Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_H06
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0344 + 21172101-21172233,21172332-21172402,21172492-211726... 101 5e-22
03_02_0031 + 5134889-5135021,5135109-5135179,5135267-5135428,513... 100 9e-22
04_04_0279 - 24109592-24111346,24111457-24111551,24113210-24113348 37 0.013
01_06_0376 - 28863574-28863594,28863758-28864357,28865303-28865812 36 0.023
01_02_0002 + 10059518-10059949,10060134-10060202,10060344-100604... 32 0.37
02_05_0672 + 30775458-30775523,30775594-30775662,30775748-307757... 31 0.86
10_08_0845 - 20968051-20968188,20968769-20968843,20969399-209694... 30 2.0
04_04_0919 - 29422003-29422267,29422411-29422660,29423163-294234... 29 2.6
07_01_0039 - 306384-306551,306645-306749,306845-306949,307030-30... 29 3.5
02_05_0154 - 26330109-26330189,26330274-26330411,26330518-263306... 29 3.5
12_02_0208 + 15549411-15549740 28 6.0
11_08_0039 - 27884947-27885077,27885211-27886317,27886437-278866... 28 6.0
09_04_0539 - 18416184-18416830,18417983-18419057 28 8.0
08_02_1553 + 27835320-27835364,27836853-27836966,27837062-278374... 28 8.0
>01_05_0344 +
21172101-21172233,21172332-21172402,21172492-21172653,
21172995-21173100,21174242-21174439,21174565-21174631,
21174868-21175051,21175145-21175324,21175408-21175587,
21176472-21176627,21177487-21178067,21178535-21178640,
21179152-21179331,21179620-21179892
Length = 858
Score = 101 bits (242), Expect = 5e-22
Identities = 73/197 (37%), Positives = 105/197 (53%), Gaps = 1/197 (0%)
Frame = +2
Query: 101 VLDLDLFRADKDGNPDKIRENQKKRFKDVALVDAVVEQDTLWRKLRHEADNFNKLKNVCS 280
+LD++LFR +K G+P+ IR +Q+ R V LVD V+ D WR+ + E D + N S
Sbjct: 1 MLDINLFRTEKGGDPELIRRSQRNRSASVELVDEVIALDDQWRQRQFELDKIRQELNKTS 60
Query: 281 KEIGLKMKNKEPSGSEDEPVPSEIANNLVNLTGDNLKPLTVNQIKKVRVLIDNAISKNDE 460
KEIG K+K K+ E A+ L+ T +IKK ++ +
Sbjct: 61 KEIG-KLKAKK-----------EDASALIQST---------EEIKK-------RLAAKET 92
Query: 461 GLLAAEKARSAALREVGNHLHESVPVDDDEDHNLVERTDGDCGFRKKY-SHVDLICMIDG 637
+ A+ A L +GN +HESVPV DDE +NL+ RT G+ +HVDL M+D
Sbjct: 93 EVQEAKGTLDAKLVTIGNIVHESVPVSDDEANNLIVRTWGERRLEGNLKNHVDLCKMLDI 152
Query: 638 MDGERGSAVXGGRGYYL 688
+ E+G+ V GGRGYYL
Sbjct: 153 VALEKGADVAGGRGYYL 169
>03_02_0031 +
5134889-5135021,5135109-5135179,5135267-5135428,
5135786-5135891,5136385-5136429,5136850-5136946,
5137027-5137210,5137304-5137483,5137567-5137770
Length = 393
Score = 100 bits (240), Expect = 9e-22
Identities = 73/197 (37%), Positives = 105/197 (53%), Gaps = 1/197 (0%)
Frame = +2
Query: 101 VLDLDLFRADKDGNPDKIRENQKKRFKDVALVDAVVEQDTLWRKLRHEADNFNKLKNVCS 280
+LD++LFR +K G+P+ IR++Q+ R V LVD V+ D WR+ + E D + N S
Sbjct: 1 MLDINLFRTEKGGDPELIRKSQRNRSASVELVDEVIALDDQWRQRQFELDKIRQELNKTS 60
Query: 281 KEIGLKMKNKEPSGSEDEPVPSEIANNLVNLTGDNLKPLTVNQIKKVRVLIDNAISKNDE 460
KEIG K+K K+ E A+ L+ T +IKK ++ +
