Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_H08
         (742 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.0  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   3.0  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   9.2  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    21   9.2  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -2

Query: 438 LVSIYLCLRIVVLSLSTLAPE 376
           LVSI +C+ +VVL++   +P+
Sbjct: 317 LVSISICVTVVVLNVHFRSPQ 337


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -2

Query: 438 LVSIYLCLRIVVLSLSTLAPE 376
           LVSI +C+ +VVL++   +P+
Sbjct: 317 LVSISICVTVVVLNVHFRSPQ 337


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 196 GRHEVDHDELVAG 158
           G H+VD DEL+ G
Sbjct: 122 GDHDVDKDELITG 134


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -2

Query: 588 FAFQRLQTLKINIFKFITDVKNIFSSFIKNVYM 490
           F   + +T K+ I+K+   + +I  +  K V+M
Sbjct: 81  FLISQQKTSKLKIYKWNNQILHILWTSYKKVFM 113


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -2

Query: 588 FAFQRLQTLKINIFKFITDVKNIFSSFIKNVYM 490
           F   + +T K+ I+K+   + +I  +  K V+M
Sbjct: 64  FLISQQKTSKLKIYKWNNQILHILWTSYKKVFM 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,557
Number of Sequences: 438
Number of extensions: 2853
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)