Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_H02
(764 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 31 0.24
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 29 0.96
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa... 28 1.3
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos... 28 1.3
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo... 28 1.3
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 26 5.1
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 26 5.1
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 26 6.8
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 25 9.0
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha... 25 9.0
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 30.7 bits (66), Expect = 0.24
Identities = 18/82 (21%), Positives = 38/82 (46%)
Frame = +1
Query: 169 TLQKVKKNMNTINFQTFVNSFQNRLEPPVRQHLKNVYATLMMTCVSASAGVYVDMFTRFQ 348
T V+ TI+ ++F E + ++ N+ + ++ + A+ V V++ TR
Sbjct: 720 TFHFVENPKATIDIESFWTPVDVVEEKSAKTYIDNLVGVMRLSVIKANDLVNVELPTRKS 779
Query: 349 AGFLSAIVGAGLMLMLIATPDN 414
+ IVG ++ + TP+N
Sbjct: 780 DPYARVIVGNSVVARTVYTPNN 801
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 28.7 bits (61), Expect = 0.96
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -3
Query: 255 NWWFQSILKAVDKGLKIYCIHVFFYFLK 172
NWW++S + G+ ++ VF++F K
Sbjct: 553 NWWWRSFITPGFCGIYVFIFSVFYWFFK 580
>SPAC977.06 |||S. pombe specific DUF999 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 189
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 44 ICLFYL*LVKLEYCCCVILKAINIL 118
ICLF L L+ L YC +++KAI ++
Sbjct: 128 ICLFVLLLLGLIYCSKIVVKAIPLI 152
>SPBC1348.07 |||S. pombe specific DUF999 protein family
6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 44 ICLFYL*LVKLEYCCCVILKAINIL 118
ICLF L L+ L YC +++KAI ++
Sbjct: 128 ICLFILLLLGLIYCSKIVVKAIPLI 152
>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 44 ICLFYL*LVKLEYCCCVILKAINIL 118
ICLF L L+ L YC +++KAI ++
Sbjct: 128 ICLFVLLLLGLIYCSKIVVKAIPLI 152
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 169 TLQKVKKNMNTINFQTFVNSFQNRLEP 249
TLQ K N +T NF ++VN + +P
Sbjct: 2171 TLQVFKSNEDTCNFYSYVNEYGESPKP 2197
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 26.2 bits (55), Expect = 5.1
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = -2
Query: 265 DADELVVPVDSESC*QRFENLLYSC----FFLLSEGSLNNDFNNMIYVILFEV*NIYSF 101
+ D+ + E C + EN L+S FLL SL+ND +N++ V NI +F
Sbjct: 386 EIDQTTLRAFGEICTGKLENTLFSNSELNLFLLHYLSLDNDLSNILKVDFQNGHNICTF 444
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 25.8 bits (54), Expect = 6.8
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 738 YKTAHEHEAKIKMSLVQE 685
Y TAH +E K K+ L+QE
Sbjct: 291 YPTAHPYEIKTKLYLIQE 308
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 25.4 bits (53), Expect = 9.0
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Frame = -1
Query: 635 NSVINVPPRNSQL--PRSASIAAAEKHTNTRV--VPSRAVIMIDGSTTLTYS--SRGPML 474
N+ + +PPR + R +++ + ++ V VPS + ++ TT S SR PML
Sbjct: 318 NNPVYLPPRGNPTVNDRVSNVLPSITSFDSSVTTVPSNSPATLNSYTTSVPSGMSRHPML 377
Query: 473 MPDVNPNPS 447
M P PS
Sbjct: 378 MNPSTPEPS 386
>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 370
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +1
Query: 154 NHCLKTLQKVKKNMNTINFQTFVNSFQNRLE 246
NH KT+QK+K+ I + F R++
Sbjct: 185 NHIAKTIQKIKEKAPHILVEALTPDFSGRMD 215
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,003,574
Number of Sequences: 5004
Number of extensions: 62257
Number of successful extensions: 170
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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