Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_G24
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    42   9e-05
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    29   0.72 
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    29   0.95 
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3...    28   1.3  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    27   2.9  
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    27   2.9  
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    27   3.8  
SPAC16E8.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.8  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    26   5.0  
SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos...    26   6.7  
SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family ...    25   8.8  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    25   8.8  

>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 41.9 bits (94), Expect = 9e-05
 Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
 Frame = +1

Query: 532 KSEWRCRDGT-CISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACVDGTAPC 708
           K  W+C      ISF+   D   DCPD SDE     G + C +  F C     +    P 
Sbjct: 43  KGNWKCLGSDKLISFNQVNDDYCDCPDGSDEP----GTSACHNGKFFCKNTGYISSYIPS 98

Query: 709 N----GIXECADNSDELL 750
           N     + +C D SDE L
Sbjct: 99  NRVDDTVCDCCDGSDESL 116



 Score = 25.8 bits (54), Expect = 6.7
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +1

Query: 517 TSNCKKSEWRCRDGTCISF----DGKCDGVVDCPDSSDETHALCGKTTCQ 654
           TS C   ++ C++   IS     +   D V DC D SDE+   C  T  Q
Sbjct: 76  TSACHNGKFFCKNTGYISSYIPSNRVDDTVCDCCDGSDESLIKCPNTCAQ 125


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 565 ISFDGKCDGVVDCPDSSDETHA 630
           +S DG  DGV D PDS+D++ +
Sbjct: 37  LSMDGSNDGVKDSPDSNDDSQS 58


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 340 TNPYDSSCSYNEFECGDGGCVSI 408
           TN Y++SC Y  F   DGG VSI
Sbjct: 224 TNVYNTSCEYPRFWGEDGGPVSI 246


>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 449

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = -1

Query: 623 VSSLESGQSTTPSHLPSNEMHVPSRQRHSDFLQLE-VCLRRL---ELCNPNFA 477
           V  L +    +P+H P  E+H  SR  +S  + +E V   RL   E+ N +FA
Sbjct: 42  VGELATSNLPSPAHPPFGELHQESRTSNSSAMHIENVVASRLMYNEVANGSFA 94


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 23/74 (31%), Positives = 31/74 (41%)
 Frame = -1

Query: 620 SSLESGQSTTPSHLPSNEMHVPSRQRHSDFLQLEVCLRRLELCNPNFAGIS*QTVSSSAP 441
           SS    +  T SHLP+    VPS  +     QL      +    P+ A +S  T S S  
Sbjct: 287 SSSSPFKKKTQSHLPNRTTEVPSISK-----QLSKSSTSIATVAPSLASVSSVTKSPSPT 341

Query: 440 EQSSMPLQTLSMLT 399
            QS+   Q+ S  T
Sbjct: 342 PQSAPRAQSASTET 355


>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -1

Query: 719 WIPLQGAVPSTHAPYVQRNQLLWHVVFPQ-SAWVSSLESGQSTTPSH 582
           ++PL+      H+P        W  ++P  S + S+ E+ +STTP H
Sbjct: 514 YVPLESNTVYQHSPTYDTYG--WQSMYPSYSVYPSNYENSRSTTPYH 558


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -1

Query: 719 WIPLQGAVPSTHAPYVQRNQLLWHVVFPQSAWVSSLESGQSTT 591
           W P +  +P   AP    NQ+LW   F      S L +G+ T+
Sbjct: 711 WYPTR--LPDHMAPMESINQILWKPTFETMGLYSLLIAGEDTS 751


>SPAC16E8.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 170

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -1

Query: 542 HSDFLQLEVCLRRLELCNPNF 480
           HS+ L+LE C +++E+  PNF
Sbjct: 57  HSNVLRLEHCYQKMEMKLPNF 77


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 448 EDETVCYEIPAKFGLHSSRRRRQTSNCKKS 537
           EDE    E+  ++  H   RRR+T+N +++
Sbjct: 91  EDERCARELANRYNSHRPERRRKTNNDRRN 120


>SPAC607.05 |rpn9||19S proteasome regulatory subunit
           Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -1

Query: 443 PEQSSMPLQTLSMLTQPPSPHSNSL*LHELSYGLVIFVRTEDVTNNIT 300
           P Q ++   T++  T+ PS     L +  LS GL+  V  ++VT  +T
Sbjct: 291 PNQRTLTFDTIARATRIPSNEVELLIMRALSVGLITGV-IDEVTQIVT 337


>SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 668 RNQLLWHVVFPQSAWVSSLESGQSTTPSHL 579
           RN LL   + P ++WV  L+S    TPS L
Sbjct: 168 RNTLLLSTLKPSTSWVLWLDSDIVETPSTL 197


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 516 LSTPS-RAMQSKFCGYFVADSLIFGTRTILYAVADSVDAHAA 394
           LS P  RA  S F GY +A +   G  + +YA A  V A A+
Sbjct: 119 LSPPKYRAFLSWFLGYVLALAYSTGFASTIYAAAGLVQATAS 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,762,012
Number of Sequences: 5004
Number of extensions: 54139
Number of successful extensions: 164
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)