Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_G24
(755 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1134 + 27892208-27892302,27892489-27892585,27893031-278930... 37 0.015
01_01_1206 - 9702128-9702184,9702272-9702323,9702410-9702471,970... 36 0.026
02_04_0282 - 21569089-21569165,21569836-21569946,21570036-215701... 35 0.061
10_08_0775 + 20484776-20486035 33 0.25
06_01_1084 + 8883301-8883515,8883736-8884063,8884764-8885022,888... 33 0.25
03_05_0111 - 20919291-20919439,20920128-20920237,20920341-209204... 31 0.75
01_06_1535 + 38057802-38057999,38058338-38058437,38058730-380588... 31 1.3
09_06_0038 - 20415363-20415883,20415917-20416596,20416858-204169... 29 3.0
10_01_0016 + 190329-191210,206896-207033,208029-208103,208533-20... 28 7.0
01_05_0439 - 22159425-22159520,22160137-22160345,22161028-221610... 28 7.0
10_02_0141 + 5761931-5762020,5762170-5762201,5762453-5762604,576... 28 9.2
09_04_0356 - 16925821-16925969,16926056-16926165,16926261-169263... 28 9.2
02_01_0479 + 3453989-3454092,3454674-3454706,3454757-3454853,345... 28 9.2
01_01_0860 - 6705087-6705490,6706900-6708573,6709714-6709801 28 9.2
>06_03_1134 +
27892208-27892302,27892489-27892585,27893031-27893092,
27893198-27893409,27893487-27893566,27894208-27894328,
27894644-27894731,27894815-27894931,27895031-27895140,
27895334-27895482
Length = 376
Score = 37.1 bits (82), Expect = 0.015
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +1
Query: 493 HSSRRRRQTSNCKKSEWRCRDG-TC-ISFDGKCDGVVDCPDSSDETHALCGKTTCQSNW 663
H RR EW+ + G TC +SFD KC G+ D ++ H CG++ +S W
Sbjct: 315 HIDERRLCCGTPPDCEWKAQAGNTCAVSFDWKCSGICDSVENMQWVHNRCGESE-KSLW 372
>01_01_1206 -
9702128-9702184,9702272-9702323,9702410-9702471,
9702578-9702665,9703027-9703095,9703224-9703281,
9703895-9703996,9704075-9704179,9704273-9704624,
9706005-9706100,9706427-9706501,9707192-9707370,
9707501-9707740,9707922-9708017,9708193-9708306,
9708428-9708527
Length = 614
Score = 36.3 bits (80), Expect = 0.026
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Frame = +1
Query: 544 RCRDGTC-ISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGA----CVDGTAPC 708
RCRDG+ + D D DCPD +DE G + C F C + +
Sbjct: 44 RCRDGSGRFARDKLNDDFCDCPDGTDEP----GTSACPEGKFYCQNAGHSPITIFSSRVN 99
Query: 709 NGIXECADNSDE 744
+GI +C D SDE
Sbjct: 100 DGICDCCDGSDE 111
>02_04_0282 -
21569089-21569165,21569836-21569946,21570036-21570145,
21570222-21570347,21570433-21570520,21570602-21570722,
21570814-21570886,21571533-21571596,21572250-21572452,
21572557-21572615,21572710-21572809,21574001-21574110
Length = 413
Score = 35.1 bits (77), Expect = 0.061
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +1
Query: 538 EWRCRDGT-CI-SFDGKCDGVVDCPDSSDETHALCGKTTC 651
EW+ + G C+ SFD C G+ + E HA CG TC
Sbjct: 354 EWKGQAGNVCVASFDWSCSGICKSVERIKEVHARCGHLTC 393
>10_08_0775 + 20484776-20486035
Length = 419
Score = 33.1 bits (72), Expect = 0.25
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Frame = +1
Query: 355 SSCSYNEFECGDGGCVSID-RVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCK 531
+S +Y +CG C SI R C+G +C YE P+ FG
Sbjct: 110 ASNTYRAEQCGSPLCKSIPTRNCSGDGECG--------YEAPSMFGDTFGIASTDAIAIG 161
Query: 532 KSEWRCRDGTCISFDGKCDGVVDCP 606
+E R G ++ DG DG +D P
Sbjct: 162 NAEGRLAFGCVVASDGSIDGAMDGP 186
>06_01_1084 +
8883301-8883515,8883736-8884063,8884764-8885022,
8885581-8885681
Length = 300
Score = 33.1 bits (72), Expect = 0.25
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +1
Query: 496 SSRRRRQTSNCKKSEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNW 663
SS R TS+C S WR R C++ KC D PD ++ T +S W
Sbjct: 126 SSTRPSGTSSC--SRWRSRSSVCVAQAAKC--ATDRPDIDNDLAQRLTGTRMESRW 177
>03_05_0111 -
20919291-20919439,20920128-20920237,20920341-20920466,
20920545-20920632,20920933-20921053,20921159-20921231,
20921399-20921462,20921543-20921739,20921844-20921899,
20922050-20922146,20923731-20923870
Length = 406
Score = 31.5 bits (68), Expect = 0.75
Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Frame = +1
Query: 493 HSSRRRRQTSNCKKSEWRCRDGT--CISFDGKCDGVVDCPDSSDETHALCGK 642
H RR EW+ + G SFD C G+ D E H CG+
