Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_H06
(688 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15871| Best HMM Match : No HMM Matches (HMM E-Value=.) 140 1e-33
SB_31390| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.0011) 100 1e-21
SB_34088| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_50259| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.38
SB_4908| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.66
SB_52646| Best HMM Match : Transposase_21 (HMM E-Value=2.9) 31 1.2
SB_4904| Best HMM Match : Transposase_21 (HMM E-Value=3.6) 31 1.2
SB_37927| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_54784| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_7778| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13) 29 3.5
SB_19825| Best HMM Match : TPR_2 (HMM E-Value=4.8e-30) 29 3.5
SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_34005| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_27800| Best HMM Match : CAP_GLY (HMM E-Value=2.5e-39) 28 6.2
SB_17140| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45) 28 8.1
SB_32293| Best HMM Match : BRCA2 (HMM E-Value=0) 28 8.1
SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06) 28 8.1
SB_10831| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_15871| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 425
Score = 140 bits (339), Expect = 1e-33
Identities = 69/134 (51%), Positives = 92/134 (68%)
Frame = +2
Query: 287 IGLKMKNKEPSGSEDEPVPSEIANNLVNLTGDNLKPLTVNQIKKVRVLIDNAISKNDEGL 466
+ LK KEP G +DE +P E+ + L LT + L+ LTV QIK VR L+D+ ++K +E +
Sbjct: 78 VTLKNMKKEPVG-DDETLPKEVLDGLEELTAEMLQQLTVTQIKIVRTLVDDGMAKCNEEV 136
Query: 467 LAAEKARSAALREVGNHLHESVPVDDDEDHNLVERTDGDCGFRKKYSHVDLICMIDGMDG 646
EK R+ L EVGN LH+SV + +DED N V+R GDC RKKYSHVDL+ M+DG+D
Sbjct: 137 ARLEKLRNEKLFEVGNILHDSVRISNDEDENPVDRIVGDCSVRKKYSHVDLVHMVDGVDI 196
Query: 647 ERGSAVXGGRGYYL 688
+RGS V G RGY+L
Sbjct: 197 DRGSVVAGSRGYFL 210
>SB_31390| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.0011)
Length = 103
Score = 100 bits (240), Expect = 1e-21
Identities = 49/69 (71%), Positives = 55/69 (79%)
Frame = +2
Query: 98 MVLDLDLFRADKDGNPDKIRENQKKRFKDVALVDAVVEQDTLWRKLRHEADNFNKLKNVC 277
MVLDLDL+RADK GNPDKIRENQ KR+ DV LVD VVE DT WRK N+NKL+N+C
Sbjct: 40 MVLDLDLYRADKGGNPDKIRENQSKRYSDVTLVDKVVEADTQWRKY-----NWNKLRNLC 94
Query: 278 SKEIGLKMK 304
SK+IG KMK
Sbjct: 95 SKQIGDKMK 103
>SB_34088| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 33.1 bits (72), Expect = 0.22
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Frame = +2
Query: 278 SKEIGLKMKNKEPSGSEDEPVPSEIANNLVNLTGD--NLKPLTVNQIKKVRVLIDNAISK 451
SK + K+ ++EP+ S V EI N + + D N + + + V + AIS
Sbjct: 121 SKNMDDKLSSREPALSST--VKPEIGNGIHHKGKDILNYQDTVKSDLVAVTRKTEGAISS 178
Query: 452 NDEGLLAAEKARSAALREVGNHLHESVPVDDDEDHNLVERTDGDCG 589
N L EKA + ++ + ESVP+ L +++ + G
Sbjct: 179 NTRPLRRPEKATTKSMNAIKFEDKESVPISTKSKIRLTQKSKKESG 224
>SB_50259| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 713
Score = 32.3 bits (70), Expect = 0.38
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = +2
Query: 332 EPVPSEIANNLVNLTGDNLKPL-----TVNQIKKVRVLIDNAISKNDEGLLAAEKARSAA 496
E VP NN+ +LTG +L L TV+Q+ ++ + K+ A+ +
Sbjct: 608 ESVPIPPTNNIASLTGAHLNQLIDITATVSQLSTIKTMDTRLGEKDKVECYLADPTSAIK 667
