Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_G24
(755 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 89 4e-18
SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 85 4e-17
SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.) 80 2e-15
SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.) 79 3e-15
SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.) 79 4e-15
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.) 76 4e-14
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25) 69 4e-12
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26) 69 5e-12
SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45) 68 1e-11
SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20) 67 2e-11
SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45) 66 4e-11
SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44) 66 4e-11
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32) 65 7e-11
SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 2e-10
SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34) 63 3e-10
SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 4e-10
SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 5e-10
SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38) 58 8e-09
SB_55149| Best HMM Match : Ldl_recept_a (HMM E-Value=2.6e-23) 58 8e-09
SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 2e-08
SB_2014| Best HMM Match : MAM (HMM E-Value=0) 56 3e-08
SB_28040| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 5e-08
SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14) 54 9e-08
SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 9e-08
SB_31927| Best HMM Match : Ldl_recept_a (HMM E-Value=2.3e-27) 54 1e-07
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) 53 2e-07
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 7e-07
SB_43823| Best HMM Match : MAM (HMM E-Value=0) 52 7e-07
SB_10498| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-07) 51 9e-07
SB_33423| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-22) 49 4e-06
SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 46 4e-05
SB_45605| Best HMM Match : MAM (HMM E-Value=2.1e-16) 41 0.001
SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_21487| Best HMM Match : MAM (HMM E-Value=0) 40 0.002
SB_52309| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_17568| Best HMM Match : Ldl_recept_a (HMM E-Value=0.04) 38 0.012
SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24) 35 0.062
SB_16748| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.062
SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.082
SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17) 34 0.11
SB_43556| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-11) 34 0.11
SB_22527| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0) 33 0.33
SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71) 32 0.44
SB_20112| Best HMM Match : EGF (HMM E-Value=0) 32 0.58
SB_26157| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_25060| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_17635| Best HMM Match : CUB (HMM E-Value=0) 31 1.0
SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38) 30 1.8
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45) 30 1.8
SB_3108| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_33807| Best HMM Match : RNA_pol (HMM E-Value=2.7e-10) 29 3.1
SB_8580| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_47176| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_45915| Best HMM Match : CRAM_rpt (HMM E-Value=9.1e-20) 29 4.1
SB_37309| Best HMM Match : Toxin_29 (HMM E-Value=1.2) 29 4.1
SB_34218| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_49500| Best HMM Match : Collagen (HMM E-Value=1.8e-07) 29 5.4
SB_3253| Best HMM Match : Ldl_recept_a (HMM E-Value=0.00064) 28 7.1
SB_52147| Best HMM Match : EGF (HMM E-Value=0) 28 7.1
SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 28 7.1
SB_33203| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_5020| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_59209| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_33921| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_30354| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 89.0 bits (211), Expect = 4e-18
Identities = 44/130 (33%), Positives = 68/130 (52%), Gaps = 1/130 (0%)
Frame = +1
Query: 358 SCSYNEFEC-GDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKK 534
+C+ +E+ C CV + VC+G DC DE S + + + C
Sbjct: 2413 NCTQSEYSCRSTSRCVPLAFVCDGENDCGDGSDE-------------SEEQNCERATCDV 2459
Query: 535 SEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACVDGTAPCNG 714
+++RC+ GTCI+ + +CD DC D SDE C TC ++ F+CT G C+ ++ C+G
Sbjct: 2460 TQFRCKTGTCITREWRCDHQDDCGDGSDEQQ--CVNYTCPNHTFKCTSGHCIANSSVCDG 2517
Query: 715 IXECADNSDE 744
+CAD SDE
Sbjct: 2518 DTDCADGSDE 2527
Score = 83.8 bits (198), Expect = 1e-16
Identities = 47/131 (35%), Positives = 60/131 (45%), Gaps = 1/131 (0%)
Frame = +1
Query: 355 SSCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKK 534
+ C+ F C + CV RVC+GI+DC DE C+ + C
Sbjct: 3005 NQCAPYHFRCDNFRCVYRSRVCDGIDDCRDGSDERNCH----------------VTTCTA 3048
Query: 535 SEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYG-ACVDGTAPCN 711
++RC G CIS D CDG DC DSSDE C TC + RC G C+ C+
Sbjct: 3049 DQFRCPSGRCISRDWLCDGDNDCGDSSDEKAGEC-HVTCPAGQARCATGRRCIPSEWRCD 3107
Query: 712 GIXECADNSDE 744
G +C D SDE
Sbjct: 3108 GESDCEDGSDE 3118
Score = 83.4 bits (197), Expect = 2e-16
Identities = 46/133 (34%), Positives = 64/133 (48%), Gaps = 2/133 (1%)
Frame = +1
Query: 352 DSSCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCK 531
+++C+ +F C +G C+S +C+G DC DET + P R R NC
Sbjct: 2367 NATCTGAQFACDNGRCISTRLLCDGDNDCGDNSDETT-LQFPC------VRHR----NCT 2415
Query: 532 KSEWRCRD-GTCISFDGKCDGVVDCPDSSDETHAL-CGKTTCQSNWFRCTYGACVDGTAP 705
+SE+ CR C+ CDG DC D SDE+ C + TC FRC G C+
Sbjct: 2416 QSEYSCRSTSRCVPLAFVCDGENDCGDGSDESEEQNCERATCDVTQFRCKTGTCITREWR 2475
Query: 706 CNGIXECADNSDE 744
C+ +C D SDE
Sbjct: 2476 CDHQDDCGDGSDE 2488
Score = 82.6 bits (195), Expect = 3e-16
Identities = 53/155 (34%), Positives = 68/155 (43%), Gaps = 26/155 (16%)
Frame = +1
Query: 358 SCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDE-----TVCYEIPAKFG-----LHSS-- 501
+C +EF C +G CVS D +C+G +DC DE T C K G + SS
Sbjct: 2247 TCPAHEFTCPNGRCVSYDFLCDGEDDCGDFSDELRCPPTTCVPGQVKCGSKNLCIPSSWL 2306
Query: 502 -------------RRRRQTSNCKKSEWRCRDGTCISFDGKCDGVVDCPDSSDE-THALCG 639
R+ + C SE+RC G C+ +CDG DC D SDE T
Sbjct: 2307 CDGSDDCGDGWDERQDCRERPCNVSEFRCTSGECVPASWRCDGDNDCTDKSDEPTDCQRS 2366
Query: 640 KTTCQSNWFRCTYGACVDGTAPCNGIXECADNSDE 744
TC F C G C+ C+G +C DNSDE
Sbjct: 2367 NATCTGAQFACDNGRCISTRLLCDGDNDCGDNSDE 2401
Score = 82.2 bits (194), Expect = 4e-16
Identities = 41/129 (31%), Positives = 60/129 (46%)
Frame = +1
Query: 361 CSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKSE 540
C+ +++ C G C+S VC+ + DC DE C C +
Sbjct: 3168 CAKHQYRCASGRCISASWVCDHVNDCGDGSDEQQCI----------------NRTCADGQ 3211
Query: 541 WRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACVDGTAPCNGIX 720
+ C DG CI+ KCDG++DC D+SDE + G C ++C CVD C+ +
Sbjct: 3212 FSCDDGLCIARAWKCDGMMDCADASDEKGS--GHRWCPQRLYQCINHVCVDRRWLCDDMD 3269
Query: 721 ECADNSDEL 747
+C D SDEL
Sbjct: 3270 DCGDYSDEL 3278
Score = 81.8 bits (193), Expect = 5e-16
Identities = 42/129 (32%), Positives = 62/129 (48%), Gaps = 1/129 (0%)
Frame = +1
Query: 361 CSYNEFECGDGG-CVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKS 537
C ++C D C+S+ VC+GI C +DE+ C + + C
Sbjct: 2966 CKPGTYQCADNRKCISVLEVCDGIPSCPAGDDESNCGSV---------------NQCAPY 3010
Query: 538 EWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACVDGTAPCNGI 717
+RC + C+ CDG+ DC D SDE + C TTC ++ FRC G C+ C+G
Sbjct: 3011 HFRCDNFRCVYRSRVCDGIDDCRDGSDERN--CHVTTCTADQFRCPSGRCISRDWLCDGD 3068
Query: 718 XECADNSDE 744
+C D+SDE
Sbjct: 3069 NDCGDSSDE 3077
Score = 81.4 bits (192), Expect = 7e-16
Identities = 49/143 (34%), Positives = 69/143 (48%), Gaps = 5/143 (3%)
Frame = +1
Query: 334 KITNPY-----DSSCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHS 498
++ NPY ++SC+ +EF C G CV VC+G DC DE+ + A +
Sbjct: 2154 RLENPYRCVLSNASCASSEFACESGQCVRKSFVCDGDNDCHDGSDESSL--VCASW---- 2207
Query: 499 SRRRRQTSNCKKSEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTY 678
C+ + C +G CI+ CD DC D+SDE A C + TC ++ F C
Sbjct: 2208 --------TCEPGHFSCNNGRCINAKWVCDRENDCGDNSDE--ARCPEVTCPAHEFTCPN 2257
Query: 679 GACVDGTAPCNGIXECADNSDEL 747
G CV C+G +C D SDEL
Sbjct: 2258 GRCVSYDFLCDGEDDCGDFSDEL 2280
Score = 80.6 bits (190), Expect = 1e-15
Identities = 46/136 (33%), Positives = 64/136 (47%), Gaps = 2/136 (1%)
Frame = +1
Query: 343 NPYDSSCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTS 522
N + ++C+ ++F C G C+S D +C+G DC + DE K G
Sbjct: 3040 NCHVTTCTADQFRCPSGRCISRDWLCDGDNDCGDSSDE--------KAG-------ECHV 3084
Query: 523 NCKKSEWRCRDG-TCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRC-TYGACVDG 696
C + RC G CI + +CDG DC D SDE A C TC + FRC + C+
Sbjct: 3085 TCPAGQARCATGRRCIPSEWRCDGESDCEDGSDENSAQCTAITCSAETFRCYSDRRCIPN 3144
Query: 697 TAPCNGIXECADNSDE 744
C+G +C D SDE
Sbjct: 3145 QWKCDGESDCNDGSDE 3160
Score = 79.8 bits (188), Expect = 2e-15
Identities = 47/130 (36%), Positives = 57/130 (43%), Gaps = 1/130 (0%)
Frame = +1
Query: 358 SCSYNEFEC-GDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKK 534
+CS F C D C+ C+G DC+ DE C P K C K
Sbjct: 3127 TCSAETFRCYSDRRCIPNQWKCDGESDCNDGSDEKGC---PPK-------------QCAK 3170
Query: 535 SEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACVDGTAPCNG 714
++RC G CIS CD V DC D SDE C TC F C G C+ C+G
Sbjct: 3171 HQYRCASGRCISASWVCDHVNDCGDGSDEQQ--CINRTCADGQFSCDDGLCIARAWKCDG 3228
Query: 715 IXECADNSDE 744
+ +CAD SDE
Sbjct: 3229 MMDCADASDE 3238
Score = 77.4 bits (182), Expect = 1e-14
Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 1/148 (0%)
Frame = +1
Query: 304 ILFVTSSVLTKITNPYDSSCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAK 483
++F V T++ +C +F C +G C+ VC+G DC DE P+
Sbjct: 29 VIFRLQIVFTQVVTAR-LTCPPTKFLCANGMCIPKSAVCDGENDCGDMSDE------PSN 81
Query: 484 FGLHSSRRRRQTSNCKKSEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNW 663
H K E++C +G CI+ +CDG+ DC D SDE + CG+ TC+ +
Sbjct: 82 CSAHICD--------PKLEFQCANGRCINKKWRCDGMKDCADGSDE--STCGEGTCRPDE 131
Query: 664 FRCT-YGACVDGTAPCNGIXECADNSDE 744
+ C C+ + C+G +C DN DE
Sbjct: 132 WHCIGTSRCIPLSRVCDGTNDCGDNYDE 159
Score = 77.0 bits (181), Expect = 2e-14
Identities = 46/131 (35%), Positives = 63/131 (48%), Gaps = 3/131 (2%)
Frame = +1
Query: 361 CSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKSE 540
CS +F C +G C+S+ C+G DC DE Y A++ +C+ SE
Sbjct: 825 CSAGKFTCKNGHCISLRWKCDGENDCVDNSDEDE-YAGCAEW------------SCRASE 871
Query: 541 WRCR-DGTCISFDGKCDGVVDC--PDSSDETHALCGKTTCQSNWFRCTYGACVDGTAPCN 711
+RC+ CI +CDG DC PD SDE + T C ++ FRC G C C+
Sbjct: 872 FRCQASRKCIPLSWRCDGDYDCLAPDLSDEANCSVA-TNCSASMFRCANGQCKPRDWVCD 930
Query: 712 GIXECADNSDE 744
G +C D SDE
Sbjct: 931 GFDDCGDGSDE 941
Score = 75.4 bits (177), Expect = 5e-14
Identities = 40/129 (31%), Positives = 61/129 (47%)
Frame = +1
Query: 358 SCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKS 537
+C+ +F C DG C++ C+G+ DC+ A DE S R C +
Sbjct: 3206 TCADGQFSCDDGLCIARAWKCDGMMDCADASDEK------------GSGHRW----CPQR 3249
Query: 538 EWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACVDGTAPCNGI 717
++C + C+ CD + DC D SDE LC + C+++ FRC C+ C+G+
Sbjct: 3250 LYQCINHVCVDRRWLCDDMDDCGDYSDELRLLCRYSICRNSHFRCDNNKCIPKWNVCDGV 3309
Query: 718 XECADNSDE 744
C D SDE
Sbjct: 3310 YHCTDKSDE 3318
Score = 74.5 bits (175), Expect = 8e-14
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Frame = +1
Query: 436 CSGAEDETVCYEIPAKFGLHSSRRR-RQTSNCKKSEWRCRDGTCISFDGKCDGVVDCPDS 612
C+ + + VC P + L + R ++C SE+ C G C+ CDG DC D
Sbjct: 2138 CTVLDGKPVC-SCPQGYRLENPYRCVLSNASCASSEFACESGQCVRKSFVCDGDNDCHDG 2196
Query: 613 SDETHALCGKTTCQSNWFRCTYGACVDGTAPCNGIXECADNSDE 744
SDE+ +C TC+ F C G C++ C+ +C DNSDE
Sbjct: 2197 SDESSLVCASWTCEPGHFSCNNGRCINAKWVCDRENDCGDNSDE 2240
Score = 68.1 bits (159), Expect = 7e-12
Identities = 44/133 (33%), Positives = 61/133 (45%), Gaps = 5/133 (3%)
Frame = +1
Query: 361 CSYNEFECGDGGCVSIDRVCNGIEDCSGAEDE-TVCYEIPAKFGLHSSRRRRQTSNCKKS 537
C+ +EF C G CV C+G DC+ DE T C +R + C +
Sbjct: 2328 CNVSEFRCTSGECVPASWRCDGDNDCTDKSDEPTDC--------------QRSNATCTGA 2373
Query: 538 EWRCRDGTCISFDGKCDGVVDCPDSSDET--HALCGK-TTCQSNWFRC-TYGACVDGTAP 705
++ C +G CIS CDG DC D+SDET C + C + + C + CV
Sbjct: 2374 QFACDNGRCISTRLLCDGDNDCGDNSDETTLQFPCVRHRNCTQSEYSCRSTSRCVPLAFV 2433
Query: 706 CNGIXECADNSDE 744
C+G +C D SDE
Sbjct: 2434 CDGENDCGDGSDE 2446
Score = 65.7 bits (153), Expect = 4e-11
Identities = 45/141 (31%), Positives = 61/141 (43%), Gaps = 3/141 (2%)
Frame = +1
Query: 331 TKITNPYDSSCSYNEFECGDGG-CVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRR 507
TK T P C EF+C C+ + VC+ +DC DE C
Sbjct: 1038 TKATRP-TFGCHSTEFQCETSSRCIPLRFVCDADDDCGDRSDERNC-------------- 1082
Query: 508 RRQTSNCKKSEWRCRDGT-CISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCT-YG 681
CK E+ C +G CI CDG DC D SDE CG +C ++ +RC+
Sbjct: 1083 --TGKTCKPFEFACANGRHCIQRKWICDGENDCGDRSDEVD--CGLESCGNDRWRCSNTS 1138
Query: 682 ACVDGTAPCNGIXECADNSDE 744
C+ + C+G +C D SDE
Sbjct: 1139 RCIAKSQVCDGRVDCPDASDE 1159
Score = 64.9 bits (151), Expect = 7e-11
Identities = 40/131 (30%), Positives = 58/131 (44%), Gaps = 2/131 (1%)
Frame = +1
Query: 361 CSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKSE 540
C ++C + CV +C+ ++DC DE R + S C+ S
Sbjct: 3246 CPQRLYQCINHVCVDRRWLCDDMDDCGDYSDEL--------------RLLCRYSICRNSH 3291
Query: 541 WRCRDGTCISFDGKCDGVVDCPDSSDET-HALC-GKTTCQSNWFRCTYGACVDGTAPCNG 714
+RC + CI CDGV C D SDE + C + C+ + F+C CV A C+
Sbjct: 3292 FRCDNNKCIPKWNVCDGVYHCTDKSDEAPYRSCPARVACRKDQFKCLNRRCVPVRAVCDS 3351
Query: 715 IXECADNSDEL 747
+C D SDEL
Sbjct: 3352 NDDCGDISDEL 3362
Score = 64.5 bits (150), Expect = 9e-11
Identities = 37/128 (28%), Positives = 53/128 (41%), Gaps = 4/128 (3%)
Frame = +1
Query: 355 SSCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKK 534
++C +F C G C++ + C+ +DC DE C C
Sbjct: 2455 ATCDVTQFRCKTGTCITREWRCDHQDDCGDGSDEQQCVNY----------------TCPN 2498
Query: 535 SEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCT----YGACVDGTA 702
++C G CI+ CDG DC D SDE G +TC + FRC+ Y DG +
Sbjct: 2499 HTFKCTSGHCIANSSVCDGDTDCADGSDEKDCDLGTSTCGAGLFRCSCRPGYLLMSDGRS 2558
Query: 703 PCNGIXEC 726
C + EC
Sbjct: 2559 -CQDVDEC 2565
Score = 61.7 bits (143), Expect = 6e-10
Identities = 41/114 (35%), Positives = 51/114 (44%), Gaps = 2/114 (1%)
Frame = +1
Query: 358 SCSYNEFECGDGG-CVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKK 534
+C EF C +G C+ +C+G DC DE C GL S C
Sbjct: 1086 TCKPFEFACANGRHCIQRKWICDGENDCGDRSDEVDC-------GLES---------CGN 1129
Query: 535 SEWRCRDGT-CISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACVD 693
WRC + + CI+ CDG VDCPD+SDE CG C SN C C+D
Sbjct: 1130 DRWRCSNTSRCIAKSQVCDGRVDCPDASDEGPG-CGLDQCHSNNGGCAQ-LCMD 1181
Score = 60.1 bits (139), Expect = 2e-09
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Frame = +1
Query: 517 TSNCKKSEWRCRDGTCISFDGKCDGVVDCPDSSDE-THALCGKTTCQSNWFRCTYG-ACV 690
T C ++ C++G CIS KCDG DC D+SDE +A C + +C+++ FRC C+
Sbjct: 822 TPPCSAGKFTCKNGHCISLRWKCDGENDCVDNSDEDEYAGCAEWSCRASEFRCQASRKCI 881
Query: 691 DGTAPCNGIXEC--ADNSDE 744
+ C+G +C D SDE
Sbjct: 882 PLSWRCDGDYDCLAPDLSDE 901
Score = 53.6 bits (123), Expect = 2e-07
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Frame = +1
Query: 496 SSRRRRQTSNCKKSEWRCRDGT-CISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRC 672
+++ R T C +E++C + CI CD DC D SDE + C TC+ F C
Sbjct: 1037 ATKATRPTFGCHSTEFQCETSSRCIPLRFVCDADDDCGDRSDERN--CTGKTCKPFEFAC 1094
Query: 673 TYGA-CVDGTAPCNGIXECADNSDEL 747
G C+ C+G +C D SDE+
Sbjct: 1095 ANGRHCIQRKWICDGENDCGDRSDEV 1120
Score = 52.4 bits (120), Expect = 4e-07
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Frame = +1
Query: 511 RQT--SNCKKSEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYG- 681
RQT NC +++ C + CIS +CDG DC D SDE + C C+ ++C
Sbjct: 2919 RQTCLENCTNNDFMCDNYRCISRLWRCDGEDDCGDGSDEPDS-CPVRVCKPGTYQCADNR 2977
Query: 682 ACVDGTAPCNGIXECADNSDE 744
C+ C+GI C DE
Sbjct: 2978 KCISVLEVCDGIPSCPAGDDE 2998
Score = 52.4 bits (120), Expect = 4e-07
Identities = 29/107 (27%), Positives = 43/107 (40%)
Frame = +1
Query: 355 SSCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKK 534
S C + F C + C+ VC+G+ C+ DE PA+ C+K
Sbjct: 3285 SICRNSHFRCDNNKCIPKWNVCDGVYHCTDKSDEAPYRSCPARVA------------CRK 3332
Query: 535 SEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCT 675
+++C + C+ CD DC D SDE TC N C+
Sbjct: 3333 DQFKCLNRRCVPVRAVCDSNDDCGDISDELQCPSTNRTCAVNNGGCS 3379
Score = 45.6 bits (103), Expect = 4e-05
Identities = 33/104 (31%), Positives = 43/104 (41%), Gaps = 3/104 (2%)
Frame = +1
Query: 358 SCSYNEFEC-GDGGCVSIDRVCNGIEDCSGAE--DETVCYEIPAKFGLHSSRRRRQTSNC 528
SC +EF C C+ + C+G DC + DE C +NC
Sbjct: 866 SCRASEFRCQASRKCIPLSWRCDGDYDCLAPDLSDEANC---------------SVATNC 910
Query: 529 KKSEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSN 660
S +RC +G C D CDG DC D SDE CG +S+
Sbjct: 911 SASMFRCANGQCKPRDWVCDGFDDCGDGSDEKG--CGMFVMRSD 952
Score = 40.3 bits (90), Expect = 0.002
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 355 SSCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVC 465
++CS + F C +G C D VC+G +DC DE C
Sbjct: 908 TNCSASMFRCANGQCKPRDWVCDGFDDCGDGSDEKGC 944
Score = 34.3 bits (75), Expect = 0.11
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 346 PYDSSCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVC 465
P +C ++F+C + CV + VC+ +DC DE C
Sbjct: 3325 PARVACRKDQFKCLNRRCVPVRAVCDSNDDCGDISDELQC 3364
>SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 628
Score = 85.4 bits (202), Expect = 4e-17
Identities = 49/135 (36%), Positives = 64/135 (47%), Gaps = 5/135 (3%)
Frame = +1
Query: 355 SSCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKK 534
SSC EF C +G CV VC+G++DC + DE C F S C
