Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_H14
         (760 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    26   0.28 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   6.1  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    21   8.1  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 360 RMDLALTNPRGAAPPSCPSDTRPVPPSIPLRIL 262
           R D  L++P G  PP  PS   P PPS P  ++
Sbjct: 102 RTDDWLSSPSGNVPPLTPS---PGPPSHPYTVI 131


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 557  RDPSQSAGPE*ELSEEHLRSTDIALLQRAEDALVEGQREG 676
            RDP    GP   LS + +   DIA ++R +  LV+  + G
Sbjct: 2618 RDPQGRIGPYAYLSNQWVSYDDIAEIRR-KSRLVKALKLG 2656


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 680 DCLHVVLQPAHLQRAEVRR 624
           + LHVV Q  HLQ+  V++
Sbjct: 109 EVLHVVKQCYHLQKINVQQ 127


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,078
Number of Sequences: 336
Number of extensions: 3927
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20338724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)