Query: 497 LREVGNHLHE 526
L+ G+H HE
Sbjct: 668 LKAWGDHAHE 677
>SB_4908| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1014
Score = 31.5 bits (68), Expect = 0.66
Identities = 38/152 (25%), Positives = 65/152 (42%), Gaps = 3/152 (1%)
Frame = +2
Query: 143 PDKIRENQKKRFKDVALVDAVVEQDTLWRKLRHEADNFNKLKNVCSKEIGL-KMKNKEPS 319
P K ++ Q +++ VV + + ++ + N +KN EI + K K+
Sbjct: 668 PQKAKDEQGVKYESKKTYKVVVSK----KPVKQDKPIANNVKNKGEPEIKVVPEKAKDEP 723
Query: 320 GSEDEPVPSEIANNLVNLTGDNLKPLTVNQIKK--VRVLIDNAISKNDEGLLAAEKARSA 493
G + E A L ++ K T +K L + IS+ +E ++ A +++
Sbjct: 724 GVKYENKKGRTAGRL-----EHAKVHTSENKQKDLSSPLARDRISEMEEMIMGAA-VKAS 777
Query: 494 ALREVGNHLHESVPVDDDEDHNLVERTDGDCG 589
LRE G E VP ++EDH VE D G
Sbjct: 778 RLREEGGAAREEVPESEEEDH--VEPAPSDLG 807
>SB_52646| Best HMM Match : Transposase_21 (HMM E-Value=2.9)
Length = 257
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -3
Query: 251 CQLRGAISSTRCLARRLHPQGQHL*ISSSDFLEFYLDYRL-YRHE 120
C++ ++ +C RR GQHL ++ S+ +Y D R+ YRH+
Sbjct: 180 CEVGKLLNQGKCACRRCKLVGQHLPMNESNNHMYYGDNRIHYRHK 224
>SB_4904| Best HMM Match : Transposase_21 (HMM E-Value=3.6)
Length = 223
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -3
Query: 251 CQLRGAISSTRCLARRLHPQGQHL*ISSSDFLEFYLDYRL-YRHE 120
C++ ++ +C RR GQHL ++ S+ +Y D R+ YRH+
Sbjct: 146 CEVGKLLNQGKCACRRCKLVGQHLPMNESNNHMYYGDNRIHYRHK 190
>SB_37927| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1032
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 368 NLTGDNLKPLTVNQIKKVRVLIDNAISKNDEGLLAAEKARSAALREVGNHLH 523
N T D P T+N I +L A++K+DEG + A E +L+
Sbjct: 551 NDTADQTVPSTLNYIINGGILTIKAVTKSDEGTFVCKGTNPAGAAEASANLY 602
>SB_54784| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 553
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +2
Query: 419 VRVLIDNAISKNDEGLLAAEKARSAALR--EVGNHLHESVPVDDDEDHNLVERTDGD 583
+R +ID + + + LL + +R ++ N E+ DDD+D + VE DGD
Sbjct: 468 LRCIIDICMKQPEGKLLILKDPSKGVIRIYDIPNSTFETDEEDDDDDEDDVENDDGD 524
>SB_7778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 461
Score = 29.9 bits (64), Expect = 2.0
Identities = 27/93 (29%), Positives = 37/93 (39%)
Frame = +2
Query: 281 KEIGLKMKNKEPSGSEDEPVPSEIANNLVNLTGDNLKPLTVNQIKKVRVLIDNAISKNDE 460
K I + K K P G++ V S L G N ++VN+ V V S N E
Sbjct: 287 KSIPSEQKQKAPKGTDVGAVESLPYIALCTFEGQNAGEISVNEGDLVTVQRRCDTSGNTE 346
Query: 461 GLLAAEKARSAALREVGNHLHESVPVDDDEDHN 559
L + R + G+ L P DDED +
Sbjct: 347 WWLVSYHGRKGYI--PGDFLDPFDPTKDDEDED 377
>SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 602
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Frame = +2
Query: 383 NLKPLTVNQIKKVRVLIDNAISKNDEGL-LAAE-------KARSAALREVGNHLHESVPV 538
N+KP + ++I + K D+ L +AE K++ AA+ + G + +
Sbjct: 474 NVKPCNKRSLPSYTIVIVIFVVKGDQKLDYSAEMYHYQQTKSQLAAMEKAGTVTPKGGAL 533
Query: 539 DDDEDHNLVERTDGD 583
DDD+D N E +GD
Sbjct: 534 DDDDDENSDEGDEGD 548
>SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)
Length = 1287
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 266 KNVCSKEIGLKMKNKEPSGSEDEPVPSEIANNLVNLTGDN 385
K C+++IG ++ E GS+D+ P NLV+ T N
Sbjct: 84 KECCAEDIGFEVVPGEELGSDDQVFPRHDNENLVSKTITN 123
>SB_19825| Best HMM Match : TPR_2 (HMM E-Value=4.8e-30)
Length = 592
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 470 AAEKARSAALREVGNHLHESVPVDDDEDHNLVERTDGD 583
AAE A S A+R+V + + + V D++ D N T D
Sbjct: 480 AAENAVSKAIRDVNDRIAQGVKTDENSDENGEAETKPD 517
>SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1560
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/82 (25%), Positives = 34/82 (41%)
Frame = +2
Query: 227 RKLRHEADNFNKLKNVCSKEIGLKMKNKEPSGSEDEPVPSEIANNLVNLTGDNLKPLTVN 406
+KL+ EAD+ L + + S + VP+E+ NN T +++ L
Sbjct: 837 KKLKSEADSSEDLTKPKTSPASSRATKAAEEDSRPKTVPAELKNNGPKRTSSDIEKL--K 894
Query: 407 QIKKVRVLIDNAISKNDEGLLA 472
I N + + EGLLA
Sbjct: 895 SAGHFLAKIKNVLREGLEGLLA 916
>SB_34005| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 28.3 bits (60), Expect = 6.2
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Frame = +2
Query: 158 ENQKKRFKDVALVDAVVEQDTLWRKLRHEADNFNKLKNVCSKEIGLKMKNKEPSGSEDEP 337
E ++ ++ +D EQD K E + FN + N E G+ E +G+
Sbjct: 347 EQEESSYEHEIPLDPWWEQDC---KEMEEDEKFNNILNGVMDEYGIP----ETNGTRSFG 399
Query: 338 VPSEIANNLVNLTG-DNLKPLTVNQIKKVRVLIDNA 442
+ + N++++ G DNLKP+ + KK+ I ++
Sbjct: 400 FQARL--NMMSMYGKDNLKPMLIEANKKISKFIQDS 433
>SB_27800| Best HMM Match : CAP_GLY (HMM E-Value=2.5e-39)
Length = 246
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = +2
Query: 338 VPSEIANNLVNLTGDNL--KPLTVNQIKKVRVLIDNAISKNDEGLLAAEKARSAALREVG 511
V +I +N+ +L + K +T+ +K LI S N + L + + + +
Sbjct: 10 VTVQITSNITSLVSEKRYGKDITIAALKGKLELITGCSSANVDLQLFDKDGKLVGVMDND 69
Query: 512 NHLHESVPVDDDEDHNLVERTDG 580
+ S PVDD+ ++++RT G
Sbjct: 70 EAMLGSYPVDDNMRIHVIDRTPG 92
>SB_17140| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1236
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/79 (25%), Positives = 34/79 (43%)
Frame = +2
Query: 113 DLFRADKDGNPDKIRENQKKRFKDVALVDAVVEQDTLWRKLRHEADNFNKLKNVCSKEIG 292
DL +D N ++ R + F + + V E ++L K+ N N +K +
Sbjct: 908 DLLESDTATN-NQARAELRSTFPQRSTTNVVAEDNSLAVKISECGSN--SATNTRTKSVS 964
Query: 293 LKMKNKEPSGSEDEPVPSE 349
+ P+G +E VPSE
Sbjct: 965 RAPNGQRPAGHPNEVVPSE 983
>SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)
Length = 649
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 113 DLFRADKDGNPDKIRENQKKRFKDVALVDAVVEQDTLWR 229
DLF D + PD++ + F DV +A + + LWR
Sbjct: 38 DLFEGDIELTPDEVSLLSSQTFDDVTKRNAHLHRQGLWR 76
>SB_32293| Best HMM Match : BRCA2 (HMM E-Value=0)
Length = 1649
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 491 AALREVGNHLHESVPVDDDEDHNLVERTD 577
A L ++G L+ +PVDD D +LV D
Sbjct: 783 AELDQLGQDLNNGLPVDDSLDDSLVSHAD 811
>SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)
Length = 739
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +2
Query: 401 VNQIKKVRVLIDNAISKNDEGLLAAEKARSAALR--EVGNHLHESVPVDDDED 553
+ + K++ L+ +S DE ++ K +SA R E NH+++S D+D D
Sbjct: 200 LGDVSKLKNLV---LSGEDETVVQHRKGQSAQTRKRETQNHVYDSGDADEDSD 249
>SB_10831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 687
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -2
Query: 402 TVRGFK-LSPVRFTRLLAISEGTGSSSEPLGSLF 304
TV G K L+PV R L +S+GTG ++ + +LF
Sbjct: 370 TVIGLKHLNPVLIQRRLWVSKGTGKNARGIQNLF 403
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,809,207
Number of Sequences: 59808
Number of extensions: 383653
Number of successful extensions: 1193
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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