Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_H14
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U38378-4|AAA79749.1|  502|Caenorhabditis elegans Hypothetical pr...   175   3e-44
U88181-3|AAB42302.2|  523|Caenorhabditis elegans Hypothetical pr...    42   4e-04
AC006780-7|AAF60648.1|  394|Caenorhabditis elegans Hypothetical ...    31   1.2  
AC006780-6|AAF60647.1|  401|Caenorhabditis elegans Hypothetical ...    31   1.2  
U88184-12|AAM98020.1|  570|Caenorhabditis elegans Hypothetical p...    28   6.3  
U88173-9|AAK21384.3|  320|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U50193-3|AAP68918.1| 1189|Caenorhabditis elegans Nuclear pore co...    28   6.3  
Z68760-2|CAA92995.1|  597|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>U38378-4|AAA79749.1|  502|Caenorhabditis elegans Hypothetical
           protein R11F4.1 protein.
          Length = 502

 Score =  175 bits (426), Expect = 3e-44
 Identities = 77/172 (44%), Positives = 113/172 (65%)
 Frame = +3

Query: 219 LVAVIDDGTKTVRFVIYEAECSEELASYQMDKTEVQPHEGWSEQDPYEIMHHIKLCAENA 398
           L+A ID GT + RF+++EA+  E + S+Q++  ++ PH GW E DP E+   +  C    
Sbjct: 3   LLAAIDQGTSSSRFLVFEADTGELVTSHQIEVRQLFPHGGWVEMDPMELYDTVVSCISKT 62

Query: 399 IDQLTELGYSKDDIITLGITNQRETTIAWDKYTGEPLHPAIAWNDIRTDSTVDAILAKVP 578
           I++L  LG S D+I ++G+ NQRET+I WDK TG+PL+ AI W D RT S  D  +++  
Sbjct: 63  IEKLENLGISADEIKSVGVANQRETSIVWDKETGKPLYNAIVWLDTRTSSLADEAISRTA 122

Query: 579 DRNKNYLKNICGLPISPYFSALKMRWLKDNVKAVXRAXXDKRLLFGTVDSWI 734
            ++K+  +   GLPI PYFSALK++WL  NV  V +A  D  L+FGTVD+W+
Sbjct: 123 SKSKDEFRAKTGLPIHPYFSALKLKWLFQNVPEVKKAYADGNLMFGTVDTWL 174


>U88181-3|AAB42302.2|  523|Caenorhabditis elegans Hypothetical
           protein C55B6.1a protein.
          Length = 523

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 4/113 (3%)
 Frame = +3

Query: 222 VAVIDDGTKTVRFVIYEAECSEELASYQMDKTEV----QPHEGWSEQDPYEIMHHIKLCA 389
           V  +D GT T+R V+Y+++C E   SYQ     +       E   E +P ++        
Sbjct: 9   VLTVDIGTTTIRSVVYDSKCKER-GSYQEKVNTIYTTRNDDEVLVEIEPEQLFLQFLRVI 67

Query: 390 ENAIDQLTELGYSKDDIITLGITNQRETTIAWDKYTGEPLHPAIAWNDIRTDS 548
           + A + L    +     + +G+  QR + + W+K T +     I WND R ++
Sbjct: 68  KKAYETLPPNAH-----VDVGLCTQRNSIVLWNKRTLKEETRIICWNDKRANN 115


>AC006780-7|AAF60648.1|  394|Caenorhabditis elegans Hypothetical
           protein Y47D9A.1b protein.
          Length = 394

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 2/122 (1%)
 Frame = +3

Query: 363 IMHHI-KLCAENAIDQLTELGYSKDDIITLGITNQRETTIAWDKYTGEPLHPAIAWNDIR 539
           I HHI +LC  + + ++  LG+   D+ T  I+  ++T     KY  EP     A   + 
Sbjct: 31  IEHHIDQLCQLSGLSEILLLGFFPSDVFTDFISRCQQTYRVSIKYLEEPNPLGTAGGLV- 89

