Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_H04
         (787 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35719-2|CAA84799.2|  715|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z68217-1|CAA92465.1|  461|Caenorhabditis elegans Hypothetical pr...    29   5.0  
AF016420-5|AAB65309.1|  651|Caenorhabditis elegans Na/ca exchang...    29   5.0  
Z83744-4|CAB06040.4|  735|Caenorhabditis elegans Hypothetical pr...    28   8.7  
AF000264-12|AAK70648.2|  467|Caenorhabditis elegans Hypothetical...    28   8.7  

>Z35719-2|CAA84799.2|  715|Caenorhabditis elegans Hypothetical
           protein F17C8.3 protein.
          Length = 715

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 653 SIQQDLKNNIAMSFTQYIVMYQKLCNFFVLSL 748
           ++  DL N   +  T Y+V Y+  C+FF++ L
Sbjct: 412 NLNNDLHNRATLGLTTYLVSYRFPCSFFLIEL 443


>Z68217-1|CAA92465.1|  461|Caenorhabditis elegans Hypothetical
           protein F58G6.1 protein.
          Length = 461

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +2

Query: 152 PELLSNEQLTHIIEQRHLRIDGIEKMLRDDLLDLFHQYCVPYGQRKYRDSGRGKIL 319
           PE    E LT I +   ++ + +EK + DDL     QY   +   K +   RG+ L
Sbjct: 83  PEWPDREHLTAIFDNLDIQTNELEKTVCDDLPQTVTQYVNQFPDLKKKIEKRGRKL 138


>AF016420-5|AAB65309.1|  651|Caenorhabditis elegans Na/ca exchangers
           protein 9 protein.
          Length = 651

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 461 TTKCSHMNSNNHKRKIINDPNSEPIQAKKERKVIT 565
           TT  ++ ++ N KR I+N   SEP     ERK+ T
Sbjct: 277 TTNNNNNDNKNEKRGIVNLGFSEPYSIPSERKIST 311


>Z83744-4|CAB06040.4|  735|Caenorhabditis elegans Hypothetical
           protein C06A12.4 protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = +2

Query: 653 SIQQDLKNNI---AMSFTQYIVMYQKLCNFFVL 742
           SI +DLKN +   A S+    VM+ ++C+F V+
Sbjct: 518 SIAKDLKNGVIAPARSYASATVMFVQICDFIVI 550


>AF000264-12|AAK70648.2|  467|Caenorhabditis elegans Hypothetical
           protein F43E2.1 protein.
          Length = 467

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
 Frame = +2

Query: 176 LTHIIEQRHLRIDGIEKMLRDDLLDLFHQYCVPYGQRKYRDS-GRGKILNRTRHISPEPS 352
           L +    R+  I+ + +  +D  + +   Y V    R  R++    K L   + +  +P 
Sbjct: 304 LNYRFNMRNGEIEALSQKDQDYQITILDAYDVRNPGRSARNALDLVKTLEALKSLLVQPH 363

Query: 353 RSLNK--IKETRHTTVERIKPPPDLL 424
             + K  ++ TR+ T ER+ PPP +L
Sbjct: 364 EGMFKTVMEITRNRTYERVVPPPQVL 389


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,763,365
Number of Sequences: 27780
Number of extensions: 319757
Number of successful extensions: 862
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)