Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_H15
(738 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28) 395 e-110
SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9) 31 0.97
SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_57373| Best HMM Match : DUF292 (HMM E-Value=4.7) 29 3.9
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68) 29 3.9
SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31) 29 3.9
SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42) 29 3.9
SB_2854| Best HMM Match : TUDOR (HMM E-Value=0.00033) 28 6.9
SB_56721| Best HMM Match : DUF755 (HMM E-Value=0.52) 28 9.1
SB_41411| Best HMM Match : RVT_1 (HMM E-Value=0.00044) 28 9.1
SB_29024| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_22738| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)
Length = 240
Score = 395 bits (972), Expect = e-110
Identities = 189/221 (85%), Positives = 201/221 (90%)
Frame = +2
Query: 44 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 223
ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTPIR+EIII+ATRTQ+VLGEKGR
Sbjct: 5 ISKKRKFVADGLFKAELNEFLTRELAEDGYSGVEVRVTPIRTEIIILATRTQNVLGEKGR 64
Query: 224 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 403
RIRELTSVVQKRF PE SVELYAEKVATRGLCAIAQ ESLRYKLIGGLAVRRACYGVLR
Sbjct: 65 RIRELTSVVQKRFGFPEGSVELYAEKVATRGLCAIAQCESLRYKLIGGLAVRRACYGVLR 124
Query: 404 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 583
FIMESGA+GCEVVVSGKLRGQRAKSMKFVDGLM+H+G+P YV+TA RHV LRQGVLGI
Sbjct: 125 FIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMVHAGEPTTHYVDTAVRHVYLRQGVLGI 184
Query: 584 KVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTXE 706
KVKIMLPWD GK GPKKP PD + + EPKDE VP +PT E
Sbjct: 185 KVKIMLPWDPTGKTGPKKPLPDQVSIVEPKDEVVPAQPTSE 225
>SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)
Length = 482
Score = 31.1 bits (67), Expect = 0.97
Identities = 13/20 (65%), Positives = 13/20 (65%)
Frame = +1
Query: 598 VAVGPARQERPEEATTRPHP 657
VA GPAR PE TRPHP
Sbjct: 107 VAAGPARITSPEPPATRPHP 126
>SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +1
Query: 307 YSWSLRYRPGRISKIQAYRRSRCTSCLLWCSPFHHGIWCPW 429
Y+W L + P + ++ Y R + L C+P + W W
Sbjct: 4 YNWWLAWNPALLCLMRQYNRWLAWNPALLCNPRQYNRWLAW 44
>SB_57373| Best HMM Match : DUF292 (HMM E-Value=4.7)
Length = 383
Score = 29.1 bits (62), Expect = 3.9
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Frame = +2
Query: 98 EFLTRELAEDGYSGVEVR--VTPIR----SEIIIMATRTQSVLGEKGRRIRELTSVVQKR 259
E+L R++ D YS E +TP +IMA R QSVL ++GR +LT Q+R
Sbjct: 175 EYLQRKI-NDAYSPEEAEKNITPYSLCSYENPMIMAFRLQSVLRKRGR--DDLT-WAQQR 230
Query: 260 FNIPEQSVELYA 295
F+ SVE +A
Sbjct: 231 FDDLADSVEQFA 242
>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3172
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/70 (22%), Positives = 34/70 (48%)
Frame = +2
Query: 128 GYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 307
GY+ + + S +++ A +++ ++ + +RE +QKRF E+ +Y
Sbjct: 1941 GYTARKEYSRCVTSIVLMQALVRRNLAVKRYQALREAAIGIQKRFRAKEEGKLVYLMFHI 2000
Query: 308 TRGLCAIAQA 337
RG C + Q+
Sbjct: 2001 QRGACIVIQS 2010
>SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68)
Length = 401
Score = 29.1 bits (62), Expect = 3.9
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +1
Query: 448 WQAAWSTCQINEVCRWTHDPLW 513
W+ AW+ C + E +T++P W
Sbjct: 76 WKQAWTPCSLQETTIYTNNPPW 97
>SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)
Length = 976
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +1
Query: 442 CIWQAAWSTCQINEVCRWTHDPLWRP 519
C W + W + E WTH P RP
Sbjct: 185 CRWLSQWKQSEEEESVLWTHSPARRP 210
>SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42)
Length = 426
Score = 29.1 bits (62), Expect = 3.9
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1
Query: 571 STRNQGQNHVAVGPARQERPEEATTRP 651
+++N + H + PA+QE+PE + +P
Sbjct: 162 TSKNTSRTHKIIAPAKQEKPERYSRKP 188
>SB_2854| Best HMM Match : TUDOR (HMM E-Value=0.00033)
Length = 359
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -2
Query: 719 RGSALRWSARGARARPWALSPGCGLVVASSGRSCLAGP 606
R A R RGA AR W +SPG L + GR+ + P
Sbjct: 164 RAMAGRGRGRGALAR-WTISPGQPLAASFDGRAVASVP 200
>SB_56721| Best HMM Match : DUF755 (HMM E-Value=0.52)
Length = 516
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 662 TEPKDEPVPLEPTXEVRSLAPAPLP 736
+EP D P P+ P E+ + P P P
Sbjct: 55 SEPSDSPGPMSPEPEIMTPTPEPSP 79
>SB_41411| Best HMM Match : RVT_1 (HMM E-Value=0.00044)
Length = 647
Score = 27.9 bits (59), Expect = 9.1
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +2
Query: 434 EVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQG-VLGIKVKIMLPWD 610
E + S + R++ MK + GL + CN+ +T VL + G +L K +I W
Sbjct: 236 EEIASEAEKAARSQHMKTLYGL---TKKLCNERPRHSTA-VLDKDGNLLSKKEEIQRRWT 291
Query: 611 QQGKNGPKKPQPDHILVTEPKDE 679
+ + K+ QPD+ + EP+DE
Sbjct: 292 EHFREVLKREQPDNPI--EPEDE 312
>SB_29024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 998
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 274 LWNVESLLYYGSQLTDSASFLSEHTLCPGGHNNDLRADGSDPH 146
LWN++ + + F + H+ C GG N D A GS+ H
Sbjct: 186 LWNIKDRVLERKYQGVTQGFYTIHS-CFGGVNQDFLASGSEDH 227
>SB_22738| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = +2
Query: 431 CEVVVSGKLRGQRAKSMKFVDGLMIHSG--DPCNDYVNTATRHVLLRQGVLGIKVKIMLP 604
CE + + KL+ +K+ + G + D C+ ++N + Q LGIK+ L
Sbjct: 136 CEWLTANKLQFHPSKTKSMIIGSSYNLAKIDQCSVFINNTEVTRVKSQKCLGIKIDDKLN 195
Query: 605 WDQQGKNGPKKPQP 646
W KK P
Sbjct: 196 WGNHIDKFCKKAGP 209
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,697,745
Number of Sequences: 59808
Number of extensions: 513852
Number of successful extensions: 1652
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1645
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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