Sbjct: 101 SSCRSWEFSCLNGRCVFYRLVCDGVDDCGDSSDEMSCNATATPFVPRS---------CHY 151
Query: 535 SEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCG--KTTCQSNWFRCTY---GACVDGT 699
E++C + C+ +CDG DC D SDET TTC ++W RC Y G C+ +
Sbjct: 152 WEFQCANRRCVYNSQRCDGQNDCGDWSDETGCSTPPIPTTCPADWVRCFYNSSGLCISTS 211
Query: 700 APCNGIXECADNSDE 744
CNG +C D DE
Sbjct: 212 WLCNGRVDCPDAWDE 226
Score = 84.6 bits (200), Expect = 8e-17
Identities = 47/134 (35%), Positives = 65/134 (48%), Gaps = 5/134 (3%)
Frame = +1
Query: 358 SCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKS 537
SC+ +F C +G C+S VC+ DC DE C P G ++R S+C+
Sbjct: 49 SCNSGQFSCSNGRCISRSWVCDRDNDCGDGSDERNC-SYPTT-GPWTTRPWTPISSCRSW 106
Query: 538 EWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKT-----TCQSNWFRCTYGACVDGTA 702
E+ C +G C+ + CDGV DC DSSDE T +C F+C CV +
Sbjct: 107 EFSCLNGRCVFYRLVCDGVDDCGDSSDEMSCNATATPFVPRSCHYWEFQCANRRCVYNSQ 166
Query: 703 PCNGIXECADNSDE 744
C+G +C D SDE
Sbjct: 167 RCDGQNDCGDWSDE 180
Score = 72.1 bits (169), Expect = 4e-13
Identities = 46/148 (31%), Positives = 63/148 (42%), Gaps = 12/148 (8%)
Frame = +1
Query: 340 TNPYDSSCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQT 519
T P SC N F C +G C+ + C+G DC DE P+ G
Sbjct: 3 TTPAHGSCPSNRFRCNNGRCIPMSWRCDGDNDCGDMSDEP-----PSCSG---------- 47
Query: 520 SNCKKSEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKT------------TCQSNW 663
+C ++ C +G CIS CD DC D SDE + T +C+S
Sbjct: 48 RSCNSGQFSCSNGRCISRSWVCDRDNDCGDGSDERNCSYPTTGPWTTRPWTPISSCRSWE 107
Query: 664 FRCTYGACVDGTAPCNGIXECADNSDEL 747
F C G CV C+G+ +C D+SDE+
Sbjct: 108 FSCLNGRCVFYRLVCDGVDDCGDSSDEM 135
Score = 56.4 bits (130), Expect = 2e-08
Identities = 35/96 (36%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Frame = +1
Query: 358 SCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKS 537
SC Y EF+C + CV + C+G DC DET C P + C
Sbjct: 148 SCHYWEFQCANRRCVYNSQRCDGQNDCGDWSDETGCSTPPIP------------TTCPAD 195
Query: 538 EWRC---RDGTCISFDGKCDGVVDCPDSSDETHALC 636
RC G CIS C+G VDCPD+ DE A C
Sbjct: 196 WVRCFYNSSGLCISTSWLCNGRVDCPDAWDEQPAQC 231
>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1712
Score = 80.2 bits (189), Expect = 2e-15
Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 2/133 (1%)
Frame = +1
Query: 355 SSCSYNEFECGDGGCVSIDRV--CNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNC 528
S+C N C + I ++ C+G+ DC+ DE C C
Sbjct: 1305 STCKPNYISCASMKAICIPKMWRCDGMLDCTDKSDEEDC------------------PPC 1346
Query: 529 KKSEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACVDGTAPC 708
K++++RC +G CI D +CD +C D SDE G TC+ N+FRC G C+ C
Sbjct: 1347 KENQFRCDNGQCIDGDPRCDKYKNCTDGSDEL----GCATCEPNFFRCNTGKCISARWQC 1402
Query: 709 NGIXECADNSDEL 747
+ + +C DNSDE+
Sbjct: 1403 DQLDDCGDNSDEI 1415
Score = 62.9 bits (146), Expect = 3e-10
Identities = 31/80 (38%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +1
Query: 514 QTSNCKKSEWRCRD--GTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGAC 687
+ S CK + C CI +CDG++DC D SDE C+ N FRC G C
Sbjct: 1303 EPSTCKPNYISCASMKAICIPKMWRCDGMLDCTDKSDEEDC----PPCKENQFRCDNGQC 1358
Query: 688 VDGTAPCNGIXECADNSDEL 747
+DG C+ C D SDEL
Sbjct: 1359 IDGDPRCDKYKNCTDGSDEL 1378
Score = 35.1 bits (77), Expect = 0.062
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 355 SSCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVC 465
++C N F C G C+S C+ ++DC DE C
Sbjct: 1381 ATCEPNFFRCNTGKCISARWQCDQLDDCGDNSDEIGC 1417
>SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1288
Score = 79.4 bits (187), Expect = 3e-15
Identities = 42/129 (32%), Positives = 62/129 (48%)
Frame = +1
Query: 358 SCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKS 537
+CS NE CG+G CV VC+ +DC DE C C+ +
Sbjct: 666 TCSENEITCGNGICVVKRWVCDQDDDCGDGTDELNC----------------APHTCRPN 709
Query: 538 EWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACVDGTAPCNGI 717
E+ C D CI +CDG DC D+SDE + C+S+ ++C+ G C+ + C+G
Sbjct: 710 EFTCADKRCILSRWRCDGDRDCADNSDEINCPNSSQYCKSSEYQCSTGECIHKSWVCDGE 769
Query: 718 XECADNSDE 744
+C + SDE
Sbjct: 770 FDCLNKSDE 778
Score = 69.7 bits (163), Expect = 2e-12
Identities = 40/125 (32%), Positives = 56/125 (44%)
Frame = +1
Query: 373 EFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKSEWRCR 552
+F C +G C+ VC+ +DC DE R T C ++E C
Sbjct: 631 QFRCTNGRCIPRRWVCDKDDDCHDGSDE---------------RNSCATMTCSENEITCG 675
Query: 553 DGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACVDGTAPCNGIXECAD 732
+G C+ CD DC D +DE + C TC+ N F C C+ C+G +CAD
Sbjct: 676 NGICVVKRWVCDQDDDCGDGTDELN--CAPHTCRPNEFTCADKRCILSRWRCDGDRDCAD 733
Query: 733 NSDEL 747
NSDE+
Sbjct: 734 NSDEI 738
Score = 68.5 bits (160), Expect = 5e-12
Identities = 39/131 (29%), Positives = 59/131 (45%), Gaps = 2/131 (1%)
Frame = +1
Query: 358 SCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKS 537
+C NEF C D C+ C+G DC+ DE C + CK S
Sbjct: 705 TCRPNEFTCADKRCILSRWRCDGDRDCADNSDEINC--------------PNSSQYCKSS 750
Query: 538 EWRCRDGTCISFDGKCDGVVDCPDSSDETHA-LCGKTTCQSNWFRC-TYGACVDGTAPCN 711
E++C G CI CDG DC + SDE + + C+ F+C + C+ + C+
Sbjct: 751 EYQCSTGECIHKSWVCDGEFDCLNKSDENNCPTKPPSICKDGEFQCGSSKQCIPESKVCD 810
Query: 712 GIXECADNSDE 744
G +C +++DE
Sbjct: 811 GSVDCTNSADE 821
Score = 62.9 bits (146), Expect = 3e-10
Identities = 41/127 (32%), Positives = 55/127 (43%), Gaps = 1/127 (0%)
Frame = +1
Query: 370 NEFEC-GDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKSEWR 546
NEF C C++ C+G +DC DE C + T N +++R
Sbjct: 589 NEFTCVNTQKCIAATWKCDGEDDCGDNSDEINC--------------PKATCN-PDTQFR 633
Query: 547 CRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACVDGTAPCNGIXEC 726
C +G CI CD DC D SDE ++ C TC N C G CV C+ +C
Sbjct: 634 CTNGRCIPRRWVCDKDDDCHDGSDERNS-CATMTCSENEITCGNGICVVKRWVCDQDDDC 692
Query: 727 ADNSDEL 747
D +DEL
Sbjct: 693 GDGTDEL 699
Score = 53.6 bits (123), Expect = 2e-07
Identities = 35/107 (32%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Frame = +1
Query: 361 CSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKSE 540
C +E++C G C+ VC+G DC DE C P K S CK E
Sbjct: 747 CKSSEYQCSTGECIHKSWVCDGEFDCLNKSDENNC---PTK----------PPSICKDGE 793
Query: 541 WRCRDG-TCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTY 678
++C CI CDG VDC +S+DE C C+ N C +
Sbjct: 794 FQCGSSKQCIPESKVCDGSVDCTNSADEPDN-CFINECKDNNGPCQH 839
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 655 SNWFRCTYGA-CVDGTAPCNGIXECADNSDEL 747
+N F C C+ T C+G +C DNSDE+
Sbjct: 588 NNEFTCVNTQKCIAATWKCDGEDDCGDNSDEI 619
>SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 79.0 bits (186), Expect = 4e-15
Identities = 42/121 (34%), Positives = 59/121 (48%)
Frame = +1
Query: 382 CGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKSEWRCRDGT 561
C +G CV + +C+G++DC + DE C P R C S++ C +
Sbjct: 308 CRNGRCVLKEWLCDGMDDCGDSSDEDNC---PT----------RPPYTCPPSDFTCANSQ 354
Query: 562 CISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACVDGTAPCNGIXECADNSD 741
C+ +CDG DC D SDE+ TTC +N FRC G C+ T C+ +C D SD
Sbjct: 355 CVPNSFRCDGENDCGDRSDES-GCKPTTTCSANEFRCDDGRCITSTFRCDREFDCTDRSD 413
Query: 742 E 744
E
Sbjct: 414 E 414
Score = 78.6 bits (185), Expect = 5e-15
Identities = 45/134 (33%), Positives = 61/134 (45%), Gaps = 1/134 (0%)
Frame = +1
Query: 346 PYDSSCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSN 525
PY +C ++F C + CV C+G DC DE+ C + T+
Sbjct: 340 PY--TCPPSDFTCANSQCVPNSFRCDGENDCGDRSDESGC---------------KPTTT 382
Query: 526 CKKSEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTY-GACVDGTA 702
C +E+RC DG CI+ +CD DC D SDE C TC F C + G C+ G
Sbjct: 383 CSANEFRCDDGRCITSTFRCDREFDCTDRSDERG--CVNKTCAPYEFTCAFSGRCIPGRF 440
Query: 703 PCNGIXECADNSDE 744
C+ +C D SDE
Sbjct: 441 RCDHRSDCLDGSDE 454
Score = 73.7 bits (173), Expect = 1e-13
Identities = 45/133 (33%), Positives = 58/133 (43%), Gaps = 2/133 (1%)
Frame = +1
Query: 352 DSSCSYNEFECG-DGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNC 528
+ +C+ EF C G C+ C+ DC DE C + +R C
Sbjct: 419 NKTCAPYEFTCAFSGRCIPGRFRCDHRSDCLDGSDEQNCQNV--------TRPTPPPVKC 470
Query: 529 KKSEWRCRDGT-CISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACVDGTAP 705
+K+E C DG C+ CDG DC D SDE A CG C S+ F CT C+
Sbjct: 471 RKNERMCADGNGCVHRRWICDGERDCLDGSDE--AGCGTIGCSSDEFTCTNQKCIPLPQK 528
Query: 706 CNGIXECADNSDE 744
C+G C D SDE
Sbjct: 529 CDGTDNCGDGSDE 541
Score = 48.4 bits (110), Expect = 6e-06
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Frame = +1
Query: 361 CSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVC--YEIP-----AKFGLHSSRRRRQT 519
CS +EF C + C+ + + C+G ++C DE +C +P A + +
Sbjct: 510 CSSDEFTCTNQKCIPLPQKCDGTDNCGDGSDEKMCPTPSVPPQPDIAYQPVSGDNTTQPG 569
Query: 520 SNCKKSEWRCRDGT-CISFDGKCDGVVDCPDSSDE 621
C + +RC T CI+ CD CP DE
Sbjct: 570 QVCPRDHFRCGSSTICIANSKVCDATPHCPHGEDE 604
Score = 39.1 bits (87), Expect = 0.004
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +1
Query: 526 CKKSEWRCRDGTCISFDGKCDGVVDCPDSSDE 621
C S+ C +G CI CDG DC D+SDE
Sbjct: 130 CDPSQHTCNNGQCIKASWLCDGASDCQDNSDE 161
Score = 38.3 bits (85), Expect = 0.007
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +1
Query: 622 THALCGKT---TCQSNWFRCTYGACVDGTAPCNGIXECADNSDEL 747
T LC T TC + C G C+ + C+G +C DNSDE+
Sbjct: 118 TCLLCSPTARMTCDPSQHTCNNGQCIKASWLCDGASDCQDNSDEM 162
Score = 33.9 bits (74), Expect = 0.14
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 358 SCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVC 465
+C ++ C +G C+ +C+G DC DE C
Sbjct: 129 TCDPSQHTCNNGQCIKASWLCDGASDCQDNSDEMNC 164
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +1
Query: 361 CSYNEFECGDGG-CVSIDRVCNGIEDCSGAEDETVC 465
C + F CG C++ +VC+ C EDE C
Sbjct: 572 CPRDHFRCGSSTICIANSKVCDATPHCPHGEDERNC 607
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 619 ETHALCGKTTCQSNWFRCTYGACVDGTAPCNGIXECADNSDE 744
+ H KT C G CV C+G+ +C D+SDE
Sbjct: 291 QLHLSTAKTCNPVTDHTCRNGRCVLKEWLCDGMDDCGDSSDE 332
>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1315
Score = 75.8 bits (178), Expect = 4e-14
Identities = 42/124 (33%), Positives = 57/124 (45%)
Frame = +1
Query: 373 EFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKSEWRCR 552
+F+C +G CVS D +C+G C DE C C S++ C
Sbjct: 1123 QFQCVNGQCVSRDLICDGDNACLDFSDEANC-------------------KCLSSKFACE 1163
Query: 553 DGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACVDGTAPCNGIXECAD 732
G CI G CDG DC D+SDE+ C C + ++C GACV C+G +C D
Sbjct: 1164 SGECIDVVGLCDGTDDCKDASDESR--CDH-KCSKDEYQCVSGACVKWPLTCDGKKDCED 1220
Query: 733 NSDE 744
+DE
Sbjct: 1221 GTDE 1224
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/93 (31%), Positives = 43/93 (46%)
Frame = +1
Query: 361 CSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKSE 540
C ++F C G C+ + +C+G +DC A DE+ C C K E
Sbjct: 1155 CLSSKFACESGECIDVVGLCDGTDDCKDASDESRC-----------------DHKCSKDE 1197
Query: 541 WRCRDGTCISFDGKCDGVVDCPDSSDETHALCG 639
++C G C+ + CDG DC D +DE +CG
Sbjct: 1198 YQCVSGACVKWPLTCDGKKDCEDGTDEP-GICG 1229
Score = 57.6 bits (133), Expect = 1e-08
Identities = 28/72 (38%), Positives = 39/72 (54%)
Frame = +1
Query: 529 KKSEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACVDGTAPC 708
K ++++C +G C+S D CDG C D SDE + C S+ F C G C+D C
Sbjct: 1120 KSTQFQCVNGQCVSRDLICDGDNACLDFSDEANC-----KCLSSKFACESGECIDVVGLC 1174
Query: 709 NGIXECADNSDE 744
+G +C D SDE
Sbjct: 1175 DGTDDCKDASDE 1186
Score = 37.9 bits (84), Expect = 0.009
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 352 DSSCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDE 456
D CS +E++C G CV C+G +DC DE
Sbjct: 1190 DHKCSKDEYQCVSGACVKWPLTCDGKKDCEDGTDE 1224
>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
Length = 147
Score = 68.9 bits (161), Expect = 4e-12
Identities = 41/129 (31%), Positives = 57/129 (44%)
Frame = +1
Query: 358 SCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKS 537
SC ++F+C +G CV + C+G C DE C C+ +
Sbjct: 37 SCHGDQFQCLNGMCVGQELRCDGDYACVDHSDERNCA-------------------CRSA 77
Query: 538 EWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACVDGTAPCNGI 717
E++C DG C+ C+G DC D SDE +C S C G CV + CNG+
Sbjct: 78 EFKCPDGKCVHPSKFCNGESDCTDGSDEWSC---DNSCSSR-HACADGTCVTWSLTCNGV 133
Query: 718 XECADNSDE 744
+C D SDE
Sbjct: 134 SDCQDGSDE 142
>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
Length = 351
Score = 68.5 bits (160), Expect = 5e-12
Identities = 41/129 (31%), Positives = 57/129 (44%)
Frame = +1
Query: 358 SCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKS 537
SC ++F+C +G CV + C+G C DE C C+ +
Sbjct: 37 SCHGDQFQCLNGMCVGQEVRCDGDYACVDHSDERNCA-------------------CRSA 77
Query: 538 EWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACVDGTAPCNGI 717
E++C DG C+ C+G DC D SDE +C S C G CV + CNG+
Sbjct: 78 EFKCPDGKCVHPSKFCNGESDCTDGSDEWSC---DNSCSSR-HACADGTCVTWSLTCNGV 133
Query: 718 XECADNSDE 744
+C D SDE
Sbjct: 134 SDCQDGSDE 142
Score = 64.1 bits (149), Expect = 1e-10
Identities = 36/95 (37%), Positives = 44/95 (46%)
Frame = +1
Query: 358 SCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKS 537
+C EF+C DG CV + CNG DC+ DE C N S
Sbjct: 73 ACRSAEFKCPDGKCVHPSKFCNGESDCTDGSDEWSC------------------DNSCSS 114
Query: 538 EWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGK 642
C DGTC+++ C+GV DC D SDE LCGK
Sbjct: 115 RHACADGTCVTWSLTCNGVSDCQDGSDEP-KLCGK 148
>SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45)
Length = 291
Score = 67.7 bits (158), Expect = 1e-11
Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Frame = +1
Query: 370 NEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKSEWRC 549
++F+C +G CV + C+G DC DE C C +++RC
Sbjct: 100 SQFKCNNGHCVHRNWKCDGSNDCRDGTDEVGC------------------GKCGSTQFRC 141
Query: 550 RDGTCISFDGKCDGVVDCPDSSDETHALCGKTT---CQSNWFRCTYGACVDGTAPCNGIX 720
R+G CI+ + CD DC D SDE C + C + +RC C+ C+ +
Sbjct: 142 RNGNCINRNYVCDKDNDCGDGSDE--VACSRLNGGWCGAGQYRCDNDRCIPLNWVCDRLN 199
Query: 721 ECADNSDE 744
+C DNSDE
Sbjct: 200 DCHDNSDE 207
Score = 63.7 bits (148), Expect = 2e-10
Identities = 29/71 (40%), Positives = 41/71 (57%)
Frame = +1
Query: 535 SEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACVDGTAPCNG 714
S+++C +G C+ + KCDG DC D +DE CGK C S FRC G C++ C+
Sbjct: 100 SQFKCNNGHCVHRNWKCDGSNDCRDGTDEVG--CGK--CGSTQFRCRNGNCINRNYVCDK 155
Query: 715 IXECADNSDEL 747
+C D SDE+
Sbjct: 156 DNDCGDGSDEV 166
Score = 52.4 bits (120), Expect = 4e-07
Identities = 25/88 (28%), Positives = 40/88 (45%)
Frame = +1
Query: 361 CSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKSE 540
C +F C +G C++ + VC+ DC DE C + + C +
Sbjct: 134 CGSTQFRCRNGNCINRNYVCDKDNDCGDGSDEVACSRLNGGW-------------CGAGQ 180
Query: 541 WRCRDGTCISFDGKCDGVVDCPDSSDET 624
+RC + CI + CD + DC D+SDE+
Sbjct: 181 YRCDNDRCIPLNWVCDRLNDCHDNSDES 208
Score = 35.1 bits (77), Expect = 0.062
Identities = 14/62 (22%), Positives = 28/62 (45%)
Frame = +1
Query: 361 CSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKSE 540
C ++ C + C+ ++ VC+ + DC DE+ C + K L+ + + K +
Sbjct: 176 CGAGQYRCDNDRCIPLNWVCDRLNDCHDNSDESGCRGVYGKRALNKKLKLDEPDEIKTLD 235
Query: 541 WR 546
R
Sbjct: 236 ER 237
>SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20)
Length = 772
Score = 66.9 bits (156), Expect = 2e-11
Identities = 31/74 (41%), Positives = 41/74 (55%)
Frame = +1
Query: 523 NCKKSEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACVDGTA 702
+C E++C +G CI + CDG C D SDET + C SN F C G C+ GT
Sbjct: 90 SCGSGEFQCDNGKCIRKNLYCDGDFACVDGSDET-----RCECPSNMFLCPSGECIMGTQ 144
Query: 703 PCNGIXECADNSDE 744
C+G +C DN+DE
Sbjct: 145 LCDGKKDCTDNTDE 158
Score = 48.0 bits (109), Expect = 8e-06
Identities = 30/98 (30%), Positives = 40/98 (40%)
Frame = +1
Query: 358 SCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKS 537
SC EF+C +G C+ + C+G C DET C C +
Sbjct: 90 SCGSGEFQCDNGKCIRKNLYCDGDFACVDGSDETRC-------------------ECPSN 130
Query: 538 EWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTC 651
+ C G CI CDG DC D++DE + KT C
Sbjct: 131 MFLCPSGECIMGTQLCDGKKDCTDNTDEKNC-AHKTEC 167
>SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)
Length = 622
Score = 65.7 bits (153), Expect = 4e-11
Identities = 30/73 (41%), Positives = 39/73 (53%)
Frame = +1
Query: 526 CKKSEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACVDGTAP 705
C + E+ C +G C+ CDG C D SDE H +C SN F C G C+ TA
Sbjct: 183 CLEDEFGCENGQCVKRGLLCDGDKACLDGSDEKHC-----SCPSNMFLCPSGECIPTTAL 237
Query: 706 CNGIXECADNSDE 744
CN +C+DN+DE
Sbjct: 238 CNNENDCSDNADE 250
Score = 41.9 bits (94), Expect = 5e-04
Identities = 28/104 (26%), Positives = 40/104 (38%)
Frame = +1
Query: 361 CSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKSE 540
C +EF C +G CV +C+G + C DE C +C +
Sbjct: 183 CLEDEFGCENGQCVKRGLLCDGDKACLDGSDEKHC-------------------SCPSNM 223
Query: 541 WRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRC 672
+ C G CI C+ DC D++DE + C C N C
Sbjct: 224 FLCPSGECIPTTALCNNENDCSDNADERN--CQYANCSLNNLGC 265
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/76 (27%), Positives = 28/76 (36%)
Frame = +1
Query: 358 SCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKS 537
SC N F C G C+ +CN DCS DE C RR + +
Sbjct: 218 SCPSNMFLCPSGECIPTTALCNNENDCSDNADERNCQYANCSLNNLGCRRNIDITQVNEE 277
Query: 538 EWRCRDGTCISFDGKC 585
E +C+ D +C
Sbjct: 278 ERKCKPLLSTYVDNEC 293
>SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44)
Length = 212
Score = 65.7 bits (153), Expect = 4e-11
Identities = 45/141 (31%), Positives = 61/141 (43%), Gaps = 3/141 (2%)
Frame = +1
Query: 331 TKITNPYDSSCSYNEFECGDGG-CVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRR 507
TK T P C EF+C C+ + VC+ +DC DE C
Sbjct: 65 TKATRP-TFGCHSTEFQCETSSRCIPLRFVCDADDDCGDRSDERNC-------------- 109
Query: 508 RRQTSNCKKSEWRCRDGT-CISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCT-YG 681
CK E+ C +G CI CDG DC D SDE CG +C ++ +RC+
Sbjct: 110 --TGKTCKPFEFACANGRHCIQRKWICDGENDCGDRSDEVD--CGLESCGNDRWRCSNTS 165
Query: 682 ACVDGTAPCNGIXECADNSDE 744
C+ + C+G +C D SDE
Sbjct: 166 RCIAKSQVCDGRVDCPDASDE 186
Score = 61.7 bits (143), Expect = 6e-10
Identities = 41/114 (35%), Positives = 51/114 (44%), Gaps = 2/114 (1%)
Frame = +1