Sbjct: 61 KEIG-KLKAKK-----------EDASALIQST---------EEIKK-------RLAAKET 92
Query: 461 GLLAAEKARSAALREVGNHLHESVPVDDDEDHNLVERTDGDCGFRKKY-SHVDLICMIDG 637
+ A+ A L +GN +HESVPV DDE +NL+ RT G+ +HVDL M+D
Sbjct: 93 EVQEAKGTLDAKLVTIGNIVHESVPVSDDEANNLIVRTWGEKRMEGNLKNHVDLCKMLDI 152
Query: 638 MDGERGSAVXGGRGYYL 688
+ E+G V GGRGYYL
Sbjct: 153 VALEKGVDVAGGRGYYL 169
>04_04_0279 - 24109592-24111346,24111457-24111551,24113210-24113348
Length = 662
Score = 37.1 bits (82), Expect = 0.013
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Frame = +2
Query: 278 SKEIGLKMKNKEPSGSEDEPVPSEIANNLVNLTGDNLKPLTVNQIKKVRV-LIDNAISKN 454
SK G KN++ + + + VPS+++N LVN G+N P T++ K++ V +I+ S
Sbjct: 44 SKREGAGGKNEQYNLEDVDSVPSKMSNKLVN--GNNKVPATLDDYKRLLVPVIEEYFSTG 101
Query: 455 DEGLLAAE 478
D L A+E
Sbjct: 102 DVELAASE 109
>01_06_0376 - 28863574-28863594,28863758-28864357,28865303-28865812
Length = 376
Score = 36.3 bits (80), Expect = 0.023
Identities = 24/75 (32%), Positives = 35/75 (46%)
Frame = +2
Query: 302 KNKEPSGSEDEPVPSEIANNLVNLTGDNLKPLTVNQIKKVRVLIDNAISKNDEGLLAAEK 481
KN EP P + NNL + D+L +N + V++L+D A + D+ K
Sbjct: 185 KNTEPRQKRKNPRTAMEVNNLADELLDSLGVYLINNVDDVKILLDAARADLDDNAAHLAK 244
Query: 482 ARSAALREVGNHLHE 526
AR A LR V + E
Sbjct: 245 AR-ARLRNVRRLVRE 258
>01_02_0002 +
10059518-10059949,10060134-10060202,10060344-10060426,
10061842-10061894,10062056-10062177,10062354-10062387,
10062472-10062632,10062879-10062956,10063038-10063178
Length = 390
Score = 32.3 bits (70), Expect = 0.37
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 485 RSAALREVGNHLHESVPVDDDEDHNLVERTDGDCGF 592
+SAA + V LH++ DDD+D +L+ DCGF
Sbjct: 244 QSAAEQYVSEFLHKA---DDDDDESLIPNAKNDCGF 276
>02_05_0672 +
30775458-30775523,30775594-30775662,30775748-30775797,
30775869-30775929,30776016-30776381,30776542-30776754,
30776826-30777056,30777502-30777615,30777703-30778495,
30778535-30778905,30779007-30779378,30779448-30780438,
30781068-30781141,30781953-30782030,30782448-30782525
Length = 1308
Score = 31.1 bits (67), Expect = 0.86
Identities = 22/92 (23%), Positives = 41/92 (44%)
Frame = +2
Query: 92 VNMVLDLDLFRADKDGNPDKIRENQKKRFKDVALVDAVVEQDTLWRKLRHEADNFNKLKN 271
+N+ +L L + D D + E ++ + D +VD+ +D RK + DN
Sbjct: 101 LNVPEELSLLKKDGDQKASENSEAAEEDYLD-KIVDSAKNEDPQ-RKCNNHIDNVAMKPV 158
Query: 272 VCSKEIGLKMKNKEPSGSEDEPVPSEIANNLV 367
C I + + ++EP + VP+ AN +
Sbjct: 159 ECKLVIDVGLSDQEPKTEGSDGVPNISANQAI 190
>10_08_0845 -
20968051-20968188,20968769-20968843,20969399-20969425,
20969512-20969649,20969765-20969880,20970000-20970081,
20970105-20970226,20970314-20970368
Length = 250
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +2
Query: 248 DNFNKLKNVCSKEIGLKMKNKEPSGSEDEPVPSEIANNLVNLTGDNLKPLTVNQIKKVRV 427
+ FNK + +E+ LK+ PSGS D+ + + + L D+L L I+K++
Sbjct: 124 NTFNKEVDKVIEEMKLKVVYTVPSGSSDDSGITSLGSRSFKLGSDDLTMLKNASIEKIQT 183
Query: 428 L 430
+
Sbjct: 184 I 184
>04_04_0919 -
