Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_H12
(743 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024759-6|AAP13761.1| 527|Caenorhabditis elegans Hypothetical ... 32 0.37
Z50006-2|CAD44148.1| 523|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z50006-1|CAA90301.1| 190|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z71177-8|CAA94866.2| 525|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z48717-2|CAA88604.1| 520|Caenorhabditis elegans Hypothetical pr... 29 3.5
AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical... 29 3.5
U23518-8|AAO38654.1| 400|Caenorhabditis elegans Nuclear hormone... 28 6.1
U23518-7|AAO38655.1| 440|Caenorhabditis elegans Nuclear hormone... 28 6.1
U23518-6|AAD31548.2| 446|Caenorhabditis elegans Nuclear hormone... 28 6.1
U23518-5|AAO38653.1| 448|Caenorhabditis elegans Nuclear hormone... 28 6.1
U23518-4|ABB88231.1| 450|Caenorhabditis elegans Nuclear hormone... 28 6.1
AF083234-1|AAD03692.1| 400|Caenorhabditis elegans nuclear recep... 28 6.1
AF083233-1|AAD03691.1| 458|Caenorhabditis elegans nuclear recep... 28 6.1
U88311-5|AAB42343.1| 531|Caenorhabditis elegans Udp-glucuronosy... 28 8.0
>AC024759-6|AAP13761.1| 527|Caenorhabditis elegans Hypothetical
protein Y37E11AR.5 protein.
Length = 527
Score = 32.3 bits (70), Expect = 0.37
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = +1
Query: 109 LCLXLVXCSAXKLLAVFPFPGKXHMILGEGYVRLLLEANHDVTYLTPAPLKI 264
L L S K+L P G HM +L+EA HDVT+L P + I
Sbjct: 8 LLFVLPAASCYKILVSVPKFGFSHMQTMGKLADILVEAGHDVTFLMPVDVPI 59
>Z50006-2|CAD44148.1| 523|Caenorhabditis elegans Hypothetical
protein T07C5.1c protein.
Length = 523
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 133 SAXKLLAVFPFPGKXHMILGEGYVRLLLEANHDVTYLTPAPLKI 264
+A K+L P K H++L Y LL A HD P+ K+
Sbjct: 24 NAAKILVYCPSISKSHVLLCSKYADLLHNAGHDTVLFIPSYSKL 67
>Z50006-1|CAA90301.1| 190|Caenorhabditis elegans Hypothetical
protein T07C5.1b protein.
Length = 190
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 133 SAXKLLAVFPFPGKXHMILGEGYVRLLLEANHDVTYLTPAPLKI 264
+A K+L P K H++L Y LL A HD P+ K+
Sbjct: 24 NAAKILVYCPSISKSHVLLCSKYADLLHNAGHDTVLFIPSYSKL 67
>Z71177-8|CAA94866.2| 525|Caenorhabditis elegans Hypothetical
protein AC3.2 protein.
Length = 525
Score = 29.1 bits (62), Expect = 3.5
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Frame = +1
Query: 91 MLRAIXLCLXLVXCSAXKLLAVFPFPGKXHMILGEGYVRLLLEANHDV----TYLTPAPL 258
M + L L L+ A K+L P + H+I L++A HDV T P
Sbjct: 1 MYTFLFLLLSLLAVDAGKILVYSPSISRSHLISNGRIADALVDAGHDVVMFITEYEPLTE 60
Query: 259 KIGHPKLRQIDVS--STEKGFDFDGL 330
G K + I + ST+ D DG+
Sbjct: 61 FTGTKKAKVITMKGFSTKFAEDMDGI 86
>Z48717-2|CAA88604.1| 520|Caenorhabditis elegans Hypothetical
protein T10B9.2 protein.
