Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_H04
(787 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50330| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-17) 33 0.26
SB_58418| Best HMM Match : DUF1110 (HMM E-Value=3.7) 31 0.80
SB_5980| Best HMM Match : Stig1 (HMM E-Value=1.4) 31 0.80
SB_14926| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_8256| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_44194| Best HMM Match : PEGSRP (HMM E-Value=8) 29 4.3
SB_40639| Best HMM Match : CAP_GLY (HMM E-Value=0) 28 7.5
SB_20707| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048) 28 9.9
SB_4758| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
>SB_50330| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-17)
Length = 452
Score = 33.1 bits (72), Expect = 0.26
Identities = 35/164 (21%), Positives = 63/164 (38%), Gaps = 6/164 (3%)
Frame = +2
Query: 278 GQRKYRDSGRGKILNRTRHISPEPSRSLNKI--KETRHTTVERIKPPPDLLSGHMKRIKL 451
G++++ D I +H SP ++ +NK K T T ER + + K+
Sbjct: 283 GRKRFPDDVTSSITGNPKHPSPN-NKQINKQTNKRTNEQTNERTNERTNKQRDNKNEKKI 341
Query: 452 ENVTTKCSHMNSNNHKRKIINDPNSEPIQAKKERKVITWPXX----XXXXXXXXXXXRYI 619
TT +++ +H+R ++ +Q ++ R T P
Sbjct: 342 NKTTTSVIYLSLCDHERHLL-------VQVQEHRNSPTPPISMIVVTSPSSEALEHAGSS 394
Query: 620 NEDVQNAQEI*SIQQDLKNNIAMSFTQYIVMYQKLCNFFVLSLF 751
++ A E S+++DL I Y+V Y FF+L F
Sbjct: 395 SKSTDTAPEQNSMERDLLRMIYAIIVIYLVCYLPYQIFFLLEYF 438
>SB_58418| Best HMM Match : DUF1110 (HMM E-Value=3.7)
Length = 474
Score = 31.5 bits (68), Expect = 0.80
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = +2
Query: 134 HEMLLHPELLSNEQLTHIIEQRHLRIDGIEKMLRDDLL--DLFHQYCVPYGQRKYRDSGR 307
HE L P++ + L + + HLR++G+ + D + L + CV +G R +G
Sbjct: 28 HESNLVPDIARVDYLAGNLSRTHLRLEGLPTFVDDVYVFGYLRREDCVVHGGRLSCSTGE 87
Query: 308 GKILNRTRH-ISPEPSRSLNK 367
G T H IS SL K
Sbjct: 88 GGAAKTTVHRISTAVYESLGK 108
>SB_5980| Best HMM Match : Stig1 (HMM E-Value=1.4)
Length = 712
Score = 31.5 bits (68), Expect = 0.80
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 14/82 (17%)
Frame = +2
Query: 350 SRSLNKIKETRHTTVERIKPPPDLLSG------HMKR---IKLENVTTKCSHMNSNN--H 496
+RS ++KE + V RI+PP + G H++R I+L NV T+ + N H
Sbjct: 578 NRSAKELKELKPGDVVRIEPPRGIGRGKEWTKAHVERKVDIRLYNVRTEDGRVFRRNRRH 637
Query: 497 KRKIIND---PNSEPIQAKKER 553
R+ D P EP+Q +ER
Sbjct: 638 LRRTQEDMKPPTDEPLQPPQER 659
>SB_14926| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1638
Score = 29.5 bits (63), Expect = 3.2
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 14/103 (13%)
Frame = +2
Query: 287 KYRDSGRGKILNRTRHISPEPSRSLNKIKETRHTTVERIKPPPDLLSG------HMKR-- 442
K D+ KI + S +RS ++KE + V RI+PP + G H++R
