Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_H05
(760 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0848 - 25334701-25334949,25335076-25335184,25335667-253357... 36 0.035
04_04_1653 + 35070026-35070064,35070358-35070408,35070490-350705... 36 0.046
12_01_0088 - 698169-698614,699514-700819,703041-703148 31 1.3
09_06_0215 - 21621889-21621949,21622275-21622333,21622442-216225... 31 1.3
02_02_0139 + 7122880-7122979,7123328-7123560,7123961-7124032,712... 31 1.3
05_02_0108 + 6681656-6681944,6682041-6682183,6682548-6682610 30 1.7
11_01_0087 - 654461-654912,655878-657186,659080-659187 29 3.0
11_01_0058 + 438000-438230,438847-438902,440003-440117,440314-44... 29 4.0
08_02_0481 + 17636359-17636593,17638136-17638278,17638431-176385... 29 5.3
06_03_0398 - 20379748-20379820,20379930-20380024,20380127-203802... 29 5.3
08_01_0005 + 47929-48201,48663-48788,49009-49054,49188-49270,496... 28 7.0
04_01_0007 + 168423-168485,168590-168697,169662-169741,170497-17... 28 7.0
03_01_0617 + 4532651-4532893,4534713-4534939,4535077-4535150,453... 28 7.0
10_06_0164 + 11364436-11367280,11367357-11367715 28 9.3
>06_03_0848 -
25334701-25334949,25335076-25335184,25335667-25335701,
25335793-25335843,25335941-25336018,25336214-25336351,
25336664-25336729,25337387-25337572
Length = 303
Score = 35.9 bits (79), Expect = 0.035
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +2
Query: 629 GEWAIPGGMVDPGEKVSETAIREFKEE 709
G W P G+V+PGE ++ A+RE KEE
Sbjct: 145 GVWKFPTGVVEPGEDINLGAVREVKEE 171
>04_04_1653 +
35070026-35070064,35070358-35070408,35070490-35070582,
35070758-35070855,35072437-35072551,35072628-35072720
Length = 162
Score = 35.5 bits (78), Expect = 0.046
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +2
Query: 590 PILQFIAIKRGDTGEWAIPGGMVDPGEKVSETAIREFKEE 709
PIL F A + W +P G +D GE E A RE +EE
Sbjct: 11 PILIFTASRIDIANTWQMPQGGIDAGEDPREAAFRELREE 50
>12_01_0088 - 698169-698614,699514-700819,703041-703148
Length = 619
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = +2
Query: 200 SKCRVGFYPRSNLKRFPVPDDKVDWSTEYKQYNP 301
S C VG P S+ + FP P KVDWS +Y Y P
Sbjct: 448 SLCGVG--PTSS-EGFPGPHGKVDWSRDYCYYPP 478
>09_06_0215 -
21621889-21621949,21622275-21622333,21622442-21622582,
21622669-21622804,21623266-21623342,21623594-21623725,
21624915-21624938,21626147-21626365,21626401-21626718
Length = 388
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 629 GEWAIPGGMVDPGEKVSETAIREFKEEA 712
G W +P G ++ GE +E A RE EEA
Sbjct: 255 GLWTLPAGYLEVGESAAEGASRETLEEA 282
>02_02_0139 +
7122880-7122979,7123328-7123560,7123961-7124032,
7124257-7124334,7124529-7124579,7124654-7124703,
7124807-7124915,7125023-7125223
Length = 297
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 635 WAIPGGMVDPGEKVSETAIREFKEEALNS 721
W IP G +D E + AIRE +EE NS
Sbjct: 152 WKIPTGFIDKFEDLFSGAIREVREETGNS 180
>05_02_0108 + 6681656-6681944,6682041-6682183,6682548-6682610
Length = 164
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +2
Query: 626 TGEWAIPGGMVDPGE-KVSETAIREFKEE 709
+GE ++PGG V+ G+ + TA+RE KEE
Sbjct: 96 SGEVSLPGGKVEEGDADATATALREAKEE 124
>11_01_0087 - 654461-654912,655878-657186,659080-659187
Length = 622
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 200 SKCRVGFYPRSNLKRFPVPDDKVDWSTEYKQYNP 301
S C VG ++ + FP P KVDWS +Y Y P
Sbjct: 449 SLCGVG---STSSEGFPGPHGKVDWSRDYCYYPP 479
>11_01_0058 +
438000-438230,438847-438902,440003-440117,440314-440424,
442331-442518,442957-443013,443109-443268,443368-443436,
443580-443699
Length = 368
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 236 LKRFPVPDDKVDWSTEYKQYNPPNYTFPGLHGKPYADP 349
L+ F DD D YK + P+Y P HG+P A P
Sbjct: 5 LRCFKGDDDGGDHYPYYKPTSRPHYQPPHYHGQPAAPP 42
>08_02_0481 +
17636359-17636593,17638136-17638278,17638431-17638550,
17638916-17639116
Length = 232
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 626 TGEWAIPGGMVDPGE-KVSETAIREFKEE 709
+GE A+PGG + G+ + TA+RE KEE
Sbjct: 78 SGEVALPGGKAEEGDADDAATALREAKEE 106
>06_03_0398 -
20379748-20379820,20379930-20380024,20380127-20380222,
20380342-20380501,20380844-20381016,20381102-20381206,
20381460-20381565,20381741-20381947,20383478-20383563,
20383655-20383846
Length = 430
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 278 TEYKQYNPPNYTFPGLHGKPYADPEIGDPNFEPLW-NSIDGNISRV 412
++ +Q P Y+ P +HG +GDP + LW + G R+
Sbjct: 304 SQLQQIARPLYSNPPVHGALIVSTILGDPELKSLWLKEVKGMADRI 349
>08_01_0005 +
47929-48201,48663-48788,49009-49054,49188-49270,
49651-49728,49831-49884,50004-50138,50222-51691
Length = 754
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 395 GNISRVSYNGPYQIVNGFPLNPL 463
G++S +SY GP ++N P NPL
Sbjct: 346 GSLSTLSYTGPPPLMNIMPRNPL 368
>04_01_0007 +
168423-168485,168590-168697,169662-169741,170497-170548,
171112-171200,171756-171875,172204-172248,172352-172436
Length = 213
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 338 YADPEIGDPNFEPL-WNSIDGNISRVSYNGPYQIVNGFPLNPLGRTGICGRGVLG 499
Y P++ D + PL WN +D V +G Q + +PL RT GV G
Sbjct: 40 YMSPQLFDAHLTPLGWNQVDCLREHVKKSGLAQKIELVITSPLLRTMQTAVGVFG 94
>03_01_0617 +
4532651-4532893,4534713-4534939,4535077-4535150,
4535753-4535809,4535940-4536280,4536979-4537047,
4537152-4537219,4537404-4539569,4540101-4540178,
4540326-4540437,4540722-4540772,4540886-4540936
Length = 1178
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Frame = +2
Query: 380 WNSIDGNISRVSY-NGPY 430
WNS+DGN+ RVS+ PY
Sbjct: 751 WNSLDGNLGRVSHAEDPY 768
>10_06_0164 + 11364436-11367280,11367357-11367715
Length = 1067
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +2
Query: 392 DGNISRVSYNGPYQIVNGFPLNPLGRTGICG 484
DG RVSY +Q NGF +N L TG G
Sbjct: 742 DGMYPRVSYYELFQSTNGFNVNNLVGTGRYG 772
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,501,511
Number of Sequences: 37544
Number of extensions: 462840
Number of successful extensions: 1209
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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