Length = 520
Score = 29.1 bits (62), Expect = 3.5
Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 5/109 (4%)
Frame = +1
Query: 412 ESLLMHPNVQKLLLDTDQTFDAVIVEWMYSDLYSGFSTVFNCPFIWSSSLEPHPMILRLI 591
ES L + +D TFD +I + ++ L +G+ T S L HP I + +
Sbjct: 294 ESALGFAKTEIAKVDKQLTFDEIIGQ-LFVFLLAGYDTTALSLSYSSYLLARHPEIQKKL 352
Query: 592 DS-----LPNPAYFPDHTSSLEPPYTFLERVEELWNIAKTLYNRWRLKE 723
PNP D S L+ ++ ++ +A ++NR +KE
Sbjct: 353 QEEVDRECPNPEVTFDQISKLKYMECVVKEALRMYPLASIVHNRKCMKE 401
>AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical
protein Y75B8A.33 protein.
Length = 341
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +1
Query: 322 DGLFNFKKLINKEVDLSDTNHKYIVMQYVTESLLMHPNVQKLLLDTDQTFDAVI 483
D LF I + D++D YIV+ + SL+ NV + +L TDQ + +
Sbjct: 95 DILFVVSTFIGVDADINDRYSWYIVIYTLVGSLVYGWNVLRFVLWTDQKLEGFL 148
>U23518-8|AAO38654.1| 400|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform b protein.
Length = 400
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 319 FDGLFNFKKLINKEVDLSDTNHKYIVMQYVTESLLMH 429
F + N K L + ++LSD H V Q +TE+ +H
Sbjct: 360 FSSITNLKYLTSDNIELSDVLHVMEVDQLITEAFDVH 396
>U23518-7|AAO38655.1| 440|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform c protein.
Length = 440
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 319 FDGLFNFKKLINKEVDLSDTNHKYIVMQYVTESLLMH 429
F + N K L + ++LSD H V Q +TE+ +H
Sbjct: 400 FSSITNLKYLTSDNIELSDVLHVMEVDQLITEAFDVH 436
>U23518-6|AAD31548.2| 446|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform d protein.
Length = 446
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 319 FDGLFNFKKLINKEVDLSDTNHKYIVMQYVTESLLMH 429
F + N K L + ++LSD H V Q +TE+ +H
Sbjct: 406 FSSITNLKYLTSDNIELSDVLHVMEVDQLITEAFDVH 442
>U23518-5|AAO38653.1| 448|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform a protein.
Length = 448
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 319 FDGLFNFKKLINKEVDLSDTNHKYIVMQYVTESLLMH 429
F + N K L + ++LSD H V Q +TE+ +H
Sbjct: 408 FSSITNLKYLTSDNIELSDVLHVMEVDQLITEAFDVH 444
>U23518-4|ABB88231.1| 450|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform e protein.
Length = 450
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 319 FDGLFNFKKLINKEVDLSDTNHKYIVMQYVTESLLMH 429
F + N K L + ++LSD H V Q +TE+ +H
Sbjct: 410 FSSITNLKYLTSDNIELSDVLHVMEVDQLITEAFDVH 446
>AF083234-1|AAD03692.1| 400|Caenorhabditis elegans nuclear receptor
NHR-21b protein.
Length = 400
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 319 FDGLFNFKKLINKEVDLSDTNHKYIVMQYVTESLLMH 429
F + N K L + ++LSD H V Q +TE+ +H
Sbjct: 360 FSSITNLKYLTSDNIELSDVLHVMEVDQLITEAFDVH 396
>AF083233-1|AAD03691.1| 458|Caenorhabditis elegans nuclear receptor
NHR-21a protein.
Length = 458
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 319 FDGLFNFKKLINKEVDLSDTNHKYIVMQYVTESLLMH 429
F + N K L + ++LSD H V Q +TE+ +H
Sbjct: 418 FSSITNLKYLTSDNIELSDVLHVMEVDQLITEAFDVH 454
>U88311-5|AAB42343.1| 531|Caenorhabditis elegans
Udp-glucuronosyltransferase protein25 protein.
Length = 531
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +1
Query: 91 MLRAIXLCLXLVXCSAXKLLAVFPFPGKXHMILGEGYVRLLLEANHDVTYLTP 249
+++++ + L ++ +A +L P G H L EA H+VT++ P
Sbjct: 2 IIQSVFILLSVINVNAFNILVYSPSFGGSHTNFMARLADTLTEAGHNVTFVVP 54
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,331,033
Number of Sequences: 27780
Number of extensions: 318428
Number of successful extensions: 766
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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