Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_H08
         (742 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       25   0.85 
AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like prote...    22   4.5  
AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    22   6.0  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    22   6.0  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 36  VTXSVSYLHFKLXXXXXXQFICPKCPF 116
           +T    + H K+      +  CPKCPF
Sbjct: 212 ITKLEQWNHSKVHIREDKRLTCPKCPF 238


>AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like protein
           protein.
          Length = 160

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +2

Query: 83  LVSIYLPKMSIHIKDSDDLKTRLAEAGDKLVVIDFMATW 199
           L  +++ + SI+++  + LKT+     DKL +  + + W
Sbjct: 104 LYQVFVFRRSIYLQIKERLKTQGISHLDKLQLGQYFSPW 142


>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 549 FKFITDVKNIFSSFIKNVY 493
           F+F+  V NIF +F+  ++
Sbjct: 66  FRFVYAVYNIFGAFVMGLF 84


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
 Frame = -1

Query: 655 ISSFIYCLIIFNY---LFNYNRTNIFCIPEAA 569
           + S I+CL+ FN+    F  ++   FC   AA
Sbjct: 18  VQSEIFCLVNFNHRESYFRLSKAKSFCTFVAA 49


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,486
Number of Sequences: 336
Number of extensions: 2542
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)