Query: 358 SCSYNEFECGDGG-CVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKK 534
+C EF C +G C+ +C+G DC DE C GL S C
Sbjct: 113 TCKPFEFACANGRHCIQRKWICDGENDCGDRSDEVDC-------GLES---------CGN 156
Query: 535 SEWRCRDGT-CISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACVD 693
WRC + + CI+ CDG VDCPD+SDE CG C SN C C+D
Sbjct: 157 DRWRCSNTSRCIAKSQVCDGRVDCPDASDEGPG-CGLDQCHSNNGGCAQ-LCMD 208
Score = 53.6 bits (123), Expect = 2e-07
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Frame = +1
Query: 496 SSRRRRQTSNCKKSEWRCRDGT-CISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRC 672
+++ R T C +E++C + CI CD DC D SDE + C TC+ F C
Sbjct: 64 ATKATRPTFGCHSTEFQCETSSRCIPLRFVCDADDDCGDRSDERN--CTGKTCKPFEFAC 121
Query: 673 TYGA-CVDGTAPCNGIXECADNSDEL 747
G C+ C+G +C D SDE+
Sbjct: 122 ANGRHCIQRKWICDGENDCGDRSDEV 147
>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
Length = 1039
Score = 64.9 bits (151), Expect = 7e-11
Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 16/145 (11%)
Frame = +1
Query: 358 SCSYNEFECGDGG-CVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHS-----SRRRRQT 519
SC+ + + C +G C+ + +C+ + DC DE C GL++ ++ Q
Sbjct: 835 SCAADRYRCDNGKKCIPLKWICDSVADCDDKRDERNCIPANQIAGLNNKAIEEAKNILQE 894
Query: 520 S----NCKKSEWRC-RDGTCISFDGKCDGVVDCPDSSDETHALCGKTT----CQSNWFRC 672
S C + ++ C + C++ CD V DC D SDE + + C S+ F C
Sbjct: 895 SIVKGGCAEGQFACEKTNKCLAKSSLCDTVHDCDDGSDEKNCPISRRDEEFGCGSDKFTC 954
Query: 673 TYGA-CVDGTAPCNGIXECADNSDE 744
GA C+ T C+ I +C D+ DE
Sbjct: 955 DNGAKCLPLTWLCDSITDCMDSKDE 979
Score = 46.4 bits (105), Expect = 3e-05
Identities = 33/127 (25%), Positives = 47/127 (37%), Gaps = 2/127 (1%)
Frame = +1
Query: 361 CSYNEFECGDGG-CVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKS 537
C+ +F C C++ +C+ + DC DE C P RR + C
Sbjct: 901 CAEGQFACEKTNKCLAKSSLCDTVHDCDDGSDEKNC---PIS-------RRDEEFGCGSD 950
Query: 538 EWRCRDGT-CISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACVDGTAPCNG 714
++ C +G C+ CD + DC DS DE + C T R A V
Sbjct: 951 KFTCDNGAKCLPLTWLCDSITDCMDSKDEHN--CPATIPGKTLARAAQDAAVTAAQEAKR 1008
Query: 715 IXECADN 735
ADN
Sbjct: 1009 AALAADN 1015
Score = 37.5 bits (83), Expect = 0.012
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 484 FGLHSSRRRRQTSNCKKSEWRCRDGT-CISFDGKCDGVVDCPDSSDETHAL 633
+G + RR+ + +C +RC +G CI CD V DC D DE + +
Sbjct: 822 YGKPWALRRQCSCSCAADRYRCDNGKKCIPLKWICDSVADCDDKRDERNCI 872
>SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 63.7 bits (148), Expect = 2e-10
Identities = 26/73 (35%), Positives = 42/73 (57%)
Frame = +1
Query: 526 CKKSEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACVDGTAP 705
C+ +E+ C D CI +CDG DC D+SDE + C+S+ ++C+ G C+ +
Sbjct: 551 CRPNEFTCADKRCILSRWRCDGDRDCADNSDEINCPNSSQYCKSSEYQCSTGECIHKSWV 610
Query: 706 CNGIXECADNSDE 744
C+G +C + SDE
Sbjct: 611 CDGEFDCLNKSDE 623
Score = 56.0 bits (129), Expect = 3e-08
Identities = 31/89 (34%), Positives = 39/89 (43%)
Frame = +1
Query: 358 SCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKS 537
+C NEF C D C+ C+G DC+ DE C + CK S
Sbjct: 550 TCRPNEFTCADKRCILSRWRCDGDRDCADNSDEINC--------------PNSSQYCKSS 595
Query: 538 EWRCRDGTCISFDGKCDGVVDCPDSSDET 624
E++C G CI CDG DC + SDET
Sbjct: 596 EYQCSTGECIHKSWVCDGEFDCLNKSDET 624
Score = 37.5 bits (83), Expect = 0.012
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 646 TCQSNWFRCTYGACVDGTAPCNGIXECADNSDEL 747
TC+ N F C C+ C+G +CADNSDE+
Sbjct: 550 TCRPNEFTCADKRCILSRWRCDGDRDCADNSDEI 583
>SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34)
Length = 262
Score = 62.9 bits (146), Expect = 3e-10
Identities = 27/76 (35%), Positives = 40/76 (52%)
Frame = +1
Query: 517 TSNCKKSEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACVDG 696
+ C +++C +G CI KCD DC D+SDE + C +TC + F+C G C+
Sbjct: 185 SGTCAPGQFKCGNGKCIPSSWKCDHDNDCGDNSDENN--CPYSTCNPSQFKCDNGRCISS 242
Query: 697 TAPCNGIXECADNSDE 744
C+ +C D SDE
Sbjct: 243 KWRCDHDNDCGDMSDE 258
Score = 52.0 bits (119), Expect = 5e-07
Identities = 28/88 (31%), Positives = 40/88 (45%)
Frame = +1
Query: 358 SCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKS 537
+C+ +F+CG+G C+ C+ DC DE C S C S
Sbjct: 187 TCAPGQFKCGNGKCIPSSWKCDHDNDCGDNSDENNC----------------PYSTCNPS 230
Query: 538 EWRCRDGTCISFDGKCDGVVDCPDSSDE 621
+++C +G CIS +CD DC D SDE
Sbjct: 231 QFKCDNGRCISSKWRCDHDNDCGDMSDE 258
Score = 35.9 bits (79), Expect = 0.036
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 346 PYDSSCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVC 465
PY S+C+ ++F+C +G C+S C+ DC DE C
Sbjct: 223 PY-STCNPSQFKCDNGRCISSKWRCDHDNDCGDMSDERNC 261
>SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 62.5 bits (145), Expect = 4e-10
Identities = 45/143 (31%), Positives = 60/143 (41%), Gaps = 13/143 (9%)
Frame = +1
Query: 355 SSCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKK 534
S C +EFEC + CV +C+G DC DE C RR +T C
Sbjct: 19 SRCPRHEFECENKLCVPRTWLCDGDNDCHDGSDEKNC-----------ESRRMRTVKCGI 67
Query: 535 SEWRCRDGTCISFDGKCDGVVDCPDSSDETHAL--CGK------TTCQSN----WFRCTY 678
E+ C + TCI CDG+ DC D SDE+ C + TC++ C
Sbjct: 68 EEFDCGNSTCIPLTVLCDGLYDCADRSDESKKCEECAERNGGCSDTCRNTPRGAVCECPI 127
Query: 679 GACVDGTA-PCNGIXECADNSDE 744
G + G C I ECA+ D+
Sbjct: 128 GLTLGGGGHACVDIDECAEGKDD 150
Score = 56.0 bits (129), Expect = 3e-08
Identities = 35/113 (30%), Positives = 47/113 (41%), Gaps = 3/113 (2%)
Frame = +1
Query: 415 VCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKSEWRCRDGTCISFDGKCDGV 594
+C+G DC A DE V S C + E+ C + C+ CDG
Sbjct: 1 MCDGTVDCPDALDEIV-----------------NCSRCPRHEFECENKLCVPRTWLCDGD 43
Query: 595 VDCPDSSDETHALCGK---TTCQSNWFRCTYGACVDGTAPCNGIXECADNSDE 744
DC D SDE + + C F C C+ T C+G+ +CAD SDE
Sbjct: 44 NDCHDGSDEKNCESRRMRTVKCGIEEFDCGNSTCIPLTVLCDGLYDCADRSDE 96
Score = 43.6 bits (98), Expect = 2e-04
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Frame = +1
Query: 361 CSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETV-CYEIPAKFGLHSS--RRRRQTSNCK 531
C EF+CG+ C+ + +C+G+ DC+ DE+ C E + G S R + + C+
Sbjct: 65 CGIEEFDCGNSTCIPLTVLCDGLYDCADRSDESKKCEECAERNGGCSDTCRNTPRGAVCE 124
Query: 532 KSEWRCRDG---TCISFDGKCDGVVDCPDSSDETH 627
G C+ D +G DC + TH
Sbjct: 125 CPIGLTLGGGGHACVDIDECAEGKDDCSQTCANTH 159
>SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 62.1 bits (144), Expect = 5e-10
Identities = 38/128 (29%), Positives = 52/128 (40%), Gaps = 1/128 (0%)
Frame = +1
Query: 364 SYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKSEW 543
S + C +G + C+G DC DET C +C S++
Sbjct: 82 SAHHHTCSNGHLIYRHWRCDGENDCRDGSDETGC------------------GSCSSSQF 123
Query: 544 RCRDGTCISFDGKCDGVVDCPDSSDETHA-LCGKTTCQSNWFRCTYGACVDGTAPCNGIX 720
RCR+G C+S CD DC D SDE G C + +RC C+ C+
Sbjct: 124 RCRNGRCVSRSWVCDKDNDCGDGSDEVQCNRAGGGWCGAGRYRCDNDRCIPRNWVCDRDN 183
Query: 721 ECADNSDE 744
+C D SDE
Sbjct: 184 DCGDGSDE 191
Score = 56.8 bits (131), Expect = 2e-08
Identities = 29/67 (43%), Positives = 37/67 (55%)
Frame = +1
Query: 547 CRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACVDGTAPCNGIXEC 726
C +G I +CDG DC D SDET CG +C S+ FRC G CV + C+ +C
Sbjct: 88 CSNGHLIYRHWRCDGENDCRDGSDETG--CG--SCSSSQFRCRNGRCVSRSWVCDKDNDC 143
Query: 727 ADNSDEL 747
D SDE+
Sbjct: 144 GDGSDEV 150
Score = 52.8 bits (121), Expect = 3e-07
Identities = 34/99 (34%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
Frame = +1
Query: 358 SCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKS 537
SCS ++F C +G CVS VC+ DC DE C R C
Sbjct: 117 SCSSSQFRCRNGRCVSRSWVCDKDNDCGDGSDEVQC-------------NRAGGGWCGAG 163
Query: 538 EWRCRDGTCISFDGKCDGVVDCPDSSDET--HALCGKTT 648
+RC + CI + CD DC D SDET + GK T
Sbjct: 164 RYRCDNDRCIPRNWVCDRDNDCGDGSDETGCRGVYGKRT 202
>SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38)
Length = 130
Score = 58.0 bits (134), Expect = 8e-09
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Frame = +1
Query: 526 CKKSEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRC-TYGACVDGTA 702
C +E+RC +G CI+ +CD DC D+SDE C + C+ + F+C T C+ +
Sbjct: 4 CSATEFRCNNGRCITRAFRCDDEDDCLDNSDEQG--CSRKVCRDDQFQCGTSRKCIRKSK 61
Query: 703 PCNGIXECADNSDE 744
C+G +C+ DE
Sbjct: 62 ICDGKSDCSGGEDE 75
Score = 57.6 bits (133), Expect = 1e-08
Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 11/140 (7%)
Frame = +1
Query: 358 SCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKS 537
+CS EF C +G C++ C+ +DC DE C SR+ C+
Sbjct: 3 TCSATEFRCNNGRCITRAFRCDDEDDCLDNSDEQGC-----------SRK-----VCRDD 46
Query: 538 EWRC-RDGTCISFDGKCDGVVDCPDSSDETHALCGKT---------TCQSNWFRCTYGA- 684
+++C CI CDG DC DE + + +T C+ + RC G+
Sbjct: 47 QFQCGTSRKCIRKSKICDGKSDCSGGEDEKNCVKPQTPPPTPPLKPKCRISQRRCDNGSG 106
Query: 685 CVDGTAPCNGIXECADNSDE 744
CVD C+G+ +CAD SDE
Sbjct: 107 CVDRMKICDGMRDCADGSDE 126
Score = 37.9 bits (84), Expect = 0.009
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 340 TNPYDSSCSYNEFECGDG-GCVSIDRVCNGIEDCSGAEDETVC 465
T P C ++ C +G GCV ++C+G+ DC+ DE C
Sbjct: 87 TPPLKPKCRISQRRCDNGSGCVDRMKICDGMRDCADGSDERGC 129
>SB_55149| Best HMM Match : Ldl_recept_a (HMM E-Value=2.6e-23)
Length = 190