29422003-29422267,29422411-29422660,29423163-29423481,
29423625-29424794,29424879-29425388,29425449-29425607
Length = 890
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Frame = +2
Query: 248 DNFNKL--KNVCSKE---IGLKMKNKEPSGSEDEPVPSEIANNL 364
+NF KL KN + + +G+ MK K+P GS+ V S++ NL
Sbjct: 471 ENFRKLLSKNSAAGDEVLVGIFMKEKKPDGSDGGVVHSDLVRNL 514
>07_01_0039 -
306384-306551,306645-306749,306845-306949,307030-307111,
307457-307656,307754-307915,308043-308152,308255-308594,
308675-308749,308823-309032,309140-309343,309443-309562,
309643-309752,309832-309976,310716-310943
Length = 787
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +2
Query: 419 VRVLIDNAISKNDEGLLAAEKARSAALREVGNHLHESVPVDDDEDHNLVE 568
V++ +D A S +E L K ++ L+EV N E V DD DH L E
Sbjct: 261 VKMQLDLAKSSQNEAL----KQKTDLLKEVDNLRGELQQVRDDRDHKLAE 306
>02_05_0154 -
26330109-26330189,26330274-26330411,26330518-26330633,
26330782-26330863,26332706-26332770,26333016-26333112,
26334066-26334136,26334242-26334304,26334379-26334431,
26335143-26335192,26336295-26336340,26337014-26337019,
26337381-26337511,26337594-26337680,26338472-26338849
Length = 487
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +2
Query: 248 DNFNKLKNVCSKEIGLKMKNKEPSGSEDEPVPSEIANNLVNLTGDNLKPLTVNQIKKVRV 427
D FNK + +EI LK+ PSGS D+ + + + D+ L I++V
Sbjct: 414 DTFNKEVDKVIEEIKLKVVYTVPSGSSDDSGITSLGSRSFKSLSDDFTMLKNASIEEVMQ 473
Query: 428 LI 433
LI
Sbjct: 474 LI 475
>12_02_0208 + 15549411-15549740
Length = 109
Score = 28.3 bits (60), Expect = 6.0
Identities = 8/29 (27%), Positives = 18/29 (62%)
Frame = -1
Query: 571 PFYQVMVFIIINWYRLMQMISNFPECSGT 485
P +M I++ W ++ ++++NFP G+
Sbjct: 81 PIVNIMTIILLFWIKICRIMTNFPTVDGS 109
>11_08_0039 -
27884947-27885077,27885211-27886317,27886437-27886681,
27886810-27886961,27887077-27887193
Length = 583
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 320 GSEDEPVPSEIANNLVNLTGDNLKPLTVNQIKKVRVL 430
G ++ P+ A VNLTGDN +P KV+VL
Sbjct: 430 GVYEDDFPNNPAPVFVNLTGDNDRPGVTKHGAKVKVL 466
>09_04_0539 - 18416184-18416830,18417983-18419057
Length = 573
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +2
Query: 470 AAEKARSAALREVGNHLHESVPVDDDEDHNLVERTDGD 583
AA AR ++ N +H+ + DDD+D + E++DG+
Sbjct: 246 AAAHARQSSAGISSNGVHKVLYDDDDDDDDDAEQSDGE 283
>08_02_1553 +
27835320-27835364,27836853-27836966,27837062-27837457,
27837751-27837822,27837957-27838082,27838164-27838244,
27838364-27838558,27839018-27840013
Length = 674
Score = 27.9 bits (59), Expect = 8.0
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = -1
Query: 211 LDDCIHKGNIFKSLLLIFSNFIWITVFIG 125
L++C+ + N F L L+ ++ +W+ + IG
Sbjct: 187 LNNCVGRKNYFTFLALMITSLLWLAIEIG 215
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,454,219
Number of Sequences: 37544
Number of extensions: 341887
Number of successful extensions: 1161
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -