + K + E++ E+ G+ GV++ TP+ +++ + R V+G+ GRRI+ Sbjct: 4 ERKFVQERLKKLMVKEWIKDEVRSAGFGGVDILRTPLGTQVTLFVERPGLVIGKGGRRIK 63 Query: 233 ELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 412 LT + K F I V + ++V A A L L G RRA Y L IM Sbjct: 64 ALTEKL-KDFGIENPQVSV--DEVEKPEFNAQLMASLLARALERGWYFRRAGYRFLYRIM 120 Query: 413 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVK 592 E+GA+GCE+ +SGKL +RA++ KFV G ++H+GDP V + + GVLG+ V+ Sbjct: 121 EAGAKGCEIEISGKLVSERARTEKFVAGTIVHTGDPAESMVQKGFDIAIKKLGVLGVSVR 180 Query: 593 IMLP 604 I+ P Sbjct: 181 IIPP 184 >UniRef50_Q9UXA0 Cluster: 30S ribosomal protein S3P; n=2; Thermoprotei|Rep: 30S ribosomal protein S3P - Sulfolobus solfataricus Length = 229 Score = 108 bits (260), Expect = 1e-22 Identities = 65/206 (31%), Positives = 106/206 (51%), Gaps = 2/206 (0%) Frame = +2 Query: 53 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 232 KR F+ + K +++E+L ++ Y+GVEV TPI + +II A R ++G GR I+ Sbjct: 5 KRYFLEKSIVKVKIDEYLAKQYYNAEYAGVEVLKTPIGTRVIIYAGRPSMIIGRGGRNIK 64 Query: 233 ELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 412 +L + +K F + + + V L A A L L G RRA + +R IM Sbjct: 65 QLAQIFEKVFGLENPQITI--TNVENPELNARVMAFRLAIALEKGYHFRRAAFISMRRIM 122 Query: 413 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVK 592 +GA G E+++SGKL +RA+ K +G++ SG ++ A +L+ G+ G++V Sbjct: 123 NAGALGAEIIISGKLTTERARYEKLKEGIVYKSGQQLEKMIDRAIAIAMLKPGIFGVEVV 182 Query: 593 IMLPWDQQGK-NGPKKPQ-PDHILVT 664 I P + K N + P P + VT Sbjct: 183 ITKPLKIEDKINLKESPSVPQEVSVT 208 >UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3; Sulfolobaceae|Rep: 30S ribosomal protein S3P - Sulfolobus acidocaldarius Length = 231 Score = 106 bits (254), Expect = 6e-22 Identities = 63/184 (34%), Positives = 97/184 (52%) Frame = +2 Query: 53 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 232 KR F+ K ++E+L ++ Y+GVE+ TPI + +II A R ++G+ G+ I+ Sbjct: 5 KRHFLQKAAIKVMVDEYLAKQFYNAEYAGVEIVKTPIGTRVIIYAGRPPLIIGKGGKTIK 64 Query: 233 ELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 412 +L V++K F + + + A + L A A L L G RRA + +R IM Sbjct: 65 QLAQVLEKFFGLENPQITVTAAE--NPELNARVMAFRLAIALEKGYHFRRAAFITIRRIM 122 Query: 413 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVK 592 SGA G EV+VSGKL +RAK K +G + SG ++ A +L+ GV G++V Sbjct: 123 SSGAVGAEVIVSGKLTSERAKYEKLKEGTVYKSGQQLEKIIDRAIGIAMLKPGVYGVEVV 182 Query: 593 IMLP 604 I P Sbjct: 183 ITKP 186 >UniRef50_Q8LNX7 Cluster: Putative ribosomal protein S3; n=1; Zinnia elegans|Rep: Putative ribosomal protein S3 - Zinnia elegans (Zinnia) Length = 143 Score = 103 bits (248), Expect = 3e-21 Identities = 46/70 (65%), Positives = 55/70 (78%) Frame = +2 Query: 464 QRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQ 643 QRAKSMKF DG M+ SG P +Y+++A RHVLLRQGVLGIKVKIML WD GK GPK P Sbjct: 2 QRAKSMKFKDGYMVSSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPTGKLGPKTPL 61 Query: 644 PDHILVTEPK 673 PD++++ PK Sbjct: 62 PDNVVIHMPK 71 >UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1; Staphylothermus marinus F1|Rep: 30S ribosomal protein S3P - Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) Length = 224 Score = 98.7 bits (235), Expect = 1e-19 Identities = 69/228 (30%), Positives = 114/228 (50%), Gaps = 4/228 (1%) Frame = +2 Query: 53 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 232 K F+ + K L+EFL + GY+G+E+ TP ++I A ++G G IR Sbjct: 7 KSYFIDYSLKKVMLDEFLANYFKDAGYAGMELYKTPTGYRVVIYAEYPGRIIGRGGSIIR 66 Query: 233 ELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 412 +L +++Q F + ++V + V L A A + L + RR +LR +M Sbjct: 67 KLMTIMQTHFGL--ENVNITVSPVPDPDLNARIVAFRIVRALEKEIPYRRVAMAMLRRVM 124 Query: 413 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVK 592 E+GA G E+++SGKLR +RA+ K G + +GD + V+ A LL++GV G++V Sbjct: 125 EAGAVGAEIIISGKLRSERARYEKLKAGRIYKAGDMVDYVVDRAVGKALLKRGVYGVEVV 184 Query: 593 IMLPWDQQGKNGPKKPQPDHILVTEPKDEP----VPLEPTXEVRSLAP 724 I+ P KP PD++ + K E +P+E S++P Sbjct: 185 IVRP--------HLKP-PDYVEIKSVKPEELADLIPVEKEETNESISP 223 >UniRef50_Q8ZWI0 Cluster: 30S ribosomal protein S3P; n=6; Pyrobaculum|Rep: 30S ribosomal protein S3P - Pyrobaculum aerophilum Length = 218 Score = 96.7 bits (230), Expect = 5e-19 Identities = 53/181 (29%), Positives = 96/181 (53%), Gaps = 1/181 (0%) Frame = +2 Query: 56 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 235 +K + + K + EFL L++ GY E+ TP+ + I+I A R ++G KG ++E Sbjct: 12 KKILEENKKKWMIKEFLEYRLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKE 71 Query: 236 LTSVVQKRFNIPEQSVELY-AEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 412 +++++ + + +++ K+ + A + + G+ RR + +R +M Sbjct: 72 ISNILTTKLGVENPQIDVIDISKIEAPEMFPKVVAYRIANAMAKGVRFRRVMFVAIRQLM 131 Query: 413 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVK 592 E+GA+G E+VVSGKL +RA+ K G + G + V A HVLL+ G+ GI+V+ Sbjct: 132 EAGAKGFEIVVSGKLSTERARFEKQTYGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVR 191 Query: 593 I 595 I Sbjct: 192 I 192 >UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4; Thermoplasmatales|Rep: 30S ribosomal protein S3P - Thermoplasma acidophilum Length = 225 Score = 96.3 bits (229), Expect = 7e-19 Identities = 51/185 (27%), Positives = 102/185 (55%) Frame = +2 Query: 50 KKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRI 229 K+RKF+ + V + + E++ +E G+ + ++ TP + I + R V+G +G ++ Sbjct: 2 KERKFINEAVKRLLVCEYVVKETENAGFGNMVMKRTPFGTNITLYVNRPGLVIGRRGSKV 61 Query: 230 RELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFI 409 +++T ++K++ I +E+ + V L A+ + L G + R+A L Sbjct: 62 QQMTDTLEKKYGIETPQIEV--KDVKDPDLNPSVIAKKIALSLEKGWSYRKAGNTSLNRT 119 Query: 410 MESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 589 +++GA+G + +SGK+ G+RA+ KF+ G + +SG+P + + T L+ G+LG+ V Sbjct: 120 IQAGAKGVLIKISGKISGERARYQKFIYGNVKYSGEPGSKGMITGFSTAKLKVGILGVTV 179 Query: 590 KIMLP 604 KI+ P Sbjct: 180 KILNP 184 >UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S ribosomal protein S3; n=1; Canis lupus familiaris|Rep: PREDICTED: similar to 40S ribosomal protein S3 - Canis familiaris Length = 161 Score = 94.3 bits (224), Expect = 3e-18 Identities = 45/57 (78%), Positives = 51/57 (89%) Frame = +2 Query: 47 SKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEK 217 SKKR+FV DG+F+AELNEFLTRELAEDG S VEVRVTP + EIII+ TRTQ+VLGEK Sbjct: 6 SKKRQFVADGIFRAELNEFLTRELAEDGDSRVEVRVTPTKPEIIILTTRTQNVLGEK 62 Score = 87.8 bits (208), Expect = 2e-16 Identities = 43/69 (62%), Positives = 50/69 (72%) Frame = +2 Query: 407 IMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIK 586 + ESGA+G E +VSGKL+GQRAKS KFVD MIHS D N YV+T+ HVLLRQGVLG K Sbjct: 80 VQESGAKGYEAMVSGKLQGQRAKSAKFVDDSMIHSRDCVNHYVDTSVHHVLLRQGVLGSK 139 Query: 587 VKIMLPWDQ 613 + P Q Sbjct: 140 CRSCFPGTQ 148 >UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2; Thermoprotei|Rep: 30S ribosomal protein S3P - Cenarchaeum symbiosum Length = 261 Score = 93.9 bits (223), Expect = 4e-18 Identities = 69/220 (31%), Positives = 109/220 (49%), Gaps = 6/220 (2%) Frame = +2 Query: 89 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 268 +L EFL + + G+SGVEV P ++I + TR V+G KG IRELT ++K F++ Sbjct: 16 KLREFLRENIKDSGFSGVEVEKNPRGTKITLHVTRPGIVIGRKGVGIRELTERLEKDFDL 75 Query: 269 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME-SGARGCEVVV 445 V++ +++ T L + + G A RRA ++ IME A G ++ + Sbjct: 76 KSPQVDV--KEIETPELYPGVMCNRMASHIERGTAFRRATMWTIQQIMEKKDAMGVQITI 133 Query: 446 SGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKN 625 SGKLRG R+ K G++ +G + V HV G++GI+++I D+ K+ Sbjct: 134 SGKLRGDRSAFEKHTSGILPRAGHYADVIVLDDVVHVKTPMGLIGIRIRIARR-DKFRKD 192 Query: 626 GPKKPQPDHILVTEP-----KDEPVPLEPTXEVRSLAPAP 730 K + D + +P KDE P T E + A AP Sbjct: 193 FEMKAEKDVVPAPKPEHHDVKDETDPSAGT-EAKDGAAAP 231 >UniRef50_A5DF25 Cluster: Putative uncharacterized protein; n=1; Pichia guilliermondii|Rep: Putative uncharacterized protein - Pichia guilliermondii (Yeast) (Candida guilliermondii) Length = 278 Score = 93.5 bits (222), Expect = 5e-18 Identities = 60/210 (28%), Positives = 104/210 (49%) Frame = -3 Query: 679 LVLGLCHQDXXXXXXXXXXXXXXVPRQHDFDLDS*YSLSEKHMSGSSVDVIITRVSRVDH 500 L+LGL QD V H+ D D+ +LS +H+S +V+ ++ ++RVDH Sbjct: 57 LILGLGDQDSIGQSLRANSGGSWV--LHNLDSDTQNTLSHQHVSDGNVNKVVGWLTRVDH 114 Query: 499 ESIYKLH*FGTLTTQLARYNNFTTTGTRFHDETENTIASTTYSETSDKLVS*RFGLGDSA 320 E++ L G+ ++Q +N T T H ++++T+ +++ +T +L FGL S Sbjct: 115 ETVRVLLRLGSSSSQFTGDDNLHTLSTSSHGKSQHTVGGSSHWQTVQQLGFQGFGLDSSG 174 Query: 319 KTTSSHLFSIQFYRLLWNVESLLYYGSQLTDSASFLSEHTLCPGGHNNDLRADGSDPHFH 140 +T+ + +ESL G QL DS S S++TL G +N+L+ + Sbjct: 175 QTSLLDSLGVDDNSFRRQLESLDNQGGQLVDSTSLFSQNTLGVGSLDNNLQLGWGLSDLN 234 Query: 139 AGVAVLGQLPSEELIEFRLENPISNKFSLL 50 GV + Q EE ++ +E+ IS + S L Sbjct: 235 TGVTLFSQFSGEEFVQLGVEDTISYQLSFL 264 >UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivirga maquilingensis IC-167|Rep: Ribosomal protein S3-like - Caldivirga maquilingensis IC-167 Length = 226 Score = 91.5 bits (217), Expect = 2e-17 Identities = 50/209 (23%), Positives = 109/209 (52%) Frame = +2 Query: 56 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 235 ++ + D K + E+L L + Y ++ T + + I+I+A + ++G KG++++ Sbjct: 3 KRIIDDNKKKWMIKEYLNIALTRNRYVDSIIQRTTLGTRIVIIAEKKNRIIGRKGQQVKA 62 Query: 236 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 415 L +++ +FN+ +++ E +A + + G+ RRA LR + E Sbjct: 63 LADILKSKFNLDNVVIDVIQEPHPEYNARLVALR--IADAMAKGIRFRRAAIIALRQLQE 120 Query: 416 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 595 + +G EV++SGKL +R++ K+ G++I +G + V A VLL+ G+ ++V++ Sbjct: 121 ANVQGAEVIISGKLTTERSRFEKYTTGIVIKAGQDALEKVQEAVIPVLLKPGIFSVRVRV 180 Query: 596 MLPWDQQGKNGPKKPQPDHILVTEPKDEP 682 LP D + + + P+ + V + +++P Sbjct: 181 -LPPDAKLSDRFEVKSPEEVQVKQIENKP 208 >UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmental samples|Rep: Ribosomal protein S3 - uncultured marine group II euryarchaeote DeepAnt-JyKC7 Length = 307 Score = 87.8 bits (208), Expect = 2e-16 Identities = 52/183 (28%), Positives = 91/183 (49%) Frame = +2 Query: 56 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 235 R F+ V + + E+L RE G+ G+E TP +++ + A + V+G +G+ I E Sbjct: 9 RTFINRNVERHMVREYLLRETERAGFGGLEFNRTPEGTKVTLSAEQVGRVIGRRGKVIHE 68 Query: 236 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 415 L ++ F + +E+ ++ L A A L L G RRA + + IM+ Sbjct: 69 LQYRLKSDFKLENPRLEV--NEIEEPRLNAQVMASRLASSLERGWFFRRAGHSTAQNIMD 126 Query: 416 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 595 +GARGC +++SGK+ G R + KF G + G+ +++ + + G +G V+I Sbjct: 127 AGARGCLIILSGKISGPRHRVQKFQQGHIKFCGETALQFMDEGFSTAVKKLGTVGCTVRI 186 Query: 596 MLP 604 M P Sbjct: 187 MRP 189 >UniRef50_Q74MZ4 Cluster: 30S ribosomal protein S3P; n=2; Nanoarchaeum equitans|Rep: 30S ribosomal protein S3P - Nanoarchaeum equitans Length = 230 Score = 69.7 bits (163), Expect = 7e-11 Identities = 54/184 (29%), Positives = 87/184 (47%), Gaps = 1/184 (0%) Frame = +2 Query: 56 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 235 RKF+ + EF+ L S V +R TPI + +II + R + + E R Sbjct: 7 RKFIQNAKLTVFSQEFIRLYLRGANVSKVIIRQTPIVNRVIIYSARPKMISEE---RKAH 63 Query: 236 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGL-AVRRACYGVLRFIM 412 L +++ +F + + +E+ + L A AE L + + A RR L IM Sbjct: 64 LAKLLELKFGLEKPVIEVLP--IENPNLDAHVIAERLAMGIERNIRAYRRLAQRYLETIM 121 Query: 413 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVK 592 +GA G E+V++G+L GQR K+ +F G + +G ++ A L+ GV GI V Sbjct: 