Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_H06
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.2  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   4.8  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   8.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = -3

Query: 563 PSYGLHHHQLVQTHADDFQLP*VQRNALSQQP 468
           P   LHHHQ     A     P  Q+    QQP
Sbjct: 810 PHQQLHHHQSTHPQAQAQAQPQQQQQQQQQQP 841


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 233 LRHEADNFNKLKNVCSKEIGL 295
           +RH++D ++KLK    K  G+
Sbjct: 20  IRHQSDRYSKLKRNWRKPKGI 40


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +3

Query: 438 MQYQRMMKGYWLLRKRVPLHSGKLEIICMSLYQLMMMKTITW 563
           M +QR+     L    + L +    +  +S YQL+   T+ W
Sbjct: 1   MSWQRVFLAVGLFGVLLLLTNADNSVHILSKYQLITSTTLNW 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,888
Number of Sequences: 438
Number of extensions: 3536
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)