Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_H14
(760 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1370 - 32990002-32990244,32990950-32991943,32992019-329922... 146 2e-35
02_01_0580 + 4303020-4303211,4303838-4303879,4304538-4304646,430... 32 0.43
12_02_1039 + 25610200-25610538,25611022-25611143,25611243-256113... 31 1.00
12_02_1092 - 26011445-26012071,26012826-26014022,26014083-260142... 29 3.0
01_06_0852 + 32463784-32463834,32463957-32464628,32465515-324656... 29 4.0
02_03_0237 - 16723400-16723594,16723658-16723712,16724016-167241... 29 5.3
10_07_0029 + 12031711-12032464,12044289-12044386 28 7.0
05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241 28 7.0
11_02_0082 - 8088169-8088284,8088613-8088697,8090344-8090442,809... 28 9.3
08_02_0092 + 12265446-12265809,12266147-12266743,12266792-122668... 28 9.3
04_03_0989 - 21475147-21475361,21477029-21477074,21477364-21479292 28 9.3
04_01_0548 + 7103540-7103972,7104081-7104667 28 9.3
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767... 28 9.3
>04_04_1370 -
32990002-32990244,32990950-32991943,32992019-32992240,
32993413-32993543
Length = 529
Score = 146 bits (354), Expect = 2e-35
Identities = 72/172 (41%), Positives = 105/172 (61%), Gaps = 1/172 (0%)
Frame = +3
Query: 222 VAVIDDGTKTVRFVIYEAECSEELASYQMDKTEVQPHEGWSEQDPYEIMHHIKLCAENAI 401
VA ID GT + RF++Y+ ++ +AS+Q++ + P GW E DP EIM +K+C A+
Sbjct: 7 VASIDQGTTSTRFIVYDRH-AKPVASHQLEFKQHYPEAGWVEHDPMEIMESVKICMAKAL 65
Query: 402 DQLTELGYSKD-DIITLGITNQRETTIAWDKYTGEPLHPAIAWNDIRTDSTVDAILAKVP 578
D+ G++ D + +GITNQRETT+ W K TG PL+ AI W D RT + + +
Sbjct: 66 DKAAADGHNMDVGLKAIGITNQRETTVMWSKSTGLPLYNAIVWMDARTSPICRRLESDLS 125
Query: 579 DRNKNYLKNICGLPISPYFSALKMRWLKDNVKAVXRAXXDKRLLFGTVDSWI 734
++++ CGL IS YFSALK+ WL +NV AV A LFGT+D+W+
Sbjct: 126 GGRTHFVET-CGLAISTYFSALKVLWLIENVDAVKNAVRAGDALFGTIDTWL 176
>02_01_0580 +
4303020-4303211,4303838-4303879,4304538-4304646,
4304731-4304859,4305002-4305121,4305223-4305343,
4305888-4306044,4306377-4306427,4306573-4306695
Length = 347
Score = 32.3 bits (70), Expect = 0.43
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +3
Query: 492 YTGEPLHPAIAWNDIRTDSTVDAILAKVPDRNKNYLKNICGLPISPYFSALKMRWLKDNV 671
+TG+ I W D R + I A RN L+ CG +SP A K+ W+K+N+
Sbjct: 18 WTGDARRNIIVWMDHRAVDQAERINA----RNSPVLQ-YCGGGVSPEMQAPKLLWVKENL 72
Query: 672 K 674
+
Sbjct: 73 Q 73
>12_02_1039 +
25610200-25610538,25611022-25611143,25611243-25611390,
25611681-25611818,25612106-25612165,25612234-25612392,
25612714-25612912,25613156-25613260,25613339-25613475,
25613812-25614037,25614119-25614282,25614408-25614524,
25614622-25614864,25614959-25615054,25615270-25615287
Length = 756
Score = 31.1 bits (67), Expect = 1.00
Identities = 21/73 (28%), Positives = 34/73 (46%)
Frame = +3
Query: 339 WSEQDPYEIMHHIKLCAENAIDQLTELGYSKDDIITLGITNQRETTIAWDKYTGEPLHPA 518
W P+ + H K E +D+ ELG S DD++ L +T + + T + G P
Sbjct: 552 WYAHPPFRMHHFAKRLMEFELDR--ELGGSSDDLLKLSVTYRSDGTYFVETEDGS--SPG 607
Query: 519 IAWNDIRTDSTVD 557
+ D++ DS D
Sbjct: 608 L---DVKVDSRGD 617
>12_02_1092 - 26011445-26012071,26012826-26014022,26014083-26014286,
26014316-26014385,26014440-26014479,26015566-26015632,
26015718-26015740,26017985-26018081,26018553-26018614,
26018913-26019297,26019924-26020007,26020383-26020467,
26020579-26020790,26020881-26021030
Length = 1100