Sbjct: 345 HVDDRRLCCGTQPDCEWKAQAGNVCAASFDWSCSGICKSADRMKEVHQRCGE 396
>01_06_1535 + 38057802-38057999,38058338-38058437,38058730-38058890,
38059166-38059363,38059442-38059534,38059732-38059854,
38060637-38060884,38061004-38061175,38061407-38061493,
38061523-38061786,38062415-38062577,38062839-38062926,
38063010-38063079,38063566-38063694,38063773-38063811,
38065539-38065760,38065935-38065999,38066095-38066288,
38066539-38066805,38066908-38066995,38067091-38067216,
38067291-38067400,38067523-38067671
Length = 1117
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +1
Query: 538 EWRCRDGT-CI-SFDGKCDGVVDCPDSSDETHALCGK 642
EW+ R G C+ SFD C GV D H CG+
Sbjct: 1071 EWKKRAGNVCVASFDWSCSGVCKSVDRMKHIHRACGE 1107
>09_06_0038 -
20415363-20415883,20415917-20416596,20416858-20416911,
20417440-20417489,20417665-20417800,20419030-20419128,
20419411-20419676
Length = 601
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -1
Query: 479 AGIS*QTVSSSAPEQSSMPLQTLSMLTQPPSPHSN 375
AG S VS+SAP SS P + + P SPHS+
Sbjct: 54 AGSSVAMVSASAPAASSSPSPSPAPAPAPSSPHSD 88
>10_01_0016 +
190329-191210,206896-207033,208029-208103,208533-208639,
209193-209250,210183-210242,210320-210394,210504-210641,
211766-211820,212134-212256,212645-212883
Length = 649
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +1
Query: 487 GLHSSRRRRQTSNCKKSEWRCRDGTCISFDGKCDGVVDCPDSSD 618
GL + R C+ + + R T FDGK D + PDS D
Sbjct: 215 GLQGEQITRHFIKCRLAPIKERSRTAFEFDGKHDPNCEDPDSLD 258
>01_05_0439 - 22159425-22159520,22160137-22160345,22161028-22161066,
22161196-22161356,22161447-22161518,22162002-22162183,
22162580-22162703,22164196-22164299,22165526-22165725,
22165838-22166069,22166156-22166239,22166329-22166386,
22166724-22166771,22167924-22168081,22168451-22168501,
22168585-22168658,22168760-22168835,22169685-22169729,
22169833-22169899,22169978-22170095,22170580-22170775,
22171551-22171640,22171985-22172039,22172755-22172975,
22173362-22173454,22173608-22173721,22173918-22173981,
22174081-22174181,22174306-22174447,22174528-22174729,
22174883-22174976,22176172-22176348
Length = 1248
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 541 WRCRDGTCISFDGKCDGVVDCPDSSDETHAL 633
W R TC++ G+C V C + D T L
Sbjct: 1020 WDVRTDTCVATVGRCQSAVLCMEYDDSTGIL 1050
>10_02_0141 +
5761931-5762020,5762170-5762201,5762453-5762604,
5763688-5763770,5764689-5764766,5764884-5764979,
5765076-5765345
Length = 266
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = -1
Query: 539 SDFLQLEVCLRRLELCNPNFAGIS*QTVSSSA-PEQSSMPLQTLSMLTQ-PPSPHSNS 372
S F +LE +RLE NP+ A + ++++ SS+P Q + Q PSP +N+
Sbjct: 152 SQFSRLEELKKRLESLNPSRASVDVSGMNTAQHATTSSVPQQAAAQNPQNAPSPANNA 209
>09_04_0356 -
16925821-16925969,16926056-16926165,16926261-16926386,
16926485-16926572,16926648-16926768,16926902-16926974,
16927395-16927458,16928019-16928062,16928160-16928218,
16928771-16928870,16929043-16929146
Length = 345
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +1
Query: 538 EWRCRDGT-CI-SFDGKCDGVVDCPDSSDETHALCGK 642
EW+ + G C+ SFD KC GV + + H+ C +
Sbjct: 299 EWKAQAGNICVASFDWKCSGVCNPVERLKYVHSRCSE 335
>02_01_0479 +
3453989-3454092,3454674-3454706,3454757-3454853,
3455023-3455081,3455545-3455619,3455726-3455798,
3455927-3456047,3456357-3456444,3456546-3456671,
3456771-3456880,3457004-3457152
Length = 344
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = +1
Query: 493 HSSRRRRQTSNCKKSEWRCRDG-TCI-SFDGKCDGVVDCPDSSDETHALCGK 642
H RR EW+ + G TC SFD +C G+ + E H C +
Sbjct: 283 HIDDRRLCCGTPPDCEWKAQAGNTCAASFDWRCSGICNSEGRIWEVHNKCAE 334
>01_01_0860 - 6705087-6705490,6706900-6708573,6709714-6709801
Length = 721
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -1
Query: 431 SMPLQTLSMLTQPPSPHSNSL*LHELSYGLVIFVRTEDVTNNITDK 294
S PL T + T SPH S L+EL ++ V ++V ITD+
Sbjct: 267 SSPLGTFFLKTVDASPHIKSHQLYELFDDVIREVGPDNVVQIITDR 312
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,543,624
Number of Sequences: 37544
Number of extensions: 344932
Number of successful extensions: 1151
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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