Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_H13
         (810 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00065-2|AAL27237.1|  672|Caenorhabditis elegans Prion-like-(q/n...    33   0.32 
U88308-2|AAM15557.1|  313|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U88308-1|AAB42324.2|  461|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z72505-5|CAE11304.1|  333|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U97552-1|AAB52866.2|  109|Caenorhabditis elegans Hypothetical pr...    28   9.1  

>U00065-2|AAL27237.1|  672|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 25
           protein.
          Length = 672

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = -3

Query: 448 CLNISIHCSTNIFILSFMFISCSVDSLCIS 359
           CLN ++ C+ NI + +F  +SCS + +CIS
Sbjct: 364 CLNNAV-CTNNICVSTFCSVSCSTNQVCIS 392


>U88308-2|AAM15557.1|  313|Caenorhabditis elegans Hypothetical
           protein C32E8.6b protein.
          Length = 313

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 104 GINIIVLNTTYNKSVLTTYVRK*IMNFVLFS 12
           G+ +I LN +Y K  +  Y+ K I NF++ S
Sbjct: 79  GVTVIPLNPSYKKYEIDEYISKSIANFIIVS 109


>U88308-1|AAB42324.2|  461|Caenorhabditis elegans Hypothetical
           protein C32E8.6a protein.
          Length = 461

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 104 GINIIVLNTTYNKSVLTTYVRK*IMNFVLFS 12
           G+ +I LN +Y K  +  Y+ K I NF++ S
Sbjct: 79  GVTVIPLNPSYKKYEIDEYISKSIANFIIVS 109


>Z72505-5|CAE11304.1|  333|Caenorhabditis elegans Hypothetical
           protein C50C10.8 protein.
          Length = 333

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 453 GLVSTFLYTVQPIYSYFLSCLSAVLWTVCVFLLPAVV 343
           GL++++   +QP YS+ L  L A     C+ +LP +V
Sbjct: 95  GLITSWCAKLQPNYSFTLLILVADFLNYCILILPFLV 131


>U97552-1|AAB52866.2|  109|Caenorhabditis elegans Hypothetical
           protein W05H7.2 protein.
          Length = 109

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 464 PYMMVLSQHFYTLFNQYIHTFFHVYQLFC 378
           P +  +  +F+  F Q+   FFH Y+LFC
Sbjct: 15  PSLAKILFNFFLHFLQFFSFFFHDYRLFC 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,928,539
Number of Sequences: 27780
Number of extensions: 342193
Number of successful extensions: 994
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)