122 NAGAIGAEIVIAGRLSGQRGKTWRFKAGNLRKTGTIGQFELDRAFNIAYLKPGVAGIHVT 181 Query: 593 IMLP 604 I+ P Sbjct: 182 ILKP 185 >UniRef50_A7NXL5 Cluster: Chromosome chr5 scaffold_2, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr5 scaffold_2, whole genome shotgun sequence - Vitis vinifera (Grape) Length = 149 Score = 69.3 bits (162), Expect = 9e-11 Identities = 33/45 (73%), Positives = 39/45 (86%) Frame = +2 Query: 113 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSV 247 +++EDGYSGV+VRVTP+R EIII ATRTQ+ LGEK RRIREL V Sbjct: 16 DISEDGYSGVQVRVTPMRMEIIIHATRTQNALGEKRRRIRELILV 60 >UniRef50_A5ATU8 Cluster: Putative uncharacterized protein; n=1; Vitis vinifera|Rep: Putative uncharacterized protein - Vitis vinifera (Grape) Length = 286 Score = 66.5 bits (155), Expect = 6e-10 Identities = 31/46 (67%), Positives = 38/46 (82%) Frame = +2 Query: 113 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVV 250 ++ EDGYS V+VRVTP+ EII+ ATRTQ+ L EKGRRIRELT V+ Sbjct: 139 DILEDGYSNVKVRVTPMGMEIIVRATRTQNALSEKGRRIRELTLVM 184 >UniRef50_A7QEK7 Cluster: Chromosome chr17 scaffold_85, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr17 scaffold_85, whole genome shotgun sequence - Vitis vinifera (Grape) Length = 514 Score = 66.1 bits (154), Expect = 8e-10 Identities = 32/45 (71%), Positives = 37/45 (82%) Frame = +2 Query: 113 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSV 247 ++ EDGYS V+VRVTP+ EIII ATRTQ+ L EKGRRIRELT V Sbjct: 406 DILEDGYSDVKVRVTPMGMEIIIRATRTQNALSEKGRRIRELTLV 450 Score = 42.7 bits (96), Expect = 0.009 Identities = 19/32 (59%), Positives = 26/32 (81%) Frame = +2 Query: 113 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 208 ++ EDGYS ++V+VT +R EIII ATRTQ+ L Sbjct: 281 DIPEDGYSDIKVKVTGMRMEIIIHATRTQNAL 312 >UniRef50_Q3LWD3 Cluster: Ribosomal protein S3; n=1; Bigelowiella natans|Rep: Ribosomal protein S3 - Bigelowiella natans (Pedinomonas minutissima) (Chlorarachnion sp.(strain CCMP 621)) Length = 262 Score = 65.7 bits (153), Expect = 1e-09 Identities = 32/120 (26%), Positives = 64/120 (53%), Gaps = 1/120 (0%) Frame = +2 Query: 242 SVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKL-IGGLAVRRACYGVLRFIMES 418 +++ F I +++ + + + + Q+ ++ + R + LRF++ S Sbjct: 112 NIISHLFFINSNKLKILYKNYKSSNISTMTQSSRMKEAFNYTNKSFRSIIFNTLRFLINS 171 Query: 419 GARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIM 598 G RGC + + G R +R K+ KF GL+ HSG ND++++ + ++ ++G LGI +KIM Sbjct: 172 GVRGCMIKLKGVYRSKRTKTFKFRRGLISHSGIQNNDWIDSDSFYLNKKRGTLGINIKIM 231 >UniRef50_A6R2L3 Cluster: Predicted protein; n=1; Ajellomyces capsulatus NAm1|Rep: Predicted protein - Ajellomyces capsulatus NAm1 Length = 151 Score = 64.9 bits (151), Expect = 2e-09 Identities = 32/46 (69%), Positives = 37/46 (80%) Frame = +2 Query: 41 NISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEII 178 +ISK+RKFV GVF A LN F RELAE+GYSGVEVRVTP ++II Sbjct: 84 DISKRRKFVVGGVFYAGLNGFFLRELAEEGYSGVEVRVTPTGTDII 129 >UniRef50_Q9RXJ6 Cluster: 30S ribosomal protein S3; n=2; Deinococcus|Rep: 30S ribosomal protein S3 - Deinococcus radiodurans Length = 249 Score = 63.7 bits (148), Expect = 5e-09 Identities = 45/171 (26%), Positives = 89/171 (52%), Gaps = 2/171 (1%) Frame = +2 Query: 89 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 268 ++ + + ++LA G + +E+ + +II A + V+G+ G I+EL +++ + Sbjct: 38 QIRQLINKKLAAAGIARIEIERAGQQVNVIISAAKPGVVIGKGGESIKELRGDIERL--V 95 Query: 269 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 448 +V + ++ + A A + ++ A RRA + +MESGARG +V++S Sbjct: 96 SAGTVAVNVAEIPNPNISAPLVALRIAEQIERRFAFRRAMKQAAQRVMESGARGVKVILS 155 Query: 449 GKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 595 G+L G ++A++ K ++G + +H+ DY R G+LGIKV + Sbjct: 156 GRLGGAEQARTEKVLEGRVPLHTLRADIDYGTALAR---TTYGILGIKVLV 203 >UniRef50_Q7MTL9 Cluster: 30S ribosomal protein S3; n=19; Bacteroidetes|Rep: 30S ribosomal protein S3 - Porphyromonas gingivalis (Bacteroides gingivalis) Length = 246 Score = 57.6 bits (133), Expect = 3e-07 Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 2/172 (1%) Frame = +2 Query: 86 AELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFN 265 + + ++L LA+ S + + I I R ++G+ G+ + +L +++ Sbjct: 36 SRIRQYLNARLAKASVSRIVIERALKLVTITICTARPGMIIGKAGQEVDKLKEELKR--- 92 Query: 266 IPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVV 445 I ++ V++ ++ L A AE++ +L G +A RRA + M GA G ++ V Sbjct: 93 ITKKDVQINIYEIRKPELDAAIVAENIARQLEGKIAYRRAVKMAIASAMRMGAEGIKIQV 152 Query: 446 SGKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 595 SG+L G + A+S F +G +H+ DY A L + G+LGIKV I Sbjct: 153 SGRLNGAEMARSEMFKEGRTPLHTLRADIDY---ALAEALTKVGLLGIKVWI 201 >UniRef50_Q12GW5 Cluster: 30S ribosomal protein S3; n=197; Bacteria|Rep: 30S ribosomal protein S3 - Polaromonas sp. (strain JS666 / ATCC BAA-500) Length = 301 Score = 57.2 bits (132), Expect = 4e-07 Identities = 59/233 (25%), Positives = 99/233 (42%), Gaps = 3/233 (1%) Frame = +2 Query: 47 SKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRR 226 + R F G ++ E+L +L S V + + I I + R V+G+KG Sbjct: 24 ASNRDFAGMLAEDIKVREYLKAKLKNAAVSRVLIERPAKNARITIFSARPGVVIGKKGED 83 Query: 227 IRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRF 406 I L + ++ +P V + E+V + A A+S+ +L + RRA ++ Sbjct: 84 IENLKKELSRQLGVP---VAVNIEEVRKPEIDAKLIADSITQQLEKRIMFRRAMKRAMQN 140 Query: 407 IMESGARGCEVVVSGKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLG 580 M GA G +++ SG+L G + A+ + +G + +H+ DY T GV+G Sbjct: 141 AMRLGALGIKIMSSGRLNGIEIARCEWYREGRVPLHTLRADIDY---GTSEAKTTYGVIG 197 Query: 581 IKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEP-VPLEPTXEVRSLAPAPLP 736 +KV W +G + P L P DE P P + R + P P Sbjct: 198 VKV-----WVYKGDTLGRGESPGAKLDAAPSDEERKPRGPRRDARPGSDRPAP 245 >UniRef50_Q6KI49 Cluster: 30S ribosomal protein S3; n=9; Mycoplasma|Rep: 30S ribosomal protein S3 - Mycoplasma mobile Length = 225 Score = 55.6 bits (128), Expect = 1e-06 Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 2/141 (1%) Frame = +2 Query: 173 IIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRY 352 +++ + + ++LG+ G I +LT +QK E + + + L AI AE + Sbjct: 67 VLVHSAKPGAILGQNGENINKLTQDIQKLLRNKELKLNIEVVNIKNPDLNAIILAEQIAI 126 Query: 353 KLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDGLM-IHSGDPCN 526 KL R A +R M+SGA+G + VSG+L G A+S + +G M +H+ Sbjct: 127 KLENRAPFRVAQKFAIRNAMKSGAKGIKTQVSGRLNGVDMARSEGYSEGEMKLHTLRQDV 186 Query: 527 DYVNTATRHVLLRQGVLGIKV 589 D+ R G +G+KV Sbjct: 187 DFAMATAR---TTYGAIGVKV 204 >UniRef50_A6EHQ8 Cluster: 30S ribosomal protein S3; n=1; Pedobacter sp. BAL39|Rep: 30S ribosomal protein S3 - Pedobacter sp. BAL39 Length = 281 Score = 54.4 bits (125), Expect = 3e-06 Identities = 41/171 (23%), Positives = 86/171 (50%), Gaps = 2/171 (1%) Frame = +2 Query: 89 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 268 ++ ++L+ +A+ G + V + T R + I R V+G+ G+ + ++ ++K + Sbjct: 37 KIRKYLSARIAKGGVAKVVIERTLKRITVTIHTARPGIVIGKAGQEVDKIKEELKK---L 93 Query: 269 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 448 ++ +++ ++ L A AE + +L ++ RRA + M GA G +++ S Sbjct: 94 TKKEIQINIFEIKRPELDAQLVAEGVAKQLEARISFRRAMKSTIAATMRMGAEGIKIMTS 153 Query: 449 GKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 595 G+L G + A+S ++ +G + +H+ DY A L G +G+KV I Sbjct: 154 GRLGGAEMARSEQYKEGRIPLHTFRADIDY---ALAEALTTYGKIGVKVWI 201 >UniRef50_A5B260 Cluster: Putative uncharacterized protein; n=1; Vitis vinifera|Rep: Putative uncharacterized protein - Vitis vinifera (Grape) Length = 414 Score = 53.2 bits (122), Expect = 6e-06 Identities = 25/47 (53%), Positives = 36/47 (76%) Frame = +2 Query: 113 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQ 253 ++ EDGYS ++V+VT + EIII AT+TQ+ L E GR++RELT V + Sbjct: 238 DIPEDGYSDIKVKVTGMCMEIIIRATQTQNALIENGRKMRELTLVTR 284 >UniRef50_O83225 Cluster: 30S ribosomal protein S3; n=1; Treponema pallidum|Rep: 30S ribosomal protein S3 - Treponema pallidum Length = 247 Score = 50.8 bits (116), Expect = 3e-05 Identities = 50/203 (24%), Positives = 96/203 (47%), Gaps = 11/203 (5%) Frame = +2 Query: 14 APVAI-MAVNNISKKRKFVGDGVFKAELNEFLT--------RELAEDGYSGVEVRVTPIR 166 +P+ + + +N + R + G + A L+E L E + VE+ P R Sbjct: 6 SPIGLRLGINKVWSSRWYAGPREYAALLHEDLRIRSMIRSFPECKNADIAEVEIVRHPQR 65 Query: 167 SEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESL 346 +++ R V+G KG I ++ + VQKR N + V++ +++ L A A+++ Sbjct: 66 VTVVMHTARPGVVIGAKGVNIEKIGAEVQKRLN---KKVQIKVKEIKRMELNAYLVAQNV 122 Query: 347 RYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG-LMIHSGDP 520 +L ++ R+ M+SGA+G ++ VSG+L G + +++ + +G +H+ Sbjct: 123 ARQLTARVSFRKCLRQACAGTMKSGAQGVKIRVSGRLGGAEMSRTEEIKEGRTPLHTLRA 182 Query: 521 CNDYVNTATRHVLLRQGVLGIKV 589 DY A H G +G+KV Sbjct: 183 DIDY-GFAEAHT--TYGSIGVKV 202 >UniRef50_A1KB21 Cluster: 30S ribosomal protein S3; n=67; cellular organisms|Rep: 30S ribosomal protein S3 - Azoarcus sp. (strain BH72) Length = 260 Score = 50.4 bits (115), Expect = 5e-05 Identities = 50/197 (25%), Positives = 92/197 (46%), Gaps = 2/197 (1%) Frame = +2 Query: 89 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 268 ++ ++L + LA V + + + + + R V+G+KG I L +QK + Sbjct: 38 KVRDYLKKRLAHASVGRVVIERPAKNARVTLFSARPGVVIGKKGEDIEALKRDLQKIVGV 97 Query: 269 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 448 P V + E+V + A A+S+ +L + RRA ++ M GA+G +++ S Sbjct: 98 P---VHVNIEEVRKPEIDAKLIADSIAQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSS 154 Query: 449 GKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGK 622 G+L G + A++ + +G + +H+ DY GV+GIKV W +G+ Sbjct: 155 GRLNGAEIARTEWYREGRVPLHTLRANIDY---GVSEAQTTYGVIGIKV-----WVFKGE 206 Query: 623 NGPKKPQPDHILVTEPK 673 + QP +V EP+ Sbjct: 207 MLGRNEQP---VVAEPE 220 >UniRef50_Q8KAH8 Cluster: 30S ribosomal protein S3; n=10; Chlorobiaceae|Rep: 30S ribosomal protein S3 - Chlorobium tepidum Length = 253 Score = 49.6 bits (113), Expect = 8e-05 Identities = 47/179 (26%), Positives = 88/179 (49%), Gaps = 2/179 (1%) Frame = +2 Query: 59 KFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIREL 238 K D V + ++ L +E A G + + + T +I I A R +++G KG I L Sbjct: 32 KIKQDQVIRNYVHARLKKEKA--GIAKIVIERTTKHIKINIYAARPGAIVGHKGEEINNL 89 Query: 239 TSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMES 418 + Q+ I + V++ +V + A E++ Y+L ++ RRA ++ M + Sbjct: 90 S---QELTRITGKEVKIDVIEVIKPEIEAQLIGENIAYQLENRVSFRRAMKMAIQQAMRA 146 Query: 419 GARGCEVVVSGKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 589 GA G + +G+L G + A++ ++ +G + +H+ DY + T H + G +GIKV Sbjct: 147 GAEGVRIRCAGRLGGAEIARAEQYKEGKIPLHTLRANVDYA-SVTAHTI--AGAIGIKV 202 >UniRef50_Q7UN14 Cluster: 30S ribosomal protein S3; n=3; Planctomycetaceae|Rep: 30S ribosomal protein S3 - Rhodopirellula baltica Length = 236 Score = 49.2 bits (112), Expect = 1e-04 Identities = 50/200 (25%), Positives = 94/200 (47%), Gaps = 6/200 (3%) Frame = +2 Query: 47 SKKRKFVGDGVFKAELNEFLTRELAEDGY--SGVE-VRVTPIRSEIIIM--ATRTQSVLG 211 + K+ F V ++ EF+T+ + Y +G++ + + R E+ +M R ++G Sbjct: 24 ASKQDFADLLVEDRKIREFITKHPKKSQYKSAGIDRIEIERTRDEVRVMLYVARPGLIIG 83 Query: 212 EKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACY 391 +KG+ I L + +Q N+ + + L E+V L A AE + +L + RR Sbjct: 84 KKGQEIEILQAELQ---NLVGRRINLKVEEVGRPELQAQLVAEDISQQLAKRSSFRRTMK 140 Query: 392 GVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQ 568 +L M++GA+G ++ ++G+L G + A+ K G + S ++ + Q Sbjct: 141 RMLEQTMDAGAKGIKIQMAGRLGGAEMARREKQSAGSIPLS--TLQAKIDYGFTEAMTPQ 198 Query: 569 GVLGIKVKIMLPWDQQGKNG 628 G +GI+V W QG G Sbjct: 199 GHIGIQV-----WINQGTYG 213 >UniRef50_P46772 Cluster: 30S ribosomal protein S3; n=5; Thermotogaceae|Rep: 30S ribosomal protein S3 - Thermotoga maritima Length = 209 Score = 48.0 bits (109), Expect = 2e-04 Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 3/172 (1%) Frame = +2 Query: 89 ELNEFLTRELAEDGYSGVEV-RVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFN 265 E+ + + + G S + V R R I + R ++G KG I L ++++FN Sbjct: 37 EIRKIIKNKYYHAGISEIYVERPDAERINITVKTARPGIIIGRKGSEITSLREELERKFN 96 Query: 266 IPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVV 445 + V + E++ T L A AES+ ++ + + A + M GA+G +V+V Sbjct: 97 ---RRVVINIEEIKTPELDAQLVAESIASRIEKRASYKVAMKRAIMNAMRKGAQGIKVMV 153 Query: 446 SGKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 595 +G+L G + A+ ++ G L + DY TAT + G +GIKV I Sbjct: 154 AGRLGGAEIARREWYLRGRLPLQKIKAIIDY-GTAT--AWTKYGTIGIKVWI 202 >UniRef50_UPI00015BD7E8 Cluster: UPI00015BD7E8 related cluster; n=1; unknown|Rep: UPI00015BD7E8 UniRef100 entry - unknown Length = 231 Score = 45.2 bits (102), Expect = 0.002 Identities = 40/170 (23%), Positives = 85/170 (50%), Gaps = 2/170 (1%) Frame = +2 Query: 92 LNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 271 + +++ G S V + + + + I++++ ++G KG + +L + +++ + Sbjct: 39 IRKYIKERYKSAGISKVTIERSGEKIRVRILSSKPGIIIGRKGAEVDQLKNDLERI--VK 96 Query: 272 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 451 + + L ++V L A AE + ++ ++ RRA + ++SGA+G +V V G Sbjct: 97 NKDISLSVDEVRVPQLDAQLVAEDIALQIERRVSHRRAMKRAIDNAIKSGAKGIKVQVKG 156 Query: 452 KLRG-QRAKSMKFVDGLM-IHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 595 ++ G A++ F+ G M + + DY AT + + G+LGIKV I Sbjct: 157 RIGGADLARAEWFLVGRMPLQTLRADIDY-GYATAYT--KYGILGIKVWI 203 >UniRef50_Q6A6N2 Cluster: 30S ribosomal protein S3; n=27; Bacteria|Rep: 30S ribosomal protein S3 - Propionibacterium acnes Length = 269 Score = 44.8 bits (101), Expect = 0.002 Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 2/181 (1%) Frame = +2 Query: 59 KFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIREL 238 + VG+ V ++ E+L + L G S +E+ R I + A R V+G G + Sbjct: 30 ELVGEDV---KIREWLHKNLERAGLSSIEIERRSERVTIFLYAARPGIVIGRNGAEAERV 86 Query: 239 TSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMES 418 ++K + + ++L +V + A A+ + +L +A RRA + M + Sbjct: 87 RGELEK---LTGKQIQLNILEVKSPETDAQLVAQGIAEQLAARVAFRRAMRKAQQSAMNA 143 Query: 419 GARGCEVVVSGKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVK 592 GA G + SG+L G + ++S + +G + +H+ DY R G +G+KV Sbjct: 144 GALGIRIKCSGRLGGAEMSRSEGYREGRVPLHTLRADIDYGFFEARTTF---GRIGVKVW 200 Query: 593 I 595 I Sbjct: 201 I 201 >UniRef50_Q2JFH0 Cluster: 30S ribosomal protein S3; n=94; Bacteria|Rep: 30S ribosomal protein S3 - Frankia sp. (strain CcI3) Length = 315 Score = 44.4 bits (100), Expect = 0.003 Identities = 34/144 (23%), Positives = 67/144 (46%) Frame = +2 Query: 56 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 235 + +VG+ V ++ + ++R + G S V++ T R + I R V+G +G Sbjct: 29 KAYVGEDV---KIRKMMSRGMERAGISRVDIERTQGRLRVDIHTARPGIVIGRRGAEADR 85 Query: 236 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 415 + ++K + + V+L +V + A A+ + +L ++ RRA ++ M+ Sbjct: 86 IRGDLEK---LTGKQVQLNILEVKNPEVDAQLVAQGVAEQLSSRVSFRRAMRKAMQTAMK 142 Query: 416 SGARGCEVVVSGKLRGQRAKSMKF 487 GA+G V SG+L G +F Sbjct: 143 GGAKGIRVQCSGRLGGAEMSRSEF 166 >UniRef50_P0A4C3 Cluster: 30S ribosomal protein S3; n=39; Bacteria|Rep: 30S ribosomal protein S3 - Streptococcus pneumoniae Length = 217 Score = 44.0 bits (99), Expect = 0.004 Identities = 41/170 (24%), Positives = 79/170 (46%), Gaps = 2/170 (1%) Frame = +2 Query: 92 LNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 271 + +F+ +ELA+ S +E+ + + + + V+G+ G + L + + K + Sbjct: 38 IRKFVQKELADAAVSTIEIERAVNKVNVSLHTAKPGMVIGKGGANVDALRAKLNK---LT 94 Query: 272 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 451 + V + ++ L A E + +L +A RRA ++ M +GA+G + VSG Sbjct: 95 GKQVHINIIEIKQPDLDAHLVGEGIARQLEQRVAFRRAQKQAIQRAMRAGAKGIKTQVSG 154 Query: 452 KLRG-QRAKSMKFVDGLM-IHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 595 +L G A++ + +G + +H+ DY A G LG+KV I Sbjct: 155 RLNGADIARAEGYSEGTVPLHTLRADIDY---AWEEADTTYGKLGVKVWI 201 >UniRef50_Q3ZZL8 Cluster: 30S ribosomal protein S3; n=18; Bacteria|Rep: 30S ribosomal protein S3 - Dehalococcoides sp. (strain CBDB1) Length = 278 Score = 44.0 bits (99), Expect = 0.004 Identities = 50/220 (22%), Positives = 99/220 (45%), Gaps = 6/220 (2%) Frame = +2 Query: 89 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 268 +L + ++++ + S V++ + + + R V+G G+R+ E+ ++ ++ Sbjct: 38 KLRKAISKKYVDAAISQVDIERQSNKVTVSVRTARPGIVIGRGGQRVDEMRHFLE---DL 94 Query: 269 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 448 + V+L +++ L A A S+ ++ +A RRA + M++GA+G ++ S Sbjct: 95 IGKKVQLNIVEISQAELDAFLVARSVAEQIERRVAYRRAMKQAIFRSMQAGAKGIKICAS 154 Query: 449 GKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGK 622 G+L G + A+ +G + +H+ DY T L G +GIKV W +G Sbjct: 155 GRLGGVEIARREVMHEGRVPLHTLRADIDYGCTRAHTAL---GDVGIKV-----WVYRGD 206 Query: 623 NGPKKPQPDHILVTE----PKDEPVPLEPTXEVRSLAPAP 730 P+ + VTE D P + +V +A P Sbjct: 207 ILPEAKEKSESEVTEMAAVMADAPAAVVTETKVADIAAKP 246 >UniRef50_A6NXD5 Cluster: Putative uncharacterized protein; n=1; Bacteroides capillosus ATCC 29799|Rep: Putative uncharacterized protein - Bacteroides capillosus ATCC 29799 Length = 283 Score = 43.6 bits (98), Expect = 0.005 Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 2/146 (1%) Frame = +2 Query: 65 VGDGVFK-AELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELT 241 VGD + + ++ +FL + G +E+ + I + R V+G+ G I L Sbjct: 29 