Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_H06
(688 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g27470.1 68418.m03281 seryl-tRNA synthetase / serine--tRNA li... 97 1e-20
At3g43300.1 68416.m04570 guanine nucleotide exchange family prot... 34 0.077
At2g07770.1 68415.m01005 hypothetical protein low similarity to ... 32 0.41
At1g19990.1 68414.m02504 expressed protein ; expression supporte... 31 0.72
At4g09960.2 68417.m01630 MADS-box protein (AGL11) 30 1.3
At4g09960.1 68417.m01629 MADS-box protein (AGL11) 30 1.3
At3g51750.1 68416.m05674 expressed protein 29 2.2
At2g45900.1 68415.m05708 expressed protein 29 2.2
At1g23170.1 68414.m02895 expressed protein Location of ESTs gb|A... 29 2.2
At5g47940.1 68418.m05922 expressed protein 29 2.9
At3g51910.1 68416.m05694 heat shock transcription factor family ... 29 2.9
At3g51750.2 68416.m05675 expressed protein 29 2.9
At1g62580.1 68414.m07060 flavin-containing monooxygenase family ... 29 2.9
At5g27690.1 68418.m03321 heavy-metal-associated domain-containin... 28 5.0
At5g25070.1 68418.m02971 expressed protein 28 5.0
At3g47570.1 68416.m05179 leucine-rich repeat transmembrane prote... 28 5.0
At5g16630.1 68418.m01947 DNA repair protein Rad4 family low simi... 28 6.7
At3g62570.1 68416.m07029 DNAJ heat shock N-terminal domain-conta... 28 6.7
At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063... 28 6.7
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 27 8.8
At4g37050.1 68417.m05247 patatin, putative similar to patatin-li... 27 8.8
>At5g27470.1 68418.m03281 seryl-tRNA synthetase / serine--tRNA
ligase identical to SP|Q39230 Seryl-tRNA synthetase (EC
6.1.1.11) (Serine--tRNA ligase) (SerRS) {Arabidopsis
thaliana}
Length = 451
Score = 97.1 bits (231), Expect = 1e-20
Identities = 67/201 (33%), Positives = 109/201 (54%), Gaps = 5/201 (2%)
Frame = +2
Query: 101 VLDLDLFRADKDGNPDKIRENQKKRFKDVALVDAVVEQDTLWRKLRHEADNFNKLKNVCS 280
+LD++LFR +K NP+ IRE+Q++RF V +VD +++ D WR+ + E D+F K N +
Sbjct: 1 MLDINLFREEKGNNPEIIRESQRRRFASVEIVDEIIKLDKEWRQRQFEVDSFRKEFNKLN 60
Query: 281 KEIG-LKMKNKEPSGSEDEPVPSEIANNLVNLTGDNLKPLTVNQIKKVRVLIDNAISKND 457
K++ LK+K ++ A+ ++ T N + T + +VR
Sbjct: 61 KQVAQLKIKKED-------------ASEIIQQTEKNKQDSTAKE-AEVR----------- 95
Query: 458 EGLLAAEKARSAALREVGNHLHESVPVDDDEDHNLVERTDGDCGFR----KKYSHVDLIC 625
A A A L +VGN +H+SVPVD DE +NLV + G+ F K +HVDL+
Sbjct: 96 ----EAYAALKAKLEQVGNLVHDSVPVDKDEANNLVIKLWGEKRFSTPGLKLKNHVDLVE 151
Query: 626 MIDGMDGERGSAVXGGRGYYL 688
++ D +RG+ + G RG++L
Sbjct: 152 LLGIADTKRGAEIAGARGFFL 172
>At3g43300.1 68416.m04570 guanine nucleotide exchange family protein
similar to SP|Q9Y6D5 Brefeldin A-inhibited guanine
nucleotide-exchange protein 2 {Homo sapiens}; contains
Pfam profile PF01369: Sec7 domain
Length = 1756
Score = 34.3 bits (75), Expect = 0.077
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 4/139 (2%)
Frame = +2
Query: 134 DGNPDKIRENQKKRFKDVALVDAVVEQDTLWRKLRHEADNFNKLKNVCSKEIGLKMKNKE 313
D NP + + + + V++ W K+R EA+N + N S G ++ K
Sbjct: 523 DPNPAMASQTASVKGSSLQCLVNVLKSLVDWEKIRREAENSTRNANEDSASTGEPIETK- 581
Query: 314 PSGSEDEPVPSEIANNLVNLTGDNLKPLTVNQIKKVRVLIDNAISKNDEGLLAAEKARSA 493
ED P E A + + N +K V LI N + + + +A ++
Sbjct: 582 --SREDVPSNFEKAKAHKSTMEAAISEFNRNSVKGVEYLIANKLVERNPASVAQFLRSTS 639
Query: 494 ALREV--GNHL--HESVPV 538
+L +V G++L HE P+
Sbjct: 640 SLSKVMIGDYLGQHEEFPL 658
>At2g07770.1 68415.m01005 hypothetical protein low similarity to KED
[Nicotiana tabacum] GI:8096269; contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 518
Score = 31.9 bits (69), Expect = 0.41
Identities = 38/138 (27%), Positives = 57/138 (41%), Gaps = 9/138 (6%)
Frame = +2
Query: 278 SKEIGLKMKNKEPSGSEDEPVPSEIANNLVNLTGDNLKPL--TVNQIKKVRVLIDN---- 439
SKEI K E + + E+A GD + + T QI K D+
Sbjct: 300 SKEIDDKENELEEGSDAETEIDKEVAQ------GDKEREVGETETQIDKEVAQGDSDKEV 353
Query: 440 AISKNDEGLLAAEKARSAALREVG---NHLHESVPVDDDEDHNLVERTDGDCGFRKKYSH 610
A S+ D+ + +EK + A E+G + + VP DD+ D V +DG+ K
Sbjct: 354 AESEKDKVVAESEKEKEVAESEIGVAESEKDKEVPQDDEMDGGKVAESDGEMDGEKDKE- 412
Query: 611 VDLICMIDGMDGERGSAV 664
+ D MDGE+ V
Sbjct: 413 ---VPQDDEMDGEKEKEV 427
>At1g19990.1 68414.m02504 expressed protein ; expression supported
by MPSS
Length = 251
Score = 31.1 bits (67), Expect = 0.72
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +2
Query: 248 DNFNK-LKNVCSKEIGLKMKNKEPSGSEDEPVPSEIANNLVNLTGDNLKPLTVNQIKKVR 424
D+ NK +K+ S +K KE +DE P N+ V ++ +N KP ++KK R
Sbjct: 51 DDDNKPIKSSVSGSRAKPVKKKEEIDKDDEKKPVSKRNSSVGVSKENKKPEKEEEVKKKR 110
>At4g09960.2 68417.m01630 MADS-box protein (AGL11)
Length = 216
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 350 IANNLVNLTGDNLKPLTVNQIKKVRVLIDNAISK 451
I N+ NL GD+L L+V ++K+V ++ AIS+
Sbjct: 104 IQNSNRNLMGDSLSSLSVKELKQVENRLEKAISR 137
>At4g09960.1 68417.m01629 MADS-box protein (AGL11)
Length = 230
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 350 IANNLVNLTGDNLKPLTVNQIKKVRVLIDNAISK 451
I N+ NL GD+L L+V ++K+V ++ AIS+
Sbjct: 104 IQNSNRNLMGDSLSSLSVKELKQVENRLEKAISR 137
>At3g51750.1 68416.m05674 expressed protein
Length = 110
Score = 29.5 bits (63), Expect = 2.2
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Frame = +2
Query: 266 KNVCSKEIGLKMKNKEPSGSEDEPVPSEIANNLVNLTGDNLKPLTVNQIK-KVRVLIDNA 442
K +C KE+ K K+K+ +++ I NNL++ N T ++ K I +
Sbjct: 10 KLMCPKEVVEKNKDKQEEEEDEKGAKGGILNNLIS----NFMDCTTTTVEGKSSENIQKS 65
Query: 443 ISKNDEGLLAAEKARSAALREVGNHLHESVPVDDDE 550
+ + DE E L ++ +HL E V DE
Sbjct: 66 LCE-DEDEKEQESPSVGILEKIISHLPEDVAPTTDE 100
>At2g45900.1 68415.m05708 expressed protein
Length = 720
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +2
Query: 407 QIKKVRVLIDNAISKNDEGLLAAE--KARSAALREVGNHLHESVPVDDDEDHNLVERTDG 580
+++ V+ LI+ I + A K RS ++ ++ + DDD+DH E++D
Sbjct: 76 EMQSVKKLIEAEIDEKTTQKCEARNRKRRSRTCSKISEDINVLIAGDDDDDH--AEKSDN 133
Query: 581 DCGFRKKYSHVDLI 622
+C ++ VD++
Sbjct: 134 ECPI-VSHNEVDMV 146
>At1g23170.1 68414.m02895 expressed protein Location of ESTs
gb|AA395014, gb|T23026, gb|N65311 and gb|N37226;
expression supported by MPSS
Length = 569
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +2
Query: 320 GSEDEPVPSEIANNLVNLTGDNLKPLTVNQIKKVRVLIDNAISKNDEGLLAA 475
G + + SEIA NL + +K V ++KK +V + A +K D LAA
Sbjct: 112 GYDFDDSDSEIAVGKENLKAEEVKKPKVKKVKKPKVTLAEAAAKIDVSNLAA 163
>At5g47940.1 68418.m05922 expressed protein
Length = 749
Score = 29.1 bits (62), Expect = 2.9
Identities = 22/85 (25%), Positives = 37/85 (43%)
Frame = +2
Query: 113 DLFRADKDGNPDKIRENQKKRFKDVALVDAVVEQDTLWRKLRHEADNFNKLKNVCSKEIG 292
D R+D D PD + + DV + ++ + + N+L N+ SK +
Sbjct: 379 DSLRSDTDKTPDTDESDGLTKNTDVVPDSSSIDNSEDCAVVLPK----NRLDNILSKSVE 434
Query: 293 LKMKNKEPSGSEDEPVPSEIANNLV 367
L+ +N SG+E EI+N V
Sbjct: 435 LESENSSISGNEMISAEPEISNEEV 459
>At3g51910.1 68416.m05694 heat shock transcription factor family
protein contains Pfam profile: PF00447 HSF-type
DNA-binding domain
Length = 272
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/69 (28%), Positives = 32/69 (46%)
Frame = +2
Query: 386 LKPLTVNQIKKVRVLIDNAISKNDEGLLAAEKARSAALREVGNHLHESVPVDDDEDHNLV 565
L L + KK++ L DN +K G + + AL G+ ++ ++EDH LV
Sbjct: 192 LHQLLKQRDKKIKELEDNESAKRKRGSSSMSELEVLALEMQGHGKQRNML--EEEDHQLV 249
Query: 566 ERTDGDCGF 592
+ D GF
Sbjct: 250 VERELDDGF 258
>At3g51750.2 68416.m05675 expressed protein
Length = 109
Score = 29.1 bits (62), Expect = 2.9
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Frame = +2
Query: 266 KNVCSKEIGLKMKNKEPSGSEDEPVPSEIANNLVNLTGDNLKPLTVNQIK-KVRVLIDNA 442
K +C KE+ K K+K+ +++ I NNL++ N T ++ K I +
Sbjct: 10 KLMCPKEVVEKNKDKQEEEEDEKGAKGGILNNLIS----NFMDCTTTTVEGKSSENIQKS 65
Query: 443 ISKNDEGLLAAEKARSAALREVGNHLHESVPVDDD 547
+ + DE E L ++ +HL + P D+
Sbjct: 66 LCE-DEDEKEQESPSVGILEKIISHLPDVAPTTDE 99
>At1g62580.1 68414.m07060 flavin-containing monooxygenase family
protein / FMO family protein low similarity to SP|P97501
Dimethylaniline monooxygenase [N-oxide forming] 3 (EC
1.14.13.8) (Hepatic flavin-containing monooxygenase 3)
(FMO 3) {Mus musculus}; contains Pfam profile PF00743
Flavin-binding monooxygenase-like domain
Length = 497
Score = 29.1 bits (62), Expect = 2.9
Identities = 23/104 (22%), Positives = 53/104 (50%), Gaps = 3/104 (2%)
Frame = +2
Query: 107 DLDLFRADKDG-NPDKIRENQKKRFKDVA--LVDAVVEQDTLWRKLRHEADNFNKLKNVC 277
+ ++ R ++ G NP K R + + F D++ + DAVV + + + RH NK+ +
Sbjct: 134 ETEVVRVEQAGENPKKWRV-KSRNFGDISDEIYDAVVVCNGHYTEPRHALIPGNKINHSF 192
Query: 278 SKEIGLKMKNKEPSGSEDEPVPSEIANNLVNLTGDNLKPLTVNQ 409
S +G+ + S + VP ++ + +V + G ++ + +++
Sbjct: 193 SIGLGIDTWPGKQIHSHNYRVPEQVKDQVVVVIGSSVSGVDISR 236
>At5g27690.1 68418.m03321 heavy-metal-associated domain-containing
protein very low similarity to copper homeostasis factor
from Arabidopsis thaliana [gi:3168840]; contains Pfam
heavy metal associated domain PF00403
Length = 352
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = +2
Query: 257 NKLKNVCSKEIGLKMKNKEPSGSEDEPVPSEIANNLVNL-TGDNLKPLTVNQIKKVRVLI 433
N + N C+ + K N+E SG ED+ + N ++ G +Q+K+V +
Sbjct: 100 NNINNDCNYQKKPKKDNEETSGDEDDDENNNNNNGGGDVGGGGGGGGGNFDQVKQVVTFV 159
Query: 434 DNAISKNDEGLLAAEKARSAALREVGN 514
+ + +G +K + + +GN
Sbjct: 160 NGQLQPQGDGAPKKKKKKKKKKKSLGN 186
>At5g25070.1 68418.m02971 expressed protein
Length = 736
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +2
Query: 446 SKNDEGLLAAEKARSAALREVGNHLHESVPVDDDEDHNLVERTD 577
+KN ++ K R+A LR +G HE+ +D+DED + +++D
Sbjct: 104 AKNYGRQVSRRKKRAAGLR-IGYGRHETNNLDEDEDDAVSQQSD 146
>At3g47570.1 68416.m05179 leucine-rich repeat transmembrane protein
kinase, putative protein kinase Xa21 - Oryza sativa,
PIR:A57676
Length = 1010
Score = 28.3 bits (60), Expect = 5.0
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Frame = +2
Query: 275 CSKEIGLKMKNKEPSGSEDEPVPSEIAN--NLV--NLTGDNLKPLTVNQIKKVRVLIDNA 442
CS+ + L++ + GS VPSE+ + NLV NL G+N++ + + +L A
Sbjct: 137 CSRLLNLRLDSNRLGGS----VPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLA 192
Query: 443 ISKND-EGLLAAEKAR 487
+S N+ EG + ++ A+
Sbjct: 193 LSHNNLEGEIPSDVAQ 208
>At5g16630.1 68418.m01947 DNA repair protein Rad4 family low
similarity to SP|Q01831 DNA-repair protein complementing
XP-C cells (Xeroderma pigmentosum group C complementing
protein) {Homo sapiens}; contains Pfam profile PF03835:
DNA repair protein Rad4
Length = 865
Score = 27.9 bits (59), Expect = 6.7
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Frame = +2
Query: 209 EQDTLWRKLRHEADNFNKLKNVCSKEIGLKMKNKEPSGSEDEPVPSEIANNLVNLTGDNL 388
E+ L L + N + + C E G+ +K+ D +IA L + T DN
Sbjct: 310 EKPQLGNPLGSDQVQDNAVNSSC--EAGMSIKSDGTRRKGDVEFERQIAMAL-SATADNQ 366
Query: 389 KPLTVNQIKKVRVL--IDNAISKNDEGLLAA 475
+ VN KKVR + I N+ S +D+ + A
Sbjct: 367 QSSQVNNTKKVREITKISNSSSVSDQVISTA 397
>At3g62570.1 68416.m07029 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profiles
PF00226: DnaJ domain, PF00515: TPR Domain
Length = 552
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -1
Query: 325 RATGFLVLHFQTNFFATYILQFIEIVSFVAQFPPQGVLLDDCIHKGNIFKS 173
R+ GF F FA I F +I+ + PQG L D +H+ +KS
Sbjct: 244 RSAGFAA--FDAGLFADSIRHFSKILDGRRRPAPQGFLADCYMHRAAAYKS 292
>At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063:
Domain of unknown function (DUF383) and PF04064: Domain
of unknown function (DUF384)
Length = 339
Score = 27.9 bits (59), Expect = 6.7
Identities = 20/71 (28%), Positives = 32/71 (45%)
Frame = +2
Query: 410 IKKVRVLIDNAISKNDEGLLAAEKARSAALREVGNHLHESVPVDDDEDHNLVERTDGDCG 589
+KK V I + ++ ++EGL + K L + L+ES V + LV + C
Sbjct: 19 VKKAAVEIVSGLTGSEEGLQSLSKYSEILLPSLSQLLNESKEVSEPAAQALVNLSQ-KCE 77
Query: 590 FRKKYSHVDLI 622
KK + LI
Sbjct: 78 LAKKMIQMGLI 88
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 389 KPLTVNQIKKVRVLIDNAISKNDEGLLAAEKARSAALREVGNHL 520
K L V+ KVR+L N + + +G+ SA+L G H+
Sbjct: 475 KVLVVSADSKVRILQGNNVVRKYKGVCKTRSLTSASLTSDGKHI 518
>At4g37050.1 68417.m05247 patatin, putative similar to patatin-like
latex allergen [Hevea brasiliensis][PMID:10589016];
contains patatin domain PF01734
Length = 339
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -2
Query: 384 LSPVRFTRLLAISEGTGS 331
+SP+ FTR L IS GTGS
Sbjct: 180 ISPLDFTRFLVISIGTGS 197
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,124,854
Number of Sequences: 28952
Number of extensions: 279956
Number of successful extensions: 960
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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