Score = 58.0 bits (134), Expect = 8e-09
Identities = 29/69 (42%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +1
Query: 523 NCKKSEWRC-RDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACVDGT 699
NC ++C DG CI +CDG +DCPDSSDE C TC S F C CV +
Sbjct: 89 NCGSRHFKCVSDGKCIPKSWRCDGEMDCPDSSDEEG--CVNRTCSSKEFNCN-NQCVPLS 145
Query: 700 APCNGIXEC 726
C+G +C
Sbjct: 146 WKCDGEKDC 154
Score = 42.3 bits (95), Expect = 4e-04
Identities = 29/108 (26%), Positives = 41/108 (37%), Gaps = 2/108 (1%)
Frame = +1
Query: 304 ILFVTSSVLTKITNPYDSSCSYNEFEC-GDGGCVSIDRVCNGIEDCSGAEDETVCYEIPA 480
+L VT+ ++ +C F+C DG C+ C+G DC + DE C
Sbjct: 71 LLAVTAECMSPAPEKLAKNCGSRHFKCVSDGKCIPKSWRCDGEMDCPDSSDEEGCV---- 126
Query: 481 KFGLHSSRRRRQTSNCKKSEWRCRDGTCISFDGKCDGVVDC-PDSSDE 621
C E+ C + C+ KCDG DC P DE
Sbjct: 127 ------------NRTCSSKEFNC-NNQCVPLSWKCDGEKDCRPGGFDE 161
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 649 CQSNWFRCTY-GACVDGTAPCNGIXECADNSDE 744
C S F+C G C+ + C+G +C D+SDE
Sbjct: 90 CGSRHFKCVSDGKCIPKSWRCDGEMDCPDSSDE 122
>SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 56.8 bits (131), Expect = 2e-08
Identities = 27/74 (36%), Positives = 36/74 (48%)
Frame = +1
Query: 526 CKKSEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACVDGTAP 705
C E++C G CIS +CD +C DSSDE C +N C+ G CV
Sbjct: 275 CASYEFQCTSGHCISGSSRCDSDYNCMDSSDEDGC-----KCFTNELTCSSGRCVPSINL 329
Query: 706 CNGIXECADNSDEL 747
C+G+ +C DEL
Sbjct: 330 CDGVKDCEQGLDEL 343
Score = 41.9 bits (94), Expect = 5e-04
Identities = 27/94 (28%), Positives = 36/94 (38%)
Frame = +1
Query: 361 CSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKSE 540
C+ EF+C G C+S C+ +C + DE C C +E
Sbjct: 275 CASYEFQCTSGHCISGSSRCDSDYNCMDSSDEDGC-------------------KCFTNE 315
Query: 541 WRCRDGTCISFDGKCDGVVDCPDSSDETHALCGK 642
C G C+ CDGV DC DE CG+
Sbjct: 316 LTCSSGRCVPSINLCDGVKDCEQGLDELR--CGE 347
Score = 38.7 bits (86), Expect = 0.005
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 361 CSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEI 474
C NE C G CV +C+G++DC DE C E+
Sbjct: 311 CFTNELTCSSGRCVPSINLCDGVKDCEQGLDELRCGEL 348
>SB_2014| Best HMM Match : MAM (HMM E-Value=0)
Length = 2282
Score = 56.0 bits (129), Expect = 3e-08
Identities = 27/74 (36%), Positives = 36/74 (48%)
Frame = +1
Query: 526 CKKSEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACVDGTAP 705
C E++C G CIS +CDG +C D SDE C +N C+ G CV
Sbjct: 209 CAPYEFQCTSGHCISGSSRCDGDYNCMDRSDEDGC-----KCFTNELTCSSGRCVQSINL 263
Query: 706 CNGIXECADNSDEL 747
C+G+ +C DEL
Sbjct: 264 CDGVRDCEYGLDEL 277
Score = 55.6 bits (128), Expect = 4e-08
Identities = 36/128 (28%), Positives = 51/128 (39%)
Frame = +1
Query: 361 CSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKSE 540
C+ EF+C G C+S C+G +C DE C C +E
Sbjct: 209 CAPYEFQCTSGHCISGSSRCDGDYNCMDRSDEDGC-------------------KCFTNE 249
Query: 541 WRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACVDGTAPCNGIX 720
C G C+ CDGV DC DE CG C+++ F C C+ ++ CN
Sbjct: 250 LTCSSGRCVQSINLCDGVRDCEYGLDELR--CG-DGCKNSEFLCPDSTCIPWSSTCNQST 306
Query: 721 ECADNSDE 744
+ + DE
Sbjct: 307 QASHCQDE 314
Score = 49.2 bits (112), Expect = 4e-06
Identities = 31/98 (31%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
Frame = +1
Query: 361 CSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKSE 540
C NE C G CV +C+G+ DC DE C + CK SE
Sbjct: 245 CFTNELTCSSGRCVQSINLCDGVRDCEYGLDELRCGD-----------------GCKNSE 287
Query: 541 WRCRDGTCISFDGKCDGVVD---CPDSSDETHALCGKT 645
+ C D TCI + C+ C D +D A+CG T
Sbjct: 288 FLCPDSTCIPWSSTCNQSTQASHCQDEADRP-AVCGLT 324
>SB_28040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 55.2 bits (127), Expect = 5e-08
Identities = 26/74 (35%), Positives = 36/74 (48%)
Frame = +1
Query: 526 CKKSEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACVDGTAP 705
C E++C G CIS +CD +C D SDE C +N C+ G CV
Sbjct: 231 CASYEFQCASGHCISGSSRCDSDYNCMDRSDEDGC-----KCFTNELTCSSGRCVPSINL 285
Query: 706 CNGIXECADNSDEL 747
C+G+ +C + DEL
Sbjct: 286 CDGVKDCEQDLDEL 299
Score = 41.9 bits (94), Expect = 5e-04
Identities = 27/94 (28%), Positives = 35/94 (37%)
Frame = +1
Query: 361 CSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKSE 540
C+ EF+C G C+S C+ +C DE C C +E
Sbjct: 231 CASYEFQCASGHCISGSSRCDSDYNCMDRSDEDGC-------------------KCFTNE 271
Query: 541 WRCRDGTCISFDGKCDGVVDCPDSSDETHALCGK 642
C G C+ CDGV DC DE CG+
Sbjct: 272 LTCSSGRCVPSINLCDGVKDCEQDLDELR--CGE 303
Score = 37.9 bits (84), Expect = 0.009
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 361 CSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEI 474
C NE C G CV +C+G++DC DE C E+
Sbjct: 267 CFTNELTCSSGRCVPSINLCDGVKDCEQDLDELRCGEL 304
>SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)
Length = 1217
Score = 54.4 bits (125), Expect = 9e-08
Identities = 26/74 (35%), Positives = 35/74 (47%)
Frame = +1
Query: 526 CKKSEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACVDGTAP 705
C E++C G CIS +CD +C D SDE C +N C+ G CV
Sbjct: 1104 CASYEFQCASGHCISGSSRCDSDYNCMDRSDEDGC-----KCFTNELTCSSGRCVPSINL 1158
Query: 706 CNGIXECADNSDEL 747
C+G+ +C DEL
Sbjct: 1159 CDGVKDCEHGLDEL 1172
Score = 42.7 bits (96), Expect = 3e-04
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +1
Query: 361 CSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLH 495
C NE C G CV +C+G++DC DE C +P + LH
Sbjct: 1140 CFTNELTCSSGRCVPSINLCDGVKDCEHGLDELRCVRLPDQRTLH 1184
Score = 40.7 bits (91), Expect = 0.001
Identities = 25/87 (28%), Positives = 32/87 (36%)
Frame = +1
Query: 361 CSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKSE 540
C+ EF+C G C+S C+ +C DE C C +E
Sbjct: 1104 CASYEFQCASGHCISGSSRCDSDYNCMDRSDEDGC-------------------KCFTNE 1144
Query: 541 WRCRDGTCISFDGKCDGVVDCPDSSDE 621
C G C+ CDGV DC DE
Sbjct: 1145 LTCSSGRCVPSINLCDGVKDCEHGLDE 1171
>SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 54.4 bits (125), Expect = 9e-08
Identities = 26/74 (35%), Positives = 35/74 (47%)
Frame = +1
Query: 526 CKKSEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACVDGTAP 705
C E++C G CIS +CD +C D SDE C +N C+ G CV
Sbjct: 194 CASYEFQCASGHCISGSSRCDSDYNCMDRSDEDGC-----KCFTNELTCSSGRCVPSINL 248
Query: 706 CNGIXECADNSDEL 747
C+G+ +C DEL
Sbjct: 249 CDGVKDCEHGLDEL 262
Score = 48.8 bits (111), Expect = 5e-06
Identities = 30/104 (28%), Positives = 38/104 (36%)
Frame = +1
Query: 361 CSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKSE 540
C+ EF+C G C+S C+ +C DE C C +E
Sbjct: 194 CASYEFQCASGHCISGSSRCDSDYNCMDRSDEDGC-------------------KCFTNE 234
Query: 541 WRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRC 672
C G C+ CDGV DC DE CG + C N C
Sbjct: 235 LTCSSGRCVPSINLCDGVKDCEHGLDELR--CGSSVCPLNSLNC 276
Score = 41.5 bits (93), Expect = 7e-04
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +1
Query: 361 CSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVC-YEIPAKFGLHSSRRRRQTSNCKKS 537
C NE C G CV +C+G++DC DE C + L+ + +Q S +S
Sbjct: 230 CFTNELTCSSGRCVPSINLCDGVKDCEHGLDELRCGSSVCPLNSLNCKDKHKQKS---QS 286
Query: 538 EWRCRDGTCISFDGKCD 588
+CR SF G+CD
Sbjct: 287 GEKCR----FSFKGRCD 299
>SB_31927| Best HMM Match : Ldl_recept_a (HMM E-Value=2.3e-27)
Length = 157
Score = 54.0 bits (124), Expect = 1e-07
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Frame = +1
Query: 535 SEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTT---CQSNWFRCTYGACVDGTAP 705
+++RCR+G CI+ + CD DC D SDE C + C + +RC C+
Sbjct: 3 TQFRCRNGNCINRNYVCDKDNDCGDGSDE--VACSRLNGGWCGAGQYRCDNDRCIPLNWV 60
Query: 706 CNGIXECADNSDE 744
C+ + +C DNSDE
Sbjct: 61 CDRLNDCHDNSDE 73
Score = 49.6 bits (113), Expect = 3e-06
Identities = 24/84 (28%), Positives = 39/84 (46%)
Frame = +1
Query: 373 EFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKSEWRCR 552
+F C +G C++ + VC+ DC DE C + + C ++RC
Sbjct: 4 QFRCRNGNCINRNYVCDKDNDCGDGSDEVACSRLNGGW-------------CGAGQYRCD 50
Query: 553 DGTCISFDGKCDGVVDCPDSSDET 624
+ CI + CD + DC D+SDE+
Sbjct: 51 NDRCIPLNWVCDRLNDCHDNSDES 74
Score = 35.1 bits (77), Expect = 0.062
Identities = 14/62 (22%), Positives = 28/62 (45%)
Frame = +1
Query: 361 CSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKSE 540
C ++ C + C+ ++ VC+ + DC DE+ C + K L+ + + K +
Sbjct: 42 CGAGQYRCDNDRCIPLNWVCDRLNDCHDNSDESGCRGVYGKRALNKKLKLDEPDEIKTLD 101
Query: 541 WR 546
R
Sbjct: 102 ER 103
Score = 31.1 bits (67), Expect = 1.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 655 SNWFRCTYGACVDGTAPCNGIXECADNSDEL 747
S FRC G C++ C+ +C D SDE+
Sbjct: 2 STQFRCRNGNCINRNYVCDKDNDCGDGSDEV 32
>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
Length = 1120
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +1
Query: 526 CKKSEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTY-GACVDGTA 702
C ++ C CI KCDG DC DSSDE + ++ C+ + F C G C+ +
Sbjct: 23 CDPGQFECTSSECIPDVLKCDGSEDCADSSDEINC-TKRSMCRVDQFECLIEGDCIPLSK 81
Query: 703 PCNGIXECADNSDEL 747
C+G +C +DE+
Sbjct: 82 HCDGTWDCQHGTDEM 96
Score = 46.4 bits (105), Expect = 3e-05
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Frame = +1