VGDLLVEDKKIRDFLKKTQYGAGIPKIEIERDNAKVRIYLHCARPGVVIGKGGEAIEALR 88 Query: 242 SVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESG 421 ++K +SV L +V + A AE++ +L + RRA + M G Sbjct: 89 LQLEKMLG---KSVALNIVEVKNPDMDAQLIAENIAQQLEKRIGFRRAMKNAMGRAMRMG 145 Query: 422 ARGCEVVVSGKLRG-QRAKSMKFVDG 496 ARG + VSG+L G + A++ + DG Sbjct: 146 ARGIKTQVSGRLGGAEIARTEHYHDG 171 >UniRef50_P56798 Cluster: Chloroplast 30S ribosomal protein S3; n=78; Streptophyta|Rep: Chloroplast 30S ribosomal protein S3 - Arabidopsis thaliana (Mouse-ear cress) Length = 218 Score = 43.6 bits (98), Expect = 0.005 Identities = 34/161 (21%), Positives = 79/161 (49%), Gaps = 2/161 (1%) Frame = +2 Query: 125 DGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKV 304 +G + +E++ +III + ++ +K RR+ EL VQK N + + + ++ Sbjct: 58 EGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELQMNVQKELNCVNRKLNIAITRI 117 Query: 305 ATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMK 484 + AE + +L ++ R+A + ++ +G +V ++G++ G+ ++ Sbjct: 118 SNPYGDPNILAEFIAGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVE 177 Query: 485 FV-DG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIML 601 ++ +G + + + + DY + R + GVLGIK+ I + Sbjct: 178 WIREGRVPLQTIEAKIDYCSYTVRTI---YGVLGIKIWIFV 215 >UniRef50_P46247 Cluster: 30S ribosomal protein S3; n=3; Entomoplasmatales|Rep: 30S ribosomal protein S3 - Mesoplasma florum (Acholeplasma florum) Length = 241 Score = 43.2 bits (97), Expect = 0.007 Identities = 30/137 (21%), Positives = 64/137 (46%), Gaps = 1/137 (0%) Frame = +2 Query: 89 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 268 ++ E + + L + S +++ T +II R VLG++G+ + + + VQK Sbjct: 38 KIREGVLKLLKDAAVSKIKIERTNSNITLIIRTARPAIVLGQEGKNVSNIATAVQKIAKD 97 Query: 269 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 448 VE+ +V A A + ++ + R +R +++G +G + VS Sbjct: 98 RNLKVEVKVIEVKNPDADATLVARWIGEQITNRASFRTVQKLAIRKALKAGVKGIKTSVS 157 Query: 449 GKLRG-QRAKSMKFVDG 496 G+L G + A++ +++G Sbjct: 158 GRLGGVEMARTEGYIEG 174 >UniRef50_Q9PQQ4 Cluster: 30S ribosomal protein S3; n=1; Ureaplasma parvum|Rep: 30S ribosomal protein S3 - Ureaplasma parvum (Ureaplasma urealyticum biotype 1) Length = 257 Score = 42.3 bits (95), Expect = 0.012 Identities = 38/171 (22%), Positives = 80/171 (46%), Gaps = 2/171 (1%) Frame = +2 Query: 89 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 268 ++ ++L+ + G VE+ R + + A ++ ++G + + + + K Sbjct: 39 KIRKYLSTKYKNAGIDHVEIERDQQRVNVYVYAVQSGLLIGTEASEKKLIELAINKIVG- 97 Query: 269 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 448 +Q V L +V L A A + + ++ R A V++ ++++GARG + VS Sbjct: 98 RKQLVSLKVVEVQIPELQASLMAREIADAIENRVSFRIAQKMVIKKVLKAGARGIKTHVS 157 Query: 449 GKLRG-QRAKSMKFVDGLM-IHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 595 G+L G + A+ + G+M +H+ DY + + G++G+KV I Sbjct: 158 GRLGGVEMAREEGYTQGVMTLHTLRADIDY---SMQEAHTTYGIIGVKVWI 205 >UniRef50_Q04G79 Cluster: 30S ribosomal protein S3; n=1; Oenococcus oeni PSU-1|Rep: 30S ribosomal protein S3 - Oenococcus oeni (strain BAA-331 / PSU-1) Length = 267 Score = 42.3 bits (95), Expect = 0.012 Identities = 40/174 (22%), Positives = 75/174 (43%), Gaps = 6/174 (3%) Frame = +2 Query: 92 LNEFLTRELAEDGYSGVEV-RVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQK---R 259 + ++L L + + + R P R + I + V+G G + L S + K Sbjct: 39 IRKYLETNLKDAAVDRITIERTEPTRINLTIHTAKPGIVIGRGGADVERLRSELSKIVDT 98 Query: 260 FNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEV 439 + + V + ++ L A + + L +A RRA G ++ + +GA+G Sbjct: 99 YKGQHKRVNINIVEIRKPDLNAHLVGQQIAADLERRVAFRRAMRGAIQRVQRAGAKGVRT 158 Query: 440 VVSGKLRG-QRAKSMKFVDGLM-IHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 595 +VSG+L G A+ ++ +G + +H+ DY + + G LGIK I Sbjct: 159 MVSGRLNGADIARKEQYTEGTVPLHTLRADIDY---SWDEAMTSYGNLGIKTWI 209 >UniRef50_Q2GED3 Cluster: 30S ribosomal protein S3; n=1; Neorickettsia sennetsu str. Miyayama|Rep: 30S ribosomal protein S3 - Neorickettsia sennetsu (strain Miyayama) Length = 211 Score = 41.1 bits (92), Expect = 0.028 Identities = 42/172 (24%), Positives = 80/172 (46%), Gaps = 4/172 (2%) Frame = +2 Query: 92 LNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFN-I 268 + +++ A G S V ++ +I + + ++G+KG + + K+F + Sbjct: 39 VTKYVESSFAHIGISKVIIKRKGASCDITLHCMKPGLIIGKKGADLESFRLKLNKKFGFV 98 Query: 269 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM-ESGARGCEVVV 445 P +V +V A+ A+S+ ++L + RR + +M ES +G +V Sbjct: 99 PSLNV----VEVKKPNSSAVLVAKSIAFQLEKRSSFRRVIKKAIATVMRESDVKGVKVAC 154 Query: 446 SGKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 595 SG+L G + A++ F +G + +H+ DY A H GV+G+KV I Sbjct: 155 SGRLSGAEIARTEVFKEGSIPLHTMRADIDYW-VAEAHT--TYGVIGVKVWI 203 >UniRef50_Q9XD30 Cluster: 30S ribosomal protein S3; n=4; Leptospira|Rep: 30S ribosomal protein S3 - Leptospira interrogans Length = 225 Score = 38.7 bits (86), Expect = 0.15 Identities = 27/125 (21%), Positives = 53/125 (42%) Frame = +2 Query: 89 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 268 ++ +F+ G V + P + + + + V+G+KG I + +++ + Sbjct: 37 KIRKFVQNRFNNAGVVKVVIERFPEKINVNLHTAKPGIVIGQKGANIEAVKKILKTMTDK 96 Query: 269 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 448 P + +K T C AES+ ++ RR LR M G G ++++S Sbjct: 97 PVNLNIIEVKKPETVAQCI---AESIALQIEQRQPFRRVMKQELRRAMRGGVEGIKILIS 153 Query: 449 GKLRG 463 G+L G Sbjct: 154 GRLNG 158 >UniRef50_Q11HQ8 Cluster: 30S ribosomal protein S3; n=167; cellular organisms|Rep: 30S ribosomal protein S3 - Mesorhizobium sp. (strain BNC1) Length = 235 Score = 38.3 bits (85), Expect = 0.19 Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 2/169 (1%) Frame = +2 Query: 89 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 268 ++ ++ EL + S V + + + I + R ++G+KG