Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_H10
         (535 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical...   176   7e-45
AF003135-8|AAK18984.1|  235|Caenorhabditis elegans Hypothetical ...    32   0.23 
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr...    29   2.1  

>AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical
           protein Y105E8A.16 protein.
          Length = 117

 Score =  176 bits (429), Expect = 7e-45
 Identities = 78/101 (77%), Positives = 95/101 (94%)
 Frame = +3

Query: 165 HRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTW 344
           HRIR+TLTS+NV+ LEKVCA LI+GAK + L VKGP+RMPTK+LRITTRKTPCGEGSKTW
Sbjct: 17  HRIRLTLTSQNVKPLEKVCAQLIDGAKNEHLIVKGPIRMPTKVLRITTRKTPCGEGSKTW 76

Query: 345 DRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 467
           DRFQMRIHKR+I+LH+P+E+++QITSI+IEPGV++EVT AD
Sbjct: 77  DRFQMRIHKRLINLHAPAEVLRQITSISIEPGVDIEVTRAD 117


>AF003135-8|AAK18984.1|  235|Caenorhabditis elegans Hypothetical
           protein W03F11.1 protein.
          Length = 235

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +2

Query: 44  ALXNFCLXSCF--SRPXFNKQHGSRCSVRQXHRATPGXGLPYSPHQDHSYFSQCA 202
           A   FC  S F  +RP +     +R    Q HR  PG  +PY PH DH+ F +C+
Sbjct: 56  ATTGFCYLSRFPTTRP-YPPPFPTRPRPTQGHRCYPGTRIPY-PH-DHTMFLECS 107


>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
           protein H03E18.1 protein.
          Length = 1147

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 207 LEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGE 329
           +E V A  + G KK+  + K   + PTK    +T++ P  E
Sbjct: 359 VELVTAKTVEGEKKETKKPKSTTKKPTKTAAASTKRPPTTE 399


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,889,974
Number of Sequences: 27780
Number of extensions: 220757
Number of successful extensions: 404
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)