Sbjct: 1185 KIPDNVEQKISGQKAKQSYYYNRSAKELKELKPGDVVRIEPPRGIGRGKAWTKAHVERKV 1244
Query: 443 -IKLENVTTKCSHMNSNN--HKRKIIND---PNSEPIQAKKER 553
++ NV T+ + N H R+ D P EP+Q +ER
Sbjct: 1245 DVRSYNVRTEDGRVFRRNRRHLRRTQEDMKPPTDEPLQPPQER 1287
>SB_8256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 624
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 296 DSGRGKILNRTRHISPEPSRSLNKIKETRHTTVERIK 406
D GRG N SP+P R+ +++ + T E K
Sbjct: 37 DRGRGTARNNYSRYSPQPGRTTSRVHHSNQKTTEASK 73
>SB_44194| Best HMM Match : PEGSRP (HMM E-Value=8)
Length = 207
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 326 TRHISPEPSRSLNKIKETRHTTVERIKPPPDLLSGHMKRIKL 451
++H P P RS I RH++ PPP + H R+ L
Sbjct: 29 SKHTPPSPPRSAVFITIARHSSKHTPPPPPRSVVFHYHRVTL 70
>SB_40639| Best HMM Match : CAP_GLY (HMM E-Value=0)
Length = 709
Score = 28.3 bits (60), Expect = 7.5
Identities = 31/105 (29%), Positives = 39/105 (37%), Gaps = 1/105 (0%)
Frame = +2
Query: 245 LDLFHQYCVPYGQRKYRDSGRGKILNRTRHISPEPSRSLNKIKETRHTTVERIKPPPDLL 424
LD F C G R+ GK LNR R + + ETRHT P L
Sbjct: 128 LDFFRASC---GGIHGREGTEGK-LNRNRKPEQGTGKRNMMLAETRHTHAVPSSQAPALS 183
Query: 425 SGHMK-RIKLENVTTKCSHMNSNNHKRKIINDPNSEPIQAKKERK 556
S H K IK + K + R + N E KK+R+
Sbjct: 184 SRHRKPEIKKSHSPNKRLKTRCLHACRGSYSGSNPEAKTEKKKRE 228
>SB_20707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/71 (25%), Positives = 32/71 (45%)
Frame = +2
Query: 353 RSLNKIKETRHTTVERIKPPPDLLSGHMKRIKLENVTTKCSHMNSNNHKRKIINDPNSEP 532
RS+ + K T + P+ L ++ NVT K + S H + +DP E
Sbjct: 74 RSVERSKHYPTTKPTTVADTPENLRLRIQSQNQSNVTYKKDYEESKGHYTAVTDDP--EV 131
Query: 533 IQAKKERKVIT 565
I+AK+ +++
Sbjct: 132 IRAKQNMNIVS 142
>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
Length = 1952
Score = 27.9 bits (59), Expect = 9.9
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 314 ILNRTRHISPEPSRSLNKIKET-RHTTVERIKPPPDLLSGHMKRIKLENVTT 466
++N T ISP P+R+ + + ET T I P P+ + M N TT
Sbjct: 236 VVNTTTSISPSPNRTTSSMYETITVNTTTSISPSPNETTSSMYVTIAVNSTT 287
>SB_4758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 788
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/73 (24%), Positives = 33/73 (45%)
Frame = +2
Query: 287 KYRDSGRGKILNRTRHISPEPSRSLNKIKETRHTTVERIKPPPDLLSGHMKRIKLENVTT 466
KY +S + ++L + E +SL+ + ER+ D+LS + +I+ T
Sbjct: 5 KYSESSKKRLL---LEVDLEYPKSLHDLHNDYQLAAERVNVSKDMLSEYCSKIEPNRHTN 61
Query: 467 KCSHMNSNNHKRK 505
+ S N KR+
Sbjct: 62 RSSLKTDPNLKRQ 74
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,367,149
Number of Sequences: 59808
Number of extensions: 392376
Number of successful extensions: 1073
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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