I +L + + N Sbjct: 38 KIRTYIENELKQAAISKVVIERPHKKCRVTIHSARPGLIIGKKGADIEKLRRKITQMTNA 97 Query: 269 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 448 L +V + A A+S+ +L +A RRA ++ M GA G + + Sbjct: 98 ---ETHLNIVEVRKPEIDARLIAQSIAQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCT 154 Query: 449 GKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 589 G+L G + A+ + +G + +H+ DY T GV G+KV Sbjct: 155 GRLGGAEIARIEWYREGRVPLHTLRADIDY---GTAEAKTAYGVCGVKV 200 >UniRef50_Q20F10 Cluster: Chloroplast 30S ribosomal protein S3; n=2; Chlorophyta|Rep: Chloroplast 30S ribosomal protein S3 - Oltmannsiellopsis viridis (Marine flagellate) Length = 235 Score = 38.3 bits (85), Expect = 0.19 Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 11/161 (6%) Frame = +2 Query: 140 VEVRVTPIRSEIIIMATRTQSVLGEKGR---RIRELTSVVQKRFN--------IPEQSVE 286 ++ +V + E+ I TR ++G K + ++++L +Q N P V Sbjct: 57 IQRKVDRTQVEVEIRTTRPGLLVGRKRQNCDKLKQLRDELQVELNKFRAKNGVSPTAKVA 116 Query: 287 LYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQ 466 L V + AI AE L +L +A RRA VL I +G ++ VSG+L G Sbjct: 117 LQVTTVQNKSSEAIVIAEFLVNQLERRIAFRRALRRVLSIIQRDRVQGAKIQVSGRLNGA 176 Query: 467 RAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 589 +++ + D V+ R G+LGIKV Sbjct: 177 EIARSEWIRTGRVPLQTLRAD-VDYCHREAKTIYGILGIKV 216 >UniRef50_A0MNG0 Cluster: Putative uncharacterized protein; n=1; Thermus phage phiYS40|Rep: Putative uncharacterized protein - Thermus phage phiYS40 Length = 1014 Score = 37.9 bits (84), Expect = 0.26 Identities = 26/102 (25%), Positives = 51/102 (50%) Frame = +2 Query: 8 FSAPVAIMAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMA 187 FS ++ + ++ + + + +FK+E FL+R L+E Y+ ++ RS I Sbjct: 205 FSEFRSLFELAKSTRNQLSISERIFKSEREIFLSRTLSEF-YNESLNAISIARSNFIAQL 263 Query: 188 TRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATR 313 R L +K + E+ + ++RFN + +LYAE++ R Sbjct: 264 NRVNESL-QKAQSPEEVARLQEERFNYLKSLTQLYAEELKIR 304 >UniRef50_A7R9B1 Cluster: Chromosome undetermined scaffold_3592, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_3592, whole genome shotgun sequence - Vitis vinifera (Grape) Length = 207 Score = 36.3 bits (80), Expect = 0.78 Identities = 32/146 (21%), Positives = 69/146 (47%), Gaps = 2/146 (1%) Frame = +2 Query: 170 EIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLR 349 ++II + ++ K RRI EL VQK N + + + ++ AE + Sbjct: 62 QVIIYMGFPKLLVEGKPRRIEELQMNVQKELNYVNRKLNIAITRITKPYGHPNILAEFIA 121 Query: 350 YKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFV-DG-LMIHSGDPC 523 +L ++ R+A + ++ +G +V ++G++ G+ ++++ +G + + + Sbjct: 122 GQLRNRVSFRKAIKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAK 181 Query: 524 NDYVNTATRHVLLRQGVLGIKVKIML 601 DY + R + GVLGIK+ I + Sbjct: 182 IDYCSYRVRTI---YGVLGIKIWIFV 204 >UniRef50_A5AUQ8 Cluster: Putative uncharacterized protein; n=1; Vitis vinifera|Rep: Putative uncharacterized protein - Vitis vinifera (Grape) Length = 617 Score = 36.3 bits (80), Expect = 0.78 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Frame = +2 Query: 176 IIMATRTQSVLGEK-GRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRY 352 +I TRT S+ + ++IREL SV Q +I + + A A RGL A+ ES+R Sbjct: 101 VIRQTRTLSMTSAQFPKKIRELQSVTQSYVSIDATTKDKAAALAAARGLGRNAKIESVRL 160 Query: 353 KLIGGLAVRRACYGVLRFIMESGARG 430 ++ L + +C G+ M + + G Sbjct: 161 PMLTVLKL-HSCEGITSASMAAISHG 185 >UniRef50_Q6YR15 Cluster: 30S ribosomal protein S3; n=163; Firmicutes|Rep: 30S ribosomal protein S3 - Onion yellows phytoplasma Length = 252 Score = 36.3 bits (80), Expect = 0.78 Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 2/146 (1%) Frame = +2 Query: 164 RSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAES 343 R I + + ++G+ G +L V K + ++ V L +V A+ A++ Sbjct: 67 RITISVHTAKPGVIIGKDGDTRNKL---VAKLKELTQKDVNLNVLEVKNSDKIALLIAQN 123 Query: 344 LRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG-LMIHSGD 517 + +L + RR ++ +++GA+G + ++SG+L G + A+S +G + +H+ Sbjct: 124 MAEQLENRMFFRRVQKMAIQKALKAGAKGVKTLISGRLGGAEIARSEGHAEGRVPLHTLR 183 Query: 518 PCNDYVNTATRHVLLRQGVLGIKVKI 595 DY A GVLGIKV I Sbjct: 184 ADIDY---AAVEAHTTYGVLGIKVWI 206 >UniRef50_A6GSD9 Cluster: TonB, C-terminal; n=1; Limnobacter sp. MED105|Rep: TonB, C-terminal - Limnobacter sp. MED105 Length = 236 Score = 35.9 bits (79), Expect = 1.0 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = +2 Query: 629 PKKPQPDHILVTEPKDEPVPLEPTXEVRSLAPAPLP 736 P KP+P + EPK P P+ VR +AP P+P Sbjct: 81 PPKPEPKPVPKPEPKPTPKPVAKPEPVREVAPEPVP 116 >UniRef50_Q52188 Cluster: TraC precursor; n=9; root|Rep: TraC precursor - Enterococcus faecalis (Streptococcus faecalis) Length = 545 Score = 35.5 bits (78), Expect = 1.4 Identities = 15/40 (37%), Positives = 26/40 (65%) Frame = +2 Query: 62 FVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIII 181 FVGDG F+ + EFL +L E+ G++V +TP+ + + + Sbjct: 397 FVGDGEFEKKAGEFLQGQL-EENLEGLKVNITPVPANVFM 435 >UniRef50_Q9U982 Cluster: Drosophila dodeca-satellite protein 1; n=9; Endopterygota|Rep: Drosophila dodeca-satellite protein 1 - Drosophila melanogaster (Fruit fly) Length = 1301 Score = 34.7 bits (76), Expect = 2.4 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Frame = +2 Query: 155 TPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLC-AIA 331 T ++ + + +LG+ G+R+RE+ V R NIP QS E +E + G IA Sbjct: 167 TQASRQVTVPREHFRVILGKGGQRLREIERVTATRINIPSQSDE--SEFITIAGTKEGIA 224 Query: 332 QAE 340 QAE Sbjct: 225 QAE 227 >UniRef50_Q9XDW7 Cluster: PsbAa; n=1; Rhodopseudomonas palustris|Rep: PsbAa - Rhodopseudomonas palustris Length = 403 Score = 29.1 bits (62), Expect(2) = 2.8 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 2/61 (3%) Frame = +2 Query: 269 