Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_H13
(810 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb... 29 0.59
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 28 1.8
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 27 4.2
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 27 4.2
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa... 27 4.2
SPAC589.08c |dam1||DASH complex subunit Dam1|Schizosaccharomyces... 26 5.5
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 26 5.5
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 7.3
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 26 7.3
>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 29.5 bits (63), Expect = 0.59
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = +3
Query: 246 KVVQIYESFFRGEDLTTDNPTFWDEFFLLKPKIPQLEAEIHKLSTEQL-INMKE--SMNI 416
K+V Y+ N FW EFFLL+P++ L + + ++L +N + SM +
Sbjct: 12 KIVFYYKCLLNKNWNEPINNIFWGEFFLLQPRLEVLSQLLRECPKQELTVNGPKFHSMYL 71
Query: 417 LVEQCIEMLRQDHHIR 464
+ + ++ + IR
Sbjct: 72 YISEILKSKAESLRIR 87
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 437 FYTLFNQYIHTFFHVYQLFCGQFVYFCF-QLWYFWL 333
F TLF ++ F V+Q+FC V +C WYF L
Sbjct: 189 FGTLFKEHAVAPFFVFQIFC--CVLWCLDDYWYFSL 222
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 4.2
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -2
Query: 437 FYTLFNQYIHTFFHVYQLFCGQFVYFCFQLWYFWLQKKEFIPKSRVIS 294
FY+L ++ TFFH Q C + W+F+ K K+ ++S
Sbjct: 341 FYSLHFLWLCTFFHALQ--CA-IISSIVSQWFFYRDTKSSATKTNLVS 385
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 26.6 bits (56), Expect = 4.2
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -2
Query: 395 VYQLFCGQ-FVYFCFQLWYFWLQKKEFIPKSRVISR*VLSSKERFINLYNLL 243
V L C Q FV+ F L + KE + ++++ + + + K+ + +YN+L
Sbjct: 57 VTSLRCLQLFVHLTFLLGVYTQLPKEMLSQAKIKALPIYTPKKNLVQIYNIL 108
>SPAC2G11.13 |atg22||autophagy associated protein Atg22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 26.6 bits (56), Expect = 4.2
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 424 STNIFILSFMFISCSVDSLCISASSCGIFGFRRKNSS 314
S +F+ S +FI+C + + S SS IFG R N S
Sbjct: 328 SIRLFLFSRLFINCGIQT---SLSSAVIFGKARLNLS 361
>SPAC589.08c |dam1||DASH complex subunit Dam1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 155
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +3
Query: 510 YQRLEQDSNINIKTIMIGQENADTKMVKLFEQCSIILSGDVHESLKSM 653
YQ+ Q+ N+ + I ENA ++ F + +L +V E K M
Sbjct: 4 YQKATQNPLENVDNVKIESENAIPSNLQAFTKSLAVLDDNVSEFRKRM 51
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +3
Query: 186 NFTMAMRKRSGSGSKRH--LKEKVVQIYESFFRGEDLTTDNPTFWDEFF 326
+ T+A+ + + SK H + K++ I E + + + D+ FW +FF
Sbjct: 13 SITLALYEIDANFSKCHRTVTTKILPIVEKYAKNCNTIWDSSKFWKQFF 61
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 25.8 bits (54), Expect = 7.3
Identities = 13/62 (20%), Positives = 31/62 (50%)
Frame = +3
Query: 147 KIRNEQKNIFKI*NFTMAMRKRSGSGSKRHLKEKVVQIYESFFRGEDLTTDNPTFWDEFF 326
+++N + +IF + ++ + G + + ++K +++ F + +D PT WD F
Sbjct: 774 RLKNARVSIFLDDDVSLLL-DCGGFTTLKKTEKKYAEMHAKFIQIHTKNSDVPTLWDRFL 832
Query: 327 LL 332
L
Sbjct: 833 AL 834
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -2
Query: 434 YTLFNQYIHTFFHVYQLFCGQF-VYFCFQLWYFWLQKKEFIPKSRVI 297
Y+ + I +F+ +++ G F VY + L + W+ EF+P ++
Sbjct: 572 YSFASIRISSFYSPAKVWGGAFLVYILYSLAHVWVVAYEFVPGGPIL 618
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,131,124
Number of Sequences: 5004
Number of extensions: 62809
Number of successful extensions: 188
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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