Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_H06
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ...   108   8e-25
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    30   0.27 
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   2.5  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    26   4.4  
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    26   5.9  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    26   5.9  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    26   5.9  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    25   7.8  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    25   7.8  

>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score =  108 bits (259), Expect = 8e-25
 Identities = 78/200 (39%), Positives = 107/200 (53%), Gaps = 4/200 (2%)
 Frame = +2

Query: 101 VLDLDLFRADKDGNPDKIRENQKKRFKDVALVDAVVEQDTLWRKLRHEADNFNKLKNVCS 280
           +LD++LF+ +K GNP+ IRE+Q+KR  DV +VD V+E    W  LR E DN NK  N   
Sbjct: 1   MLDINLFQVEKGGNPEIIRESQRKRGADVGVVDKVIEMYKEWVSLRFELDNTNKSINRVQ 60

Query: 281 KEIGLKMKNKEPSGSEDEPVPSEIANNLVNLTGDNLKPLTVNQIKKVRVLIDNAISKNDE 460
           KEIGLKMK KE +        SE+     +LT            ++ + LI+   +KN E
Sbjct: 61  KEIGLKMKAKEDA--------SELLEEKNSLT------------ERKKNLIEQETAKNKE 100

Query: 461 GLLAAEKARSAALREVGNHLHESVPVDDDEDHNLVERTDGDCG--FRKK--YSHVDLICM 628
            L          +  +GN +H+SVPV  DED+N + R     G    KK   SH +++  
Sbjct: 101 ML--------NVVSSIGNIVHDSVPVSMDEDNNEIIRKWAPEGVTVEKKNCLSHHEVLTR 152

Query: 629 IDGMDGERGSAVXGGRGYYL 688
           +DG D ERG  V G RGY+L
Sbjct: 153 LDGYDPERGVKVSGHRGYFL 172


>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 284 EIGLKMKNKEPSGSEDEPVPSEIANNLVNLTGDNLKPLTVNQIK 415
           EIG K K+K P+    E  P  I+  L +L G+N  PL + Q K
Sbjct: 16  EIGNKQKSKTPT----ERRPEGISRELYSLLGENSAPLAIYQKK 55


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +2

Query: 485  RSAALR----EVGNHLHESVPVDDDEDHNLVERTDGDCGFRKK 601
            RS+ LR    +  N++ E + + D  DH + ER  G  G RKK
Sbjct: 1203 RSSVLRLFPADDANYVSEVLDIPDSLDHEIQERPFGLAGKRKK 1245


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +2

Query: 380 DNLKPLTVNQIKKVRVLIDNAISKNDEG--LLAAEKARSAALRE 505
           +  +P+T N +KK +  ++ A  K  +     AA  AR+AA +E
Sbjct: 62  EEFEPITTNALKKAKKGVEQAAKKKAKAAEAEAAAAARAAAAKE 105


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
 Frame = +2

Query: 191 LVDAVVEQDTLWRKLRHEADNFNKLKNVCSKEI------GLKMKNKEPSGSEDEPVPSEI 352
           L+D++  ++ ++     EA  F +LK++ + EI      GL+   K+ SG     V S+ 
Sbjct: 206 LLDSLDLRNCIYVVFEDEA-LFRRLKDIGNPEIRMMLDSGLRDWRKQRSGRSSSHVASKG 264

Query: 353 ANNLVNLTGDNLKPL 397
            N +VN+   ++K L
Sbjct: 265 INKVVNINPGDVKSL 279


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/47 (23%), Positives = 22/47 (46%)
 Frame = -2

Query: 363 RLLAISEGTGSSSEPLGSLFFIFKPISLLHTFFSLLKLSASWRNFLH 223
           + L +S+G+      + S +F+   I      +   + S +W +FLH
Sbjct: 376 KALLLSDGSRIMDADVASRYFLLADIQWQRVCYKSFRESRTWLHFLH 422


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = -2

Query: 156 RILSGLPSLSARNKSKS 106
           R L GLPSLS RN  KS
Sbjct: 130 RSLHGLPSLSRRNSKKS 146


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = +3

Query: 168 RRDLKMLPLWMQSSSKTPCGGNCATKLTISIN*RMYVAKKLV*K*RTRNPVALKTNPSPR 347
           R D   +P W Q ++K P   +   +L +         +    K  T+NP    +N S R
Sbjct: 59  RNDAPDVPQWKQVNAKNPVARDIFARLDLENMFEESSKQSPPSKSPTKNPSKKSSNNSSR 118

Query: 348 RS 353
           RS
Sbjct: 119 RS 120


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 25/111 (22%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
 Frame = +2

Query: 146 DKIRENQKKRFKDVALVDAVVEQDTL----WRKLRHEADNFNKLKNVCSKEIGLKMKNKE 313
           D   E  +K   D ++  + V+Q+      W+K   E  N  K + + SK   L+ KN+ 
Sbjct: 29  DISEEKPQKELSDASVKSSYVDQEQQAYENWKKQEQEEINRKKEEELKSKFEKLRQKNER 88

Query: 314 PSGSEDEPVPSEIANNLVNLTGDNLKPLTVNQIKKVRVLIDNAISKNDEGL 466
              ++ + +   +A     +  ++    T   I K+R   +++++KN  GL
Sbjct: 89  RRRTQGKTLAETLAEEDDQIDAND----TRAWILKMR---NSSLNKNGNGL 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,674,115
Number of Sequences: 5004
Number of extensions: 52473
Number of successful extensions: 196
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)