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGA--RGCEVV 442 P + L KVA L I A +LR +LI G V GV+ + + A RGCEV Sbjct: 114 PRRLAALEGTKVAVHYLRGIDDALTLRPQLIEGHRVALVGGGVIGLEVAAAALSRGCEVT 173 Query: 443 V 445 + Sbjct: 174 I 174 Score = 24.2 bits (50), Expect(2) = 2.8 Identities = 12/55 (21%), Positives = 26/55 (47%) Frame = +2 Query: 425 RGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 589 RG ++ +L GQ+ S+ DG ++ + + + L+ G+ G++V Sbjct: 201 RGAAILCKAELSGQQTHSLTLADGRVVDADVIVVGIGSEPAGELALQIGLAGVQV 255 >UniRef50_UPI0000DA2268 Cluster: PREDICTED: hypothetical protein; n=2; Rattus norvegicus|Rep: PREDICTED: hypothetical protein - Rattus norvegicus Length = 328 Score = 34.3 bits (75), Expect = 3.2 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 331 PGRISKIQAYRRSRCTSCLLWCSPFHH 411 PGR +A RRSRC+ C W HH Sbjct: 240 PGRDWSAEASRRSRCSRCCTWSGDIHH 266 >UniRef50_Q5U794 Cluster: Signal recognition particle GTPase; n=1; Azospirillum lipoferum|Rep: Signal recognition particle GTPase - Azospirillum lipoferum Length = 276 Score = 33.9 bits (74), Expect = 4.2 Identities = 15/45 (33%), Positives = 23/45 (51%) Frame = +2 Query: 602 PWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTXEVRSLAPAPLP 736 P Q+ P +P+P+ V EP P +EP ++PAP+P Sbjct: 25 PVSQESAPPPPEPEPEVEPVPEPAPAPPSVEPPLSPAQVSPAPVP 69 >UniRef50_Q8EUC1 Cluster: 30S ribosomal protein S3; n=7; Mycoplasma|Rep: 30S ribosomal protein S3 - Mycoplasma penetrans Length = 417 Score = 33.9 bits (74), Expect = 4.2 Identities = 44/207 (21%), Positives = 91/207 (43%), Gaps = 6/207 (2%) Frame = +2 Query: 134 SGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR----ELTSVVQKRFNIPEQSVELYAEK 301 S VE+ T + +I I ++ VLG++ ++ +L+ +V ++ + + L Sbjct: 54 SHVEIERTQNKVDIFIHCSQPGIVLGKEMSNLKVLKQQLSYIVGRKTKVNVNVLPLDKPT 113 Query: 302 VATRGLCA-IAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAK 475 + R + IA A R+ R A ++ ++ SGA+G + VSG+L G + A+ Sbjct: 114 FSARIIAREIADAIENRFSF------RNAQKIAIKKVLASGAKGIKTNVSGRLGGVEMAR 167 Query: 476 SMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHI 655 + +G++ + N ++ A G++G+KV W +G+ K + Sbjct: 168 EEGYSEGIVPLTTLRAN--IDYALEEAWTTYGLIGVKV-----WINRGELFKKNFSQNTK 220 Query: 656 LVTEPKDEPVPLEPTXEVRSLAPAPLP 736 +P ++ +P + + P P P Sbjct: 221 FEKKPIEKKREQQPVQQQKPQQPKPQP 247 >UniRef50_Q39682 Cluster: Glycine-rich protein; n=1; Daucus carota|Rep: Glycine-rich protein - Daucus carota (Carrot) Length = 111 Score = 33.1 bits (72), Expect = 7.3 Identities = 13/35 (37%), Positives = 14/35 (40%) Frame = +1 Query: 391 WCSPFHHGIWCPWL*SCCIWQAAWSTCQINEVCRW 495 W P G WC W C IW S C+ RW Sbjct: 32 WWIPPRRGRWCWWRCRCWIWSRLRSWCRSRRRIRW 66 >UniRef50_A0DWV1 Cluster: Chromosome undetermined scaffold_67, whole genome shotgun sequence; n=2; Paramecium tetraurelia|Rep: Chromosome undetermined scaffold_67, whole genome shotgun sequence - Paramecium tetraurelia Length = 331 Score = 33.1 bits (72), Expect = 7.3 Identities = 16/54 (29%), Positives = 26/54 (48%) Frame = +2 Query: 575 LGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTXEVRSLAPAPLP 736 LG++ K L K GP + QP V +P +P P++P +++ P P Sbjct: 59 LGLQEKDFLVVMVNVKKGPPQQQPVQQQVQQPPQQPQPVQPQQPIQAFKPVVAP 112 >UniRef50_O84054 Cluster: Putative uncharacterized protein; n=3; Chlamydia|Rep: Putative uncharacterized protein - Chlamydia trachomatis Length = 520 Score = 32.7 bits (71), Expect = 9.7 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 5/76 (6%) Frame = +2 Query: 470 AKSMKFVDGLM--IHSGDPCNDYVNTAT---RHVLLRQGVLGIKVKIMLPWDQQGKNGPK 634 A ++K+V G++ I + D + +N+AT + + L Q LGI++ I D + Sbjct: 167 AATVKYVKGIVDKILNNDKLSTALNSATEVEKKIALAQKALGIEITINPDADTNPDTDQE 226 Query: 635 KPQPDHILVTEPKDEP 682 P P + TE K+ P Sbjct: 227 TPDPAPVADTEEKESP 242 >UniRef50_Q5SCB4 Cluster: Cyclin H; n=2; Ostreococcus|Rep: Cyclin H - Ostreococcus tauri Length = 322 Score = 32.7 bits (71), Expect = 9.7 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%) Frame = +2 Query: 359 IGGLAVRRACYGVLR----FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMI 505 + GL R CYG R F+M+ GC+ S +L R K++ VD LM+ Sbjct: 146 LSGLKFRLVCYGATRPLDGFLMDVEDGGCKGATSKQLIECRKKALDIVDRLML 198 >UniRef50_Q5XIY2 Cluster: Transmembrane protein 56; n=8; Euteleostomi|Rep: Transmembrane protein 56 - Danio rerio (Zebrafish) (Brachydanio rerio) Length = 264 Score = 32.7 bits (71), Expect = 9.7 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = +2 Query: 386 CYGVLRFI-MESGARGCEVVVSGKLRGQRAKSMK 484 C +L I M ARGC V++GKL+G++A S K Sbjct: 222 CLDILNIIWMYKIARGCYKVITGKLKGRKADSKK 255 >UniRef50_P36021 Cluster: Monocarboxylate transporter 8; n=24; Euteleostomi|Rep: Monocarboxylate transporter 8 - Homo sapiens (Human) Length = 539 Score = 32.7 bits (71), Expect = 9.7 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 7/52 (13%) Frame = +2 Query: 602 PW---DQQGKNGPKKPQPDHILVTEPKDEPVPL---EPTXEVRSLA-PAPLP 736 PW DQ+ + P+P+ EP+ EPVP+ EP E + L PAPLP Sbjct: 14 PWQEADQEQQEPVGSPEPESEPEPEPEPEPVPVPPPEPQPEPQPLPDPAPLP 65 Database: uniref50 Posted date: Oct 5, 2007 11:19 AM Number of letters in database: 575,637,011 Number of sequences in database: 1,657,284 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 755,583,722 Number of Sequences: 1657284 Number of extensions: 15859799 Number of successful extensions: 53364 Number of sequences better than 10.0: 79 Number of HSP's better than 10.0 without gapping: 49375 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 53050 length of database: 575,637,011 effective HSP length: 99 effective length of database: 411,565,895 effective search space used: 60088620670 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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