Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_H14
(760 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17612| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 5e-11
SB_32284| Best HMM Match : FGGY_N (HMM E-Value=2.6e-07) 34 0.11
SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11) 31 1.0
SB_9857| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_43907| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 4.1
SB_48202| Best HMM Match : GARS_B (HMM E-Value=0.49) 29 5.4
SB_53010| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_29154| Best HMM Match : RNA_pol_Rpb2_7 (HMM E-Value=2.3) 28 9.5
SB_21482| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_44471| Best HMM Match : TFIIF_beta (HMM E-Value=1.3) 28 9.5
SB_43637| Best HMM Match : 7tm_1 (HMM E-Value=4.5e-07) 28 9.5
SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_17612| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 566
Score = 65.3 bits (152), Expect = 5e-11
Identities = 26/45 (57%), Positives = 36/45 (80%)
Frame = +3
Query: 600 KNICGLPISPYFSALKMRWLKDNVKAVXRAXXDKRLLFGTVDSWI 734
++ICGLP++ YFSA+K+RWL DN + V +A D R +FGTVDSW+
Sbjct: 233 ESICGLPVNTYFSAVKLRWLIDNSEPVRKAVDDGRCMFGTVDSWL 277
Score = 62.5 bits (145), Expect = 4e-10
Identities = 27/75 (36%), Positives = 42/75 (56%)
Frame = +3
Query: 216 PLVAVIDDGTKTVRFVIYEAECSEELASYQMDKTEVQPHEGWSEQDPYEIMHHIKLCAEN 395
PLV ID GT + RF+++ + +E LA +Q++ + P EGW EQDP ++ + C E
Sbjct: 49 PLVGAIDQGTSSSRFLLFASNTAELLAFHQVEFQSIYPKEGWVEQDPKTLLSSVYQCMEQ 108
Query: 396 AIDQLTELGYSKDDI 440
+ EL + DI
Sbjct: 109 TLQSCKELNINPTDI 123
>SB_32284| Best HMM Match : FGGY_N (HMM E-Value=2.6e-07)
Length = 582
Score = 34.3 bits (75), Expect = 0.11
Identities = 27/98 (27%), Positives = 44/98 (44%)
Frame = +3
Query: 378 KLCAENAIDQLTELGYSKDDIITLGITNQRETTIAWDKYTGEPLHPAIAWNDIRTDSTVD 557
K+C+ +D+ G D +L + Q ++ +G+P I W D R S
Sbjct: 70 KVCS--GVDKSLVRGIGFDATCSLAVVGQDGRGLSVS-LSGDPQKDIIMWLDHRAISQAG 126
Query: 558 AILAKVPDRNKNYLKNICGLPISPYFSALKMRWLKDNV 671
AI ++ +Y+ G +SP A KM WLK+N+
Sbjct: 127 AI-----NQTDHYVLKYVGGLLSPEQQAAKMLWLKENL 159
>SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)
Length = 1771
Score = 31.1 bits (67), Expect = 1.0
Identities = 45/180 (25%), Positives = 74/180 (41%), Gaps = 16/180 (8%)
Frame = +3
Query: 183 PEMPVRDGSKKPLVAVIDDGTKTVRFVIYEAECSEELASYQMDKTEVQPHEGWSEQ--DP 356
PE P+ + LVA ++ G K F E E +E YQ+ V E E +
Sbjct: 1101 PEAPIAEAESILLVAEVEPGAK---FETCEPEYLKE--DYQLVYIHVADDETRVEDLGNK 1155
Query: 357 YEIMHHIKLCAENAIDQLTELGYSKDDIITLGITNQRETTIAWDKY-------TGEPLHP 515
Y+ +K+ A++++DQ + + D I L + + +D + EP P
Sbjct: 1156 YKCSLQVKIIAQSSLDQSSVEENTNDAAILL---EEEPIQLDFDDFLPSESMSPAEPSGP 1212
Query: 516 AIAWNDIRTDSTVDAILAKVPD-RNKNYLKNICGLPISPYFSALK------MRWLKDNVK 674
+ DI +S+ L +PD NY + L + F K +WLK+N+K
Sbjct: 1213 YGSPFDITIESSPATKLRDIPDIIPDNYKTDRWSLKRTKRFQNTKSEARAERKWLKENIK 1272
>SB_9857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1125
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = +3
Query: 477 IAWDKYTGEPLHPA--IAWNDIRTDSTVDAILAKVPDRNKNYLKNICGLPISPYFSALKM 650
+ W K TGEP PA + W+D +T + V R KN+ + P
Sbjct: 636 LVWAKMTGEPPWPAKLLTWSDDQTRALV-RFFGSAHQRAWVGSKNVKPIACKPEVKKRSQ 694
Query: 651 RWLK 662
RWL+
Sbjct: 695 RWLQ 698
>SB_43907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +3
Query: 420 GYSKDDIITLGITNQRETTIAWDKYTGEPLHPAIAWNDIRTDSTVDAILAKVP 578
G ++ D + +T RE + W+K GEP +PA A +R S L +VP
Sbjct: 108 GRARPDQVACAVTTLREAS--WEK--GEPYNPARAATTMRVVSWAKTELKQVP 156
>SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1741
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 519 IAWNDIRTDSTVDAILAKVPDRNKNYLKNICGLPIS 626
++ N + DSTVD ++ K+P R Y NICG S
Sbjct: 801 VSLNYSKDDSTVDFVVKKLPKR-PGYHCNICGAGFS 835
>SB_48202| Best HMM Match : GARS_B (HMM E-Value=0.49)
Length = 293
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 156 CDFVIMSAEPEMPVRDGSKKPLVAVIDDGTKTVRFVI 266
C F+I A+ M V D +K PL+ D T++F+I
Sbjct: 175 CAFIINQAKMSMVVCDAAKIPLLLQRADQCPTLKFII 211
>SB_53010| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 787
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/79 (21%), Positives = 36/79 (45%)
Frame = +3
Query: 504 PLHPAIAWNDIRTDSTVDAILAKVPDRNKNYLKNICGLPISPYFSALKMRWLKDNVKAVX 683
P H AW ++ T+ A + + + L+++C +P ++ + ++ V+ V
Sbjct: 333 PCHNNHAWAELPTEPPAIASVHGLDFEAEGKLRSLCQGKAAPRATSAATKTREEKVREVL 392
Query: 684 RAXXDKRLLFGTVDSWICG 740
+K +L T W+CG
Sbjct: 393 IRFINKAILRST-RIWLCG 410
>SB_29154| Best HMM Match : RNA_pol_Rpb2_7 (HMM E-Value=2.3)
Length = 416
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +2
Query: 473 NYSLGQIHRGAIAPRHSLE--RHTYR*HGRRDPSQSAGPE*ELSEEHLRSTDIALLQRAE 646
++SLG + I R +E HT + RRD + E S++H + L R
Sbjct: 317 HFSLGATGKHEIMRRAGIEVGSHTEKESKRRDRERVEKAEKRASDQHKKYRQARSLARKR 376
Query: 647 DALVEGQREGS 679
D + +REG+
Sbjct: 377 DEELRLEREGT 387
>SB_21482| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 108
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +2
Query: 473 NYSLGQIHRGAIAPRHSLE--RHTYR*HGRRDPSQSAGPE*ELSEEHLRSTDIALLQRAE 646
++SLG + I R +E HT + RRD + E S++H + L R
Sbjct: 9 HFSLGATGKHEIMRRAGIEVGSHTEKESKRRDRGRVEKAEKRASDQHKKYRQARSLARKR 68
Query: 647 DALVEGQREGS 679
D + +REG+
Sbjct: 69 DEELRLEREGT 79
>SB_44471| Best HMM Match : TFIIF_beta (HMM E-Value=1.3)
Length = 670
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +2
Query: 473 NYSLGQIHRGAIAPRHSLE--RHTYR*HGRRDPSQSAGPE*ELSEEHLRSTDIALLQRAE 646
++SLG + I R +E HT + RRD + E S++H + L R
Sbjct: 571 HFSLGATGKHEIMRRAGIEVGSHTEKESKRRDRERVEKAEKRASDQHKKYRQARSLARKR 630
Query: 647 DALVEGQREGS 679
D + +REG+
Sbjct: 631 DEELRLEREGT 641
>SB_43637| Best HMM Match : 7tm_1 (HMM E-Value=4.5e-07)
Length = 353
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -3
Query: 611 ADVLQIILIPVRHFG*DRVYRAI-GTYVVPGYGGVQWLPGVFVPSYSCLPLI 459
AD LQ + I R+ D + I GTY +PG Q+L GVF ++ + +I
Sbjct: 53 ADFLQGV-IACRNLAHDALEAYITGTYQIPGLRSYQFLLGVFTFTFEIMVVI 103
>SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1028
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 309 DKTEVQPHEGWSEQDPYEIMHHIKLCAENAIDQLTELGYSKDDIITLG 452
D ++V E WSE D ++++HI + L +LG DI+TLG
Sbjct: 338 DGSDVGVVEFWSEMDETKVIYHID---DEDTPYLVKLG-KTPDIVTLG 381
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,219,611
Number of Sequences: 59808
Number of extensions: 479711
Number of successful extensions: 1376
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1373
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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