Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_H04
         (787 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0489 - 24196037-24196105,24196199-24196279,24196358-241964...    31   1.0  
08_02_1437 - 27096364-27097252,27098931-27099022,27099382-270996...    31   1.0  
09_04_0739 - 19833462-19834456,19835272-19835333,19835846-198359...    31   1.4  
03_02_0672 - 10325935-10326150,10326308-10326400,10326568-103267...    30   1.8  
12_02_0874 + 23915303-23915543,23915630-23915713,23915797-239163...    29   3.2  
10_01_0168 - 1883380-1883594,1884572-1888325                           29   4.2  
08_01_0136 - 1077800-1077811,1077929-1078046,1079410-1079549,107...    28   7.3  

>11_06_0489 -
           24196037-24196105,24196199-24196279,24196358-24196438,
           24196513-24196614,24196693-24196782,24196865-24196945,
           24197021-24197122,24197198-24197287,24197368-24197448,
           24197524-24197622,24197720-24198055,24198142-24198228,
           24198318-24198413,24198499-24198732,24198792-24199036,
           24199119-24199383
          Length = 712

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 332 HISPEPSRSLNKIKETRHTTVERIKPPPDLLSGHMKRIKLENVTTK 469
           HI+ + S   + +K TR   V+ I PP     G  ++  LEN ++K
Sbjct: 659 HITAKQSSIKSSVKRTRTNCVDSILPPDKAKQGPQRKGVLENTSSK 704


>08_02_1437 -
           27096364-27097252,27098931-27099022,27099382-27099654,
           27099872-27100819
          Length = 733

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 21/83 (25%), Positives = 34/83 (40%)
 Frame = +2

Query: 278 GQRKYRDSGRGKILNRTRHISPEPSRSLNKIKETRHTTVERIKPPPDLLSGHMKRIKLEN 457
           G +  R S  G    +++  S   +    K  E R T+  R KP  +    H    K++ 
Sbjct: 279 GPKALRRSWEGNAEAKSKGNSDSKAAKTEKKSENRSTSTPRRKPLVEEKPLHKDDSKIQT 338

Query: 458 VTTKCSHMNSNNHKRKIINDPNS 526
              K S    ++   KI+N P+S
Sbjct: 339 PPRKSSASAPSDDSEKIVNKPSS 361


>09_04_0739 -
           19833462-19834456,19835272-19835333,19835846-19835937,
           19836271-19836540,19836795-19836913,19836947-19837778
          Length = 789

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = +2

Query: 278 GQRKYRDSGRGKILNRTRHISPEPSRSLNKIKETRHT--TVERIKPPPDLLSGHMKRIKL 451
           G +  R S  GK+  + +  S      L K  E R T  T+ R KPP D    H    KL
Sbjct: 278 GPKALRRSWEGKVDTKGKTNSDSKMTKLEKKPENRGTMATIPRRKPPVDEKVQHKDDSKL 337

Query: 452 ENVTTK 469
           +N   K
Sbjct: 338 QNPAKK 343


>03_02_0672 -
           10325935-10326150,10326308-10326400,10326568-10326708,
           10326828-10326893,10327099-10327359
          Length = 258

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +2

Query: 209 IDGIEKMLRDDLLDLFHQYCVPYGQRKYRDSGRGKILNRTRHISPE 346
           +  + K+ RD LLD      VPYG  + +D   GKI  +  H S E
Sbjct: 50  VGSLAKVFRDGLLDAVDLSLVPYGNARVKD---GKISCQVEHGSEE 92


>12_02_0874 +
           23915303-23915543,23915630-23915713,23915797-23916312,
           23916426-23916482,23916630-23916802,23916886-23917014,
           23917102-23917296,23917381-23917503,23918171-23918284
          Length = 543

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
 Frame = +2

Query: 320 NRTRHISPEPSRSLNKIKETRHTTVERIKP-PPDLLSGHMKRIKLENVTTKCSHMNSNNH 496
           N  + ISP     L+ IK   +  +E++K  P D    + +R+K+         MN ++ 
Sbjct: 386 NYEKEISP---LFLDSIKRLVNDEIEKVKGFPLDSTVPYRERLKILAGLVNPDDMNLSSA 442

Query: 497 KRKIINDPNSEPIQAKKERKVITWP 571
           +RK++   N +P+ ++ +      P
Sbjct: 443 ERKLVQAYNEKPVLSRPQHNFYVGP 467


>10_01_0168 - 1883380-1883594,1884572-1888325
          Length = 1322

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = +2

Query: 29  NNXMRXSYKTSNNLSFNVARN*IFLFNVGKTMAVPHEMLLHPELLSNEQLTHIIEQRHLR 208
           NN  R   + +     +   + I L+ +GK      +     ELLSN    H++  RH  
Sbjct: 484 NNGDRVQLRYTTTCKIHDLMHDIALYVMGKECVTITDRSYRKELLSNRSTYHLLVSRHRT 543

Query: 209 IDGIEKMLR 235
            D  +  LR
Sbjct: 544 GDHFDDFLR 552


>08_01_0136 -
           1077800-1077811,1077929-1078046,1079410-1079549,
           1079627-1080313
          Length = 318

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +2

Query: 281 QRKYRDSGRGKILNRTRHISPEPSRSLNKIKETRHTTVERIKPP 412
           +RK R  GRG +  RT+++S   SR L K +E     V  ++ P
Sbjct: 8   RRKGRRGGRGNVKRRTKYLS--LSRFLIKKEEEEEVVVVAVRSP 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,792,344
Number of Sequences: 37544
Number of extensions: 317905
Number of successful extensions: 683
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)