Query: 540 TDSTVDAILAKVPDRNKNYLKNICG-LPISPYFSALKMRWLKDNVKAVXRAXXDKRLLFG 716
             S    ILA  PD       ++CG LPI    + L        +     A   + + FG
Sbjct: 90  --SFKKQILAGDPDAVFVINADVCGDLPIEDMGAKLDSLSGSSMLMLTTEATRQQSINFG 147

Query: 717 TV 722
           +V
Sbjct: 148 SV 149


>AC006780-6|AAF60647.1|  401|Caenorhabditis elegans Hypothetical
           protein Y47D9A.1a protein.
          Length = 401

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 2/122 (1%)
 Frame = +3

Query: 363 IMHHI-KLCAENAIDQLTELGYSKDDIITLGITNQRETTIAWDKYTGEPLHPAIAWNDIR 539
           I HHI +LC  + + ++  LG+   D+ T  I+  ++T     KY  EP     A   + 
Sbjct: 38  IEHHIDQLCQLSGLSEILLLGFFPSDVFTDFISRCQQTYRVSIKYLEEPNPLGTAGGLV- 96

Query: 540 TDSTVDAILAKVPDRNKNYLKNICG-LPISPYFSALKMRWLKDNVKAVXRAXXDKRLLFG 716
             S    ILA  PD       ++CG LPI    + L        +     A   + + FG
Sbjct: 97  --SFKKQILAGDPDAVFVINADVCGDLPIEDMGAKLDSLSGSSMLMLTTEATRQQSINFG 154

Query: 717 TV 722
           +V
Sbjct: 155 SV 156


>U88184-12|AAM98020.1|  570|Caenorhabditis elegans Hypothetical
           protein F36H5.2b protein.
          Length = 570

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
 Frame = +3

Query: 303 QMDKTEVQPHEGWSEQDP--YEIMHHIKLC--AENAIDQLTELGYSKDDIITLGITNQRE 470
           Q   TE++    W  Q    Y+ +     C    N +DQL +   + + + T G   +R 
Sbjct: 192 QWGNTELRYEIPWRIQAKRTYDFLEMYLFCDGEGNGLDQLIKTEVTCNLVSTNGNNFRRT 251

Query: 471 TTIAWDKYTGEPLHPAIAWNDI 536
           T + + K  G+ +   I WND+
Sbjct: 252 TELNFKKPGGQSISEFIKWNDM 273


>U88173-9|AAK21384.3|  320|Caenorhabditis elegans Hypothetical
           protein F46F11.7 protein.
          Length = 320

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 258 FVIYEAECSEELASYQMDKTEVQPHEGWSEQDPYEIMHH 374
           F I  A+C   +   Q +K +++P E      P+EI HH
Sbjct: 135 FCIGHADCGPNMLC-QQNKCQLKPQEPLCNCQPHEICHH 172


>U50193-3|AAP68918.1| 1189|Caenorhabditis elegans Nuclear pore
           complex protein protein10, isoform b protein.
          Length = 1189

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
 Frame = +3

Query: 417 LGYSKDDIITLGITNQRETTIAWDK-----YTGEPLHPAIAWNDI-RTDSTVDAILAKVP 578
           +GY K  +I +GI   R + + W +     ++ +P H  + +  I RT    +  L  + 
Sbjct: 600 IGYGKSKLIDIGIVKGRSSHVGWSETGCLVWSAQPRHNQVLFGTIDRTSDVNENTLISML 659

Query: 579 DRN 587
           D N
Sbjct: 660 DVN 662


>Z68760-2|CAA92995.1|  597|Caenorhabditis elegans Hypothetical
           protein F36H1.3 protein.
          Length = 597

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -2

Query: 330 GAAPPSCPSDTRPVPPSIP 274
           GA P S P  T P PP+IP
Sbjct: 491 GAQPSSAPVHTPPAPPAIP 509


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,998,308
Number of Sequences: 27780
Number of extensions: 355605
Number of successful extensions: 1074
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)