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 203 RLQEAPGRCYR*RNQDRQICNIRSGMLGGTGLVSDGQDGG 322
RL E C R R++ R + GG G+V+ G+DGG
Sbjct: 1001 RLMELERECSDMRQDIRKLGRGRRRLRGGGGIVAGGKDGG 1040
>01_06_0852 +
32463784-32463834,32463957-32464628,32465515-32465627,
32465999-32466261,32466803-32466924,32467176-32467253,
32467353-32467409,32467590-32467658,32467903-32467947,
32468303-32468398
Length = 521
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 258 FVIYEAECSEELASYQMDKTEVQPH 332
+V+YE E L+ Y+MDK +PH
Sbjct: 171 YVVYEMPKEENLSEYEMDKMMGRPH 195
>02_03_0237 -
16723400-16723594,16723658-16723712,16724016-16724126,
16724545-16724809,16725155-16725716
Length = 395
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -2
Query: 399 WHFQHKALCGALSRMDLALTNPRGAAPPSCPS-DTRPVPPSIPL 271
WH + L G + + P AAPP+ PS P PP PL
Sbjct: 137 WHRRDIILTGQCTSTTPTPSVPNTAAPPAPPSPPISPTPPGSPL 180
>10_07_0029 + 12031711-12032464,12044289-12044386
Length = 283
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 360 RMDLALTNPRGAAPPSCPSDTRPVPPSIP 274
R+ LA NP AA P+ P PVPP++P
Sbjct: 200 RIQLAPRNPPPAAAPAAP----PVPPAVP 224
>05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241
Length = 1445
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +3
Query: 234 DDGTKTVRFVIYEAECSEELASYQMDKTEVQPHE 335
D+G K+V+ + +++L S+ ++ +EV+PHE
Sbjct: 362 DEGDKSVQMHDFSKVETQDLVSHNVNVSEVRPHE 395
>11_02_0082 -
8088169-8088284,8088613-8088697,8090344-8090442,
8090537-8090609,8090694-8090804,8090901-8091074,
8091184-8091574,8091662-8092283,8092379-8093251,
8093294-8093800
Length = 1016
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -2
Query: 336 PRGAAPPSCPSDTRPVPPSIPL 271
P APPS P D P PP PL
Sbjct: 539 PSPPAPPSPPQDPAPSPPHDPL 560
>08_02_0092 +
12265446-12265809,12266147-12266743,12266792-12266861,
12267325-12267427
Length = 377
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2
Query: 336 PRGAAPPSCPSDTRPVPP 283
P APP CPS RP+PP
Sbjct: 86 PTSPAPPQCPS--RPIPP 101
>04_03_0989 - 21475147-21475361,21477029-21477074,21477364-21479292
Length = 729
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Frame = +3
Query: 387 AENAIDQLTELGYSKDDIITLGITNQRETTIAWDKYTGEPLHPAIAWND-----IRTDST 551
A+ D++ E I G AW + P +AWN +R D
Sbjct: 239 AQRLFDEMPEKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRL 298
Query: 552 VDA--ILAKVPDRNK 590
DA + +++PDR++
Sbjct: 299 DDALKLFSEMPDRDQ 313
>04_01_0548 + 7103540-7103972,7104081-7104667
Length = 339
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 236 IYNSDQGLLGAVPDWHFWFCTHNDKITTQKNY 141
++ DQG G + D F F N +TT+ NY
Sbjct: 180 VHGEDQGCEGGLMDDAFKFIIKNGGLTTESNY 211
>03_03_0008 - 13674602-13674708,13675272-13675439,13676169-13676787,
13676868-13677330,13677855-13678036,13678093-13678235,
13678315-13678423,13679000-13679456,13680490-13682473,
13682507-13682626,13682920-13682971
Length = 1467
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -2
Query: 345 LTNPRGAAPPSCPSDTRPVPPSIPLRILQ 259
L + R +PP PS PVPP P I Q
Sbjct: 1118 LPDDRPPSPPPLPSSPPPVPPPPPAPITQ 1146
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,334,882
Number of Sequences: 37544
Number of extensions: 424796
Number of successful extensions: 1562
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1556
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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