Query: 361 CSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKSE 540
C +FEC C+ C+G EDC+ + DE C + S C+ +
Sbjct: 23 CDPGQFECTSSECIPDVLKCDGSEDCADSSDEINC---------------TKRSMCRVDQ 67
Query: 541 WRCR-DGTCISFDGKCDGVVDCPDSSDE 621
+ C +G CI CDG DC +DE
Sbjct: 68 FECLIEGDCIPLSKHCDGTWDCQHGTDE 95
Score = 37.9 bits (84), Expect = 0.009
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 355 SSCSYNEFECG-DGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKF 486
S C ++FEC +G C+ + + C+G DC DE C E+ F
Sbjct: 61 SMCRVDQFECLIEGDCIPLSKHCDGTWDCQHGTDEMDCQELMGIF 105
>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 52.4 bits (120), Expect = 4e-07
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +1
Query: 526 CKKSEWRCRDGTCISFDGKCDGVVD-CPDSSDETHALCGKTTCQSNWFRCTYGACVDGTA 702
C + C +G C++ +C+G+ D C D SDE+ CG + F+C+ G C++
Sbjct: 659 CLDHLFTCNNGECVTKTSRCNGMRDSCVDGSDESGCTCGL-----HEFQCSSGECIEVAT 713
Query: 703 PCNGIXECADNSDE 744
C+G +C D DE
Sbjct: 714 FCDGKKDCGDGFDE 727
Score = 49.6 bits (113), Expect = 3e-06
Identities = 35/100 (35%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
Frame = +1
Query: 361 CSYNEFECGDGGCVSIDRVCNGIED-CSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKS 537
C + F C +G CV+ CNG+ D C DE+ C GLH
Sbjct: 659 CLDHLFTCNNGECVTKTSRCNGMRDSCVDGSDESGC-----TCGLH-------------- 699
Query: 538 EWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQS 657
E++C G CI CDG DC D DETH CG S
Sbjct: 700 EFQCSSGECIEVATFCDGKKDCGDGFDETH--CGSCPVSS 737
Score = 43.2 bits (97), Expect = 2e-04
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 358 SCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIP 477
+C +EF+C G C+ + C+G +DC DET C P
Sbjct: 695 TCGLHEFQCSSGECIEVATFCDGKKDCGDGFDETHCGSCP 734
>SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 51.6 bits (118), Expect = 7e-07
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +1
Query: 526 CKKSEWRCRDGT-CISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGA-CVDGT 699
C +++CR CI CDGV DC D SDE C + C C C++ T
Sbjct: 6 CNDDQFQCRASKICIKSSFVCDGVPDCNDHSDEDD--CPNSDCNLEQIYCPVSQKCLNRT 63
Query: 700 APCNGIXECADNSDE 744
C+G +C+D SDE
Sbjct: 64 LQCDGKPDCSDYSDE 78
Score = 41.1 bits (92), Expect = 0.001
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Frame = +1
Query: 358 SCSYNEFECGDGG-CVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKK 534
+C+ ++F+C C+ VC+G+ DC+ DE C S+C
Sbjct: 5 TCNDDQFQCRASKICIKSSFVCDGVPDCNDHSDEDDC----------------PNSDCNL 48
Query: 535 SEWRCR-DGTCISFDGKCDGVVDCPDSSDETH 627
+ C C++ +CDG DC D SDE H
Sbjct: 49 EQIYCPVSQKCLNRTLQCDGKPDCSDYSDEAH 80
Score = 32.3 bits (70), Expect = 0.44
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 646 TCQSNWFRCTYGA-CVDGTAPCNGIXECADNSDE 744
TC + F+C C+ + C+G+ +C D+SDE
Sbjct: 5 TCNDDQFQCRASKICIKSSFVCDGVPDCNDHSDE 38
>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
Length = 1724
Score = 51.6 bits (118), Expect = 7e-07
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +1
Query: 526 CKKSEWRCRDGT-CISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGA-CVDGT 699
C +++CR CI CDGV DC D SDE C + C C C++ T
Sbjct: 1303 CNDDQFQCRASKICIKSSFVCDGVPDCNDHSDEDD--CPNSDCNLEQIYCPVSQKCLNRT 1360
Query: 700 APCNGIXECADNSDE 744
C+G +C+D SDE
Sbjct: 1361 LQCDGKPDCSDYSDE 1375
Score = 46.4 bits (105), Expect = 3e-05
Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 2/130 (1%)
Frame = +1
Query: 343 NPYDSSCSYNEFECGDGG-CVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQT 519
N +C+ ++F+C C+ VC+G+ DC+ DE C
Sbjct: 1297 NARPGTCNDDQFQCRASKICIKSSFVCDGVPDCNDHSDEDDC----------------PN 1340
Query: 520 SNCKKSEWRCR-DGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACVDG 696
S+C + C C++ +CDG DC D SDE H K+ ++ + C +
Sbjct: 1341 SDCNLEQIYCPVSQKCLNRTLQCDGKPDCSDYSDEAHCRVRKSINRNVVCKVGDWFCGNK 1400
Query: 697 TAPCNGIXEC 726
+ CN + +C
Sbjct: 1401 SDICNSLVDC 1410
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 523 NCKKSEWRCRD-GTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNW 663
NC +E RC++ G C+ CD DC D +DE LC T N+
Sbjct: 119 NCTANEVRCKNSGHCVQQQQVCDFTDDCGDGTDEDPTLCASRTANCNF 166
Score = 37.9 bits (84), Expect = 0.009
Identities = 35/126 (27%), Positives = 51/126 (40%), Gaps = 1/126 (0%)
Frame = +1
Query: 352 DSSCSYNEFECG-DGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNC 528
+S C+ + C C++ C+G DCS DE C + S R C
Sbjct: 1340 NSDCNLEQIYCPVSQKCLNRTLQCDGKPDCSDYSDEAHCR-------VRKSINRNVV--C 1390
Query: 529 KKSEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACVDGTAPC 708
K +W C + + I C+ +VDC S + LCG C N+ + GAC
Sbjct: 1391 KVGDWFCGNKSDI-----CNSLVDCGLSPVDKGKLCG--LCSDNYCK-NQGAC---AMQS 1439
Query: 709 NGIXEC 726
GI +C
Sbjct: 1440 TGIRKC 1445
Score = 36.7 bits (81), Expect = 0.020
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 361 CSYNEFECG-DGGCVSIDRVCNGIEDCSGAEDETVC 465
C NEF C D C++I C+G DC+ EDE C
Sbjct: 338 CQSNEFYCSKDDRCINIFWKCDGESDCTDGEDEQGC 373
Score = 36.7 bits (81), Expect = 0.020
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 526 CKKSEWRC-RDGTCISFDGKCDGVVDCPDSSDE 621
C+ +E+ C +D CI+ KCDG DC D DE
Sbjct: 338 CQSNEFYCSKDDRCINIFWKCDGESDCTDGEDE 370
Score = 32.7 bits (71), Expect = 0.33
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +1
Query: 358 SCSYNEFECGDGG-CVSIDRVCNGIEDCSGA--EDETVC 465
+C+ NE C + G CV +VC+ +DC ED T+C
Sbjct: 119 NCTANEVRCKNSGHCVQQQQVCDFTDDCGDGTDEDPTLC 157
Score = 32.3 bits (70), Expect = 0.44
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 646 TCQSNWFRCTYGA-CVDGTAPCNGIXECADNSDE 744
TC + F+C C+ + C+G+ +C D+SDE
Sbjct: 1302 TCNDDQFQCRASKICIKSSFVCDGVPDCNDHSDE 1335
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 637 GKTTCQSNWFRCTYG-ACVDGTAPCNGIXECADNSDE 744
G CQSN F C+ C++ C+G +C D DE
Sbjct: 334 GVYKCQSNEFYCSKDDRCINIFWKCDGESDCTDGEDE 370
Score = 30.3 bits (65), Expect = 1.8
Identities = 33/138 (23%), Positives = 53/138 (38%), Gaps = 7/138 (5%)
Frame = +1
Query: 355 SSCSYNEFECGD--GGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNC 528
S CS +EF+C + GC +C+ G +D+ + +R C
Sbjct: 1462 SDCSNDEFKCPEQPSGCAGRGILCSTQMGICGYDDDQI---------------KRYCGVC 1506
Query: 529 KKSEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKT--TCQSNWFRCTYG---ACVD 693
+ R GTC S +G C S + ++C K TC + C G C +
Sbjct: 1507 YPG-YCSRHGTCSSNNG----TRTCKCSPSWSGSVCSKLNITCPAGLIPCAVGDNGQCEN 1561
Query: 694 GTAPCNGIXECADNSDEL 747
T+ C+ +C D+L
Sbjct: 1562 STSVCSNNYDCGLTQDQL 1579
>SB_10498| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-07)
Length = 106
Score = 51.2 bits (117), Expect = 9e-07
Identities = 19/34 (55%), Positives = 25/34 (73%)
Frame = +1
Query: 520 SNCKKSEWRCRDGTCISFDGKCDGVVDCPDSSDE 621
S C S++ CRDGTCI + C+G +DCPD+SDE
Sbjct: 2 STCPGSKYECRDGTCIDRNEHCNGKIDCPDASDE 35
Score = 41.1 bits (92), Expect = 0.001
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 355 SSCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVC 465
S+C +++EC DG C+ + CNG DC A DE C
Sbjct: 2 STCPGSKYECRDGTCIDRNEHCNGKIDCPDASDEKGC 38
Score = 38.3 bits (85), Expect = 0.007
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 643 TTCQSNWFRCTYGACVDGTAPCNGIXECADNSDE 744
+TC + + C G C+D CNG +C D SDE
Sbjct: 2 STCPGSKYECRDGTCIDRNEHCNGKIDCPDASDE 35
>SB_33423| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-22)
Length = 133
Score = 49.2 bits (112), Expect = 4e-06
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 11/104 (10%)
Frame = +1
Query: 343 NPYDSSCSYNEFECGDGG-CVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHS-----SR 504
N SC+ + + C +G C+ + +C+ + DC DE C GL+S ++
Sbjct: 17 NSAGGSCAADRYRCDNGKKCIPLKWICDSVADCDDKRDERNCIPANQIAGLNSKAIEEAK 76
Query: 505 RRRQTS----NCKKSEWRC-RDGTCISFDGKCDGVVDCPDSSDE 621
Q S C + ++ C + C++ CD V DC D SDE
Sbjct: 77 NILQESTVKGGCAEGQFACEKTNKCLAKSSLCDTVHDCDDGSDE 120
Score = 35.9 bits (79), Expect = 0.036
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Frame = +1
Query: 484 FGLHSSRRRRQTSN----CKKSEWRCRDGT-CISFDGKCDGVVDCPDSSDETHAL 633
+ +H SRR ++ C +RC +G CI CD V DC D DE + +
Sbjct: 5 YTIHRSRREAAKNSAGGSCAADRYRCDNGKKCIPLKWICDSVADCDDKRDERNCI 59
>SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +1
Query: 523 NCKKSEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYG 681
+C + E+ C G C+ CDG DC DSSDE LC + ++ +YG
Sbjct: 215 SCSEEEFPCASGDCVPLTSVCDGSADCSDSSDEAPELCVRYPDPLHYIVLSYG 267
Score = 44.4 bits (100), Expect = 1e-04
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 358 SCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDET--VCYEIP 477
SCS EF C G CV + VC+G DCS + DE +C P
Sbjct: 215 SCSEEEFPCASGDCVPLTSVCDGSADCSDSSDEAPELCVRYP 256
Score = 38.3 bits (85), Expect = 0.007
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 628 ALCGKTTCQSNWFRCTYGACVDGTAPCNGIXECADNSDE 744
A+ +C F C G CV T+ C+G +C+D+SDE
Sbjct: 209 AILSPMSCSEEEFPCASGDCVPLTSVCDGSADCSDSSDE 247
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 45.6 bits (103), Expect = 4e-05
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +1
Query: 520 SNCKKSEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTY--GACVD 693
