Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_H14
(760 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 2.2
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 27 2.9
SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces po... 27 3.8
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 26 5.1
SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr 2|||M... 26 6.7
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 6.7
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 26 6.7
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 8.9
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 8.9
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 25 8.9
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac... 25 8.9
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 25 8.9
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 25 8.9
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ... 25 8.9
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Frame = +3
Query: 507 LHPAIAWNDIRTDSTVDAILAKVPDR-NKNYLKNICGLPISP---YFSALKMRWLKDN 668
LHP ++ +R + +L + + K + + G+ + YFS KM WLK N
Sbjct: 420 LHPRLSTGSMREEDNFGVLLLEFLELYGKQFYYDAVGIAVHNGGFYFSKKKMGWLKPN 477
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -2
Query: 333 RGAAPPSCPSDTRPVPP-SIPLRILQI*RSW 244
+ A PP+ P+ + P+PP SI + I + RSW
Sbjct: 136 KSALPPNVPASSSPLPPMSIAMNIARK-RSW 165
>SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -3
Query: 536 YVVPGYGGVQWLPGVFVPSYSCLPLIRYA*SNDVIF 429
Y V GYG + ++ VPS LP + + +D ++
Sbjct: 360 YEVDGYGSILFMDDANVPSLLSLPYLGFVERDDPVY 395
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 591 NYLKNICGLPISPYFSALKMRWLKD 665
N +K + GLPI P F K+R+ D
Sbjct: 547 NAMKAVNGLPIHPLFKKSKIRYAPD 571
>SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 25.8 bits (54), Expect = 6.7
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 273 AECSEELASYQMDKTEVQPHEGWSEQDPYEIMHHIKLCAENAIDQLTEL 419
AEC +E+ + K E++ H E +MH L + ID+L +L
Sbjct: 34 AECIDEM---HIAKHEIRAHFQEEEFQQIRLMHKRMLLRDEKIDELAKL 79
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 564 GSRLPCYRYVCRSRLWRGAMAPRCICPKL*LSPSDS 457
G+RL R+ C LW CI P+L +SP D+
Sbjct: 1068 GTRLEHARFNCARYLW-----TLCIAPRLKMSPHDA 1098
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 399 IDQLTELGYSKDDIITLGITNQRETTIAWDKYTGEPL 509
ID + + +S DD L + + + I WD +TGE L
Sbjct: 255 IDTVAYIRWSPDDRYLLSCSCDK-SVILWDAFTGEKL 290
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = -2
Query: 336 PRGAAPPSCPSDTRPVPP-SIP 274
P+ AAPP + T P PP S+P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVP 1715
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -3
Query: 545 IGTYVVPGYGGVQWLPGV 492
IGTY P G +W PGV
Sbjct: 195 IGTYTSPKPGEFEWQPGV 212
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 25.4 bits (53), Expect = 8.9
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = +3
Query: 474 TIAWDKYTGEPLHPAIAWNDIRTDSTVDAILAKVPDRNKNYLKNICGLPISPYFSALKMR 653
T+ D Y PLH DIR+ + A+ R N +C LP+S + +++
Sbjct: 707 TVVMDIYFIVPLH------DIRSLAVTTALKMLCSIRENNLDGLVCSLPLSSFIASILNS 760
Query: 654 WLKDN 668
DN
Sbjct: 761 RKSDN 765
>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
Rad4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 648
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -1
Query: 451 PKVMMSSFEYPNSVNWSMAFSAQSFMWCIISYGSCSDQPS 332
P M + F+ ++ W++ +++W II G DQ S
Sbjct: 444 PFSMKTRFKIQHATEWNVRVVGVAWLWNIIQSGKFIDQVS 483
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -3
Query: 323 HLRLVHLIRGQFLRAFRFVYYKSDGLGSVIYNSDQGLLGAVPDWHF 186
H+ L+H + GQF +F+ SD L + + L WHF
Sbjct: 331 HINLLHALTGQFATSFKIEGVLSDVLFTSDGSEMLVLSYGAEVWHF 376
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Frame = +3
Query: 396 AIDQLTELGYSKDDIITLG-ITNQRETTIAWDKYTGEPLH-----PAIAWNDI 536
A+D++ GY D II G I +++ ++ ++ E + P + W+DI
Sbjct: 605 AVDRIKRTGYDNDSIILSGPIITEQDVDVSINRIRKEKSNTIFTVPKVNWDDI 657
>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
pyridoxine, pyridoxal, and pyridoxamine
Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 348 ALTNPRGAAPPSCPSDTRPVPPSI 277
ALTN G P P DT VP S+
Sbjct: 187 ALTNVAGGIPDLFPEDTAGVPMSL 210
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,020,682
Number of Sequences: 5004
Number of extensions: 59911
Number of successful extensions: 197
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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