Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_H12
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    28   1.6  
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    27   2.1  
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    27   2.8  
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ...    27   3.7  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    26   4.9  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    26   4.9  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    26   4.9  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    25   8.6  
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P...    25   8.6  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   8.6  
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po...    25   8.6  
SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces po...    25   8.6  

>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 178 HMILGEGYVRLLL-EANHDVTYLTPAPLKIGHPKLRQIDVSSTEKGFDFD 324
           H I+G+  ++ +  E +H V  LT    K   P+ R+IDV     G+D +
Sbjct: 301 HQIMGDTDIQSIKNEGDHLVVQLTSQMDKSKKPETRKIDVLYVATGYDHE 350


>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
 Frame = +1

Query: 346 LINKEVDLSDTNHKYIVMQYVTESLLMHPNVQKLLLDTDQTFDAVIVEWMYSDLYS-GF- 519
           L+N  + LS TN ++  +  V ESL    N    LL        V+      D  +  F 
Sbjct: 141 LLNTNLTLSSTNREFYYISEVLESLHYQGNKDPYLL----YLSGVVYRKRKQDSKAIDFL 196

Query: 520 -STVFNCPFIWSSSLE 564
            S V   PF WS+ LE
Sbjct: 197 KSCVLKAPFFWSAWLE 212


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 436 RWDALTMTRLHIALRYTCDSYLIDRLL 356
           RW   T  RLH  LR+  +++L+D LL
Sbjct: 239 RWRQKTRERLHQKLRFQKNAFLLDVLL 265


>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 425

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = +1

Query: 550 SSSLEPHPMILRLIDSLPNPAYFPDHTSSLEPPYTFLERVEELWNIAKTLYNRWRLKEKE 729
           SSS+ P    +++   LP  A   D  SS       LER   L  ++  L N    K +E
Sbjct: 82  SSSISPQSKKIKVALQLPGAARIIDEASSETSIKQLLERHSLLTKVSHVLINGRNFKSEE 141


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = -1

Query: 419 NDSVTYCITIYL*FVSDRSTSL----LINFLKLNRPSKSKPFSVEDTSI 285
           NDS+ +CI  +L ++   + SL    L+ F  +  P K K  S++D S+
Sbjct: 501 NDSLHHCIFPWLPYLEKHADSLLQSVLVQFSLILSPWKIKNGSIDDFSV 549


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
 Frame = +1

Query: 340  KKLINKEV---DLSDTNHKYIVMQYVTESLLM 426
            K+L NKE    +LSD + KYI +Q + E+LL+
Sbjct: 1131 KELENKEEKCQNLSDASLKYIELQEIHENLLL 1162


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 499 YTSTQQSRHQTFDLYPKA 446
           Y  +Q +RH  FD++PK+
Sbjct: 181 YAGSQLNRHSVFDIFPKS 198


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 2/133 (1%)
 Frame = +1

Query: 121 LVXCSAXKLLAVFPFPGKXHMILGEGYVRLLLEANHDVTYLT-PAPLKIGHPK-LRQIDV 294
           LV     K+  VFP PG     + +    L    + + + +  P PL+ G  +  R++ V
Sbjct: 144 LVTADQAKMSGVFPLPGAPRAAVTDPEKLLEFARSAEGSIIAPPPPLQPGASRQARRLVV 203

Query: 295 SSTEKGFDFDGLFNFKKLINKEVDLSDTNHKYIVMQYVTESLLMHPNVQKLLLDTDQTFD 474
           +     F  D   +F     +++ +S T HK     + + ++    N   L + T +  D
Sbjct: 204 TGIPNEFVEDAFVSF----IEDLFISTTYHKPETKHFSSVNVCKEENFAILEVATPE--D 257

Query: 475 AVIVEWMYSDLYS 513
           A  +  + S+ YS
Sbjct: 258 ATFLWGLQSESYS 270


>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
           Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 389

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 84  FKSDYCLKHSDRCDSDERA 28
           F  DYC+ HS + D +E A
Sbjct: 359 FDPDYCISHSSKPDGNELA 377


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 22/84 (26%), Positives = 33/84 (39%)
 Frame = +1

Query: 316 DFDGLFNFKKLINKEVDLSDTNHKYIVMQYVTESLLMHPNVQKLLLDTDQTFDAVIVEWM 495
           D + L + +   N+E +   T  K   +  +T S L         L+TD+  D    +  
Sbjct: 189 DKESLTDLRFFSNEEAESKVTRVKSSCL--LTLSFLFKQTADLENLETDKKIDK---QTF 243

Query: 496 YSDLYSGFSTVFNCPFIWSSSLEP 567
            S LY   ST+F     WS    P
Sbjct: 244 KSSLYENLSTLFKSDEFWSLVSSP 267


>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +1

Query: 577 ILRLIDSLPNPAYFPDHTSSLEPP 648
           I+ L   LPNP YFP      E P
Sbjct: 38  IISLAGGLPNPEYFPIREMDAEIP 61


>SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 454 DTDQTFDAVIVEWMYSDLYSGFSTVFNCP-FIWSS 555
           +  +  DAV V W+ S ++  F  V N P  +W+S
Sbjct: 75  EVTKVVDAVDVLWVNSAVFHSFGPVVNTPDDVWNS 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,786,775
Number of Sequences: 5004
Number of extensions: 57232
Number of successful extensions: 175
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)