S+C +++RC G CIS KCD DC D S+E ++ C T RC + G C D
Sbjct: 2781 SSCSSNQFRCDSGHCISSSSKCDFETDCCDGSEERNSTCTAYT------RCNFENGLC-D 2833
Query: 694 GTAP 705
T P
Sbjct: 2834 WTQP 2837
Score = 44.8 bits (101), Expect = 8e-05
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +1
Query: 346 PYDSSCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCY 468
P C Y +F C G C+ RVC+ +DC DE CY
Sbjct: 2088 PVVPMCQYGQFRCARGSCIDTGRVCDFTDDCGDNSDENNCY 2128
Score = 44.0 bits (99), Expect = 1e-04
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +1
Query: 526 CKKSEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRC 672
C+ ++RC G+CI CD DC D+SDE + C W+ C
Sbjct: 2093 CQYGQFRCARGSCIDTGRVCDFTDDCGDNSDENNCYNYNQRCNFQWYLC 2141
Score = 41.9 bits (94), Expect = 5e-04
Identities = 25/78 (32%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Frame = +1
Query: 526 CKKSEWRCRDGTCISFDGKCDGVVDCPDSSDET--HALCGKTTCQSNWFRCTYGACVD-- 693
C E RC +G CI+ CD DC D SDE + C Q NW G D
Sbjct: 2550 CNSGEHRCSNGQCINAIQVCDFKKDCSDGSDEATCQSTCNFEKDQCNWVNTQVGDTYDWV 2609
Query: 694 ---GTAPCNGIXECADNS 738
G P G D++
Sbjct: 2610 RNKGPTPSTGTGPTVDHT 2627
Score = 41.9 bits (94), Expect = 5e-04
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +1
Query: 526 CKKSEWRCRDGTCISFDGKCDGVVDCPDSSDE 621
C +S++RC G+C S D CD DC DSSDE
Sbjct: 3620 CTRSQFRCTRGSCTSSDNVCDFSDDCGDSSDE 3651
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +1
Query: 649 CQSNWFRCTYGACVDGTAPCNGIXECADNSDE 744
CQ FRC G+C+D C+ +C DNSDE
Sbjct: 2093 CQYGQFRCARGSCIDTGRVCDFTDDCGDNSDE 2124
Score = 39.5 bits (88), Expect = 0.003
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 361 CSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVC 465
C+ ++F C G C S D VC+ +DC + DE C
Sbjct: 3620 CTRSQFRCTRGSCTSSDNVCDFSDDCGDSSDERSC 3654
Score = 38.3 bits (85), Expect = 0.007
Identities = 21/52 (40%), Positives = 26/52 (50%)
Frame = +1
Query: 526 CKKSEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYG 681
C +RC DG+CI +CD DC D DE A CG TC +C +G
Sbjct: 2246 CPFGLFRCTDGSCIMQSLRCDYQNDCSDGLDE--ASCG--TCNFEADQCGWG 2293
Score = 38.3 bits (85), Expect = 0.007
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 643 TTCQSNWFRCTYGACVDGTAPCNGIXECADNSDE 744
++C SN FRC G C+ ++ C+ +C D S+E
Sbjct: 2781 SSCSSNQFRCDSGHCISSSSKCDFETDCCDGSEE 2814
Score = 37.9 bits (84), Expect = 0.009
Identities = 19/77 (24%), Positives = 33/77 (42%)
Frame = +1
Query: 346 PYDSSCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSN 525
P S+ S +C +GGC+ ++C+ +DC DE C PA+ + Q
Sbjct: 3199 PTCSTPSAGYVKCTNGGCIQKSKLCDFTDDCGDNSDEGRCALYPARCNFETDLCNWQQLT 3258
Query: 526 CKKSEWRCRDGTCISFD 576
++W G S++
Sbjct: 3259 DDDTDWTRMKGATPSYN 3275
Score = 37.5 bits (83), Expect = 0.012
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 361 CSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVC 465
C+ E C +G C++ +VC+ +DCS DE C
Sbjct: 2550 CNSGEHRCSNGQCINAIQVCDFKKDCSDGSDEATC 2584
Score = 37.1 bits (82), Expect = 0.015
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = +1
Query: 520 SNCKKSEWRC-RDGTCISFDGKCDGVVDCPDSSDETH--ALCGKTTCQSNW 663
+NC ++ C DG CI CD VDC D SDE + C T Q W
Sbjct: 3423 NNCNAQQFGCVTDGKCIPLTSVCDFNVDCLDGSDERSCPSNCTFETGQCGW 3473
Score = 35.9 bits (79), Expect = 0.036
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 355 SSCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDE 456
SSCS N+F C G C+S C+ DC +E
Sbjct: 2781 SSCSSNQFRCDSGHCISSSSKCDFETDCCDGSEE 2814
Score = 35.1 bits (77), Expect = 0.062
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 649 CQSNWFRCTYGACVDGTAPCNGIXECADNSDE 744
C + FRCT G+C C+ +C D+SDE
Sbjct: 3620 CTRSQFRCTRGSCTSSDNVCDFSDDCGDSSDE 3651
Score = 34.3 bits (75), Expect = 0.11
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 643 TTCQSNWFRCTYGACVDGTAPCNGIXECADNSDE 744
+T + + +CT G C+ + C+ +C DNSDE
Sbjct: 3202 STPSAGYVKCTNGGCIQKSKLCDFTDDCGDNSDE 3235
Score = 33.5 bits (73), Expect = 0.19
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1
Query: 361 CSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVC 465
C + F C DG C+ C+ DCS DE C
Sbjct: 2246 CPFGLFRCTDGSCIMQSLRCDYQNDCSDGLDEASC 2280
Score = 33.1 bits (72), Expect = 0.25
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 649 CQSNWFRCTYGACVDGTAPCNGIXECADNSDE 744
C S RC+ G C++ C+ +C+D SDE
Sbjct: 2550 CNSGEHRCSNGQCINAIQVCDFKKDCSDGSDE 2581
Score = 32.3 bits (70), Expect = 0.44
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = +1
Query: 526 CKKSEWRCRDGT----CISFDGKCDGVVDCPDSSDETHALCG 639
C +++C D T C++ KCD V DC D DE CG
Sbjct: 2998 CGAGKFQCTDLTGNKVCLANTKKCDFVPDCSDGIDEAIDTCG 3039
Score = 32.3 bits (70), Expect = 0.44
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +1
Query: 361 CSYNEFECGDGGCVSIDRVCNGIEDC--SGAEDETVC 465
C+ +EF+C GGC+ +C+ DC + DE+ C
Sbjct: 4059 CNTDEFKCSRGGCIPKSYLCDYQADCMFNDLSDESKC 4095
Score = 31.9 bits (69), Expect = 0.58
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Frame = +1
Query: 544 RCRDGTCISFDGKCDGVVDCPDSSDETH-----ALCGKTTCQSNWFRCT 675
+C +G CI CD DC D+SDE A C T NW + T
Sbjct: 3210 KCTNGGCIQKSKLCDFTDDCGDNSDEGRCALYPARCNFETDLCNWQQLT 3258
Score = 31.9 bits (69), Expect = 0.58
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 340 TNPYDSSCSYNEFEC-GDGGCVSIDRVCNGIEDCSGAEDETVC 465
T ++C+ +F C DG C+ + VC+ DC DE C
Sbjct: 3418 TTAAPNNCNAQQFGCVTDGKCIPLTSVCDFNVDCLDGSDERSC 3460
Score = 31.9 bits (69), Expect = 0.58
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = +1
Query: 355 SSCSYNEFEC---GDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKF 486
S+CS EF C G C+ +VC+ ++C DE C + F
Sbjct: 3845 STCSSAEFNCVAEGPNACILSTQVCDFSKNCKDGSDEKNCVQPSCDF 3891
Score = 31.5 bits (68), Expect = 0.76
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 649 CQSNWFRCTYGACVDGTAPCNGIXECADNSDE 744
C FRCT G+C+ + C+ +C+D DE
Sbjct: 2246 CPFGLFRCTDGSCIMQSLRCDYQNDCSDGLDE 2277
Score = 31.5 bits (68), Expect = 0.76
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Frame = +1
Query: 517 TSNCKKSEWRCRDGTCISFDGKCDGVVDC--PDSSDETHALCGKTTCQSNWFRCTY 678
T C E++C G CI CD DC D SDE+ T C C +
Sbjct: 4056 TRPCNTDEFKCSRGGCIPKSYLCDYQADCMFNDLSDESKCDAYTTKCDFEHGLCLF 4111
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +1
Query: 649 CQSNWFRC-TYGACVDGTAPCNGIXECADNSDE 744
C + F C T G C+ T+ C+ +C D SDE
Sbjct: 3425 CNAQQFGCVTDGKCIPLTSVCDFNVDCLDGSDE 3457
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Frame = +1
Query: 643 TTCQSNWFRCTY---GACVDGTAPCNGIXECADNSDE 744
+TC S F C AC+ T C+ C D SDE
Sbjct: 3845 STCSSAEFNCVAEGPNACILSTQVCDFSKNCKDGSDE 3881
>SB_45605| Best HMM Match : MAM (HMM E-Value=2.1e-16)
Length = 187
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 340 TNPYDSSCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVC 465
T P SSC +++ C + CV D++CN +DC DE C
Sbjct: 138 TRPTASSCLASQYVCANSKCVDRDQLCNFKDDCGDNSDELPC 179
Score = 37.5 bits (83), Expect = 0.012
Identities = 21/56 (37%), Positives = 30/56 (53%)
Frame = +1
Query: 484 FGLHSSRRRRQTSNCKKSEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTC 651
FG H+ R S+C S++ C + C+ D C+ DC D+SDE CG T+C
Sbjct: 134 FGFHT---RPTASSCLASQYVCANSKCVDRDQLCNFKDDCGDNSDELP--CG-TSC 183
Score = 35.1 bits (77), Expect = 0.062
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 643 TTCQSNWFRCTYGACVDGTAPCNGIXECADNSDEL 747
++C ++ + C CVD CN +C DNSDEL
Sbjct: 143 SSCLASQYVCANSKCVDRDQLCNFKDDCGDNSDEL 177
>SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 489
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 496 SSRRRRQTSNCKKSEW-RCRDGTCISFDGKCDGVVDCPDSSDET 624
++ + + + CK S W +CR G CI CDG DC D SDE+
Sbjct: 348 NTTQEERDAPCKISSWFKCRSGVCIPPQWICDGKDDCGDRSDES 391
Score = 37.9 bits (84), Expect = 0.009
Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 2/118 (1%)
Frame = +1
Query: 397 CVSIDRVCNGIEDCSGAEDETVCYEI--PAKFGLHSSRRRRQTSNCKKSEWRCRDGTCIS 570
C+ I C+G +C+ DE C + P + + + R KK + +
Sbjct: 285 CIDISYKCDGKPECADHSDENDCPPLINPDRCNVIHIYQPRN----KKHPFVWKLSRKCG 340
Query: 571 FDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACVDGTAPCNGIXECADNSDE 744
+ +C + +E A C S+WF+C G C+ C+G +C D SDE
Sbjct: 341 YTNRCT----LNTTQEERDAPCKI----SSWFKCRSGVCIPPQWICDGKDDCGDRSDE 390
Score = 33.1 bits (72), Expect = 0.25
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Frame = +1
Query: 646 TCQSNW-FRCT----YGACVDGTAPCNGIXECADNSDE 744
TC W F C + C+D + C+G ECAD+SDE
Sbjct: 267 TCHPTWQFTCNNNHWWKQCIDISYKCDGKPECADHSDE 304
Score = 31.9 bits (69), Expect = 0.58
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 352 DSSCSYNE-FECGDGGCVSIDRVCNGIEDCSGAEDET 459
D+ C + F+C G C+ +C+G +DC DE+
Sbjct: 355 DAPCKISSWFKCRSGVCIPPQWICDGKDDCGDRSDES 391
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 526 CKKSEWRCRDGTCISFDGKCDGVVDCPDSSDE 621
C + W + CI KCDG +C D SDE
Sbjct: 276 CNNNHWWKQ---CIDISYKCDGKPECADHSDE 304
>SB_21487| Best HMM Match : MAM (HMM E-Value=0)
Length = 874
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +1
Query: 523 NCKKSEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCG 639
+C ++CR G CIS D CD DