Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_H04
(787 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr 2... 30 0.33
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 29 1.00
SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp... 26 5.3
SPAC23H4.11c |cnl2||centromere localized protein Cnl2|Schizosacc... 26 5.3
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 26 5.3
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 5.3
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom... 26 7.0
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 26 7.0
SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 9.3
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 25 9.3
>SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 30.3 bits (65), Expect = 0.33
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +2
Query: 137 EMLLHPELLSNEQLTHIIEQRHLRI--DGIEKM-LRDDLLDLFHQYCVPYGQ 283
E L P + S L IIE H++ D I+ + ++D+L+D FH CV Q
Sbjct: 71 EAALRPAVGSVHDLVRIIETDHVQAARDFIQDVGIQDELIDAFHADCVELEQ 122
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 28.7 bits (61), Expect = 1.00
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 446 KLENVTTKCSHMNSNNHKRKIINDPNS 526
K ++ C H NSN+H+ KI+ D S
Sbjct: 109 KADSTNGFCEHNNSNDHQLKILQDKGS 135
>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 355 SRWLRTDMTSSIQYFTSSRIPVFSLSV 275
+RW+ + +SS Y+ S IP+ SL V
Sbjct: 27 ARWITSSGSSSFDYYLSGGIPMKSLLV 53
>SPAC23H4.11c |cnl2||centromere localized protein
Cnl2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 26.2 bits (55), Expect = 5.3
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +2
Query: 137 EMLLHPELLSNEQLTHIIEQRHLRIDGIEKMLRDDLLDLFHQYCVPYGQRK 289
E +L+ LLS +L II R ++ D L++ ++YC Q++
Sbjct: 5 EQILNDYLLSQGRLQSIISLEQWRQLFPQRYREDPLIERLYEYCTQQRQKR 55
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 26.2 bits (55), Expect = 5.3
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Frame = +2
Query: 278 GQRKYRDSGRGKILNRTRHISP--EPSRSLNKIK--ETRHT 388
G +++ G GK+ R H+SP E ++SL + E++HT
Sbjct: 88 GSYGFKEFGLGKLFIRAMHLSPTSEDAKSLKNWRGSESKHT 128
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.2 bits (55), Expect = 5.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 568 PCYYFSFFFCLNRLRVRIIDDF 503
P YF +FF NR+ + ++D F
Sbjct: 1797 PKGYFGYFFKTNRVEMEVLDSF 1818
>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 459
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 173 QLTHIIEQRHLRIDGIEKMLRDDLLDLFHQYCVP 274
+L I E+ L GI K+L+DDLL +F+ + P
Sbjct: 254 RLLKITEREFLLYTGILKILKDDLL-VFYTFIPP 286
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 25.8 bits (54), Expect = 7.0
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +2
Query: 317 LNRTRHISPEPSRSLNKIKETRHTTVERIKPPPDLLSGHMKRIKLENVTTKCSHMNSNNH 496
LN+ S P + KE T + DLLS ++RIK + + +SNNH
Sbjct: 1869 LNKKFDSSARPFDEIEMEKEVL-TLKSNLAQKDDLLSSLVERIKQIEMFALKTQKDSNNH 1927
Query: 497 KRK 505
+ +
Sbjct: 1928 REE 1930
>SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 263
Score = 25.4 bits (53), Expect = 9.3
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = +2
Query: 356 SLNKIKETRHTTVERIKPPPDLLSGHMKRIKLENVTTKCSHMNSNNHKRKIINDPNSEP 532
SLN I + T ERI+ + S ++ + +T + N N +++ +S P
Sbjct: 82 SLNYISALKETAKERIRVTVPVYSSRKSYVQTKPITHSAENENGNETSDELVFFQHSIP 140
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 25.4 bits (53), Expect = 9.3
Identities = 9/33 (27%), Positives = 22/33 (66%)
Frame = +3
Query: 42 VGAIKLQIISVSMLHVIKSSSLTSEKQWLFLTK 140
+ + LQII ++ L ++KS +L ++ + F+++
Sbjct: 254 ISSSSLQIIDINTLSLVKSINLKDDESFSFISR 286
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,880,712
Number of Sequences: 5004
Number of extensions: 57661
Number of successful extensions: 158
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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