Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_H14
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   2.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   4.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   5.4  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   5.4  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   5.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   9.5  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 639 ALKMRWLKDNVKA 677
           AL +RWL+DN +A
Sbjct: 227 ALALRWLRDNAEA 239


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 639 ALKMRWLKDNVKA 677
           AL +RWL+DN +A
Sbjct: 227 ALALRWLRDNAEA 239


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -2

Query: 378 LCGALSRMDLALTNPRGAAPPSCPSDTRPVPPSIPL 271
           + GA S   +    P   A  S  +   P PPS+P+
Sbjct: 24  VAGAASLTLVKAETPEHLAGTSTTAAATPTPPSVPV 59


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 311 VHLIRGQFLRAFRFVYYKSDGLGSVIY 231
           VH+  GQFL+AF           SVI+
Sbjct: 129 VHVNEGQFLKAFVAAVLTRQDTQSVIF 155


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -1

Query: 220 RGFLEPSRTGISGSALIMTKSQHKKII*KKNYNLANIRKNIPS 92
           R + E S+ G S       +S+  KII   NYN  N   N  S
Sbjct: 279 RKYRETSK-GRSRDRTERERSKETKIISSNNYNYKNYNNNYNS 320


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -1

Query: 220 RGFLEPSRTGISGSALIMTKSQHKKII*KKNYNLANIRKNIPS 92
           R + E S+ G S       +S+  KII   NYN  N   N  S
Sbjct: 290 RKYRETSK-GRSRDRTERERSKETKIISSNNYNYKNYNNNYNS 331


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 697 ISDCYSALWTRGSVEFNRRSP 759
           + +   A+WT   VEF +R P
Sbjct: 565 VENVKGAVWTVDEVEFYKRRP 585


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 210 KKPLVAVIDDGTKTVRFVIYEAECSEELASYQMD 311
           +KPLV  I+      RF+   A+  ++  S + D
Sbjct: 505 EKPLVREIEKTIDDARFIAQHAKNKDKFESVEED 538


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,435
Number of Sequences: 438
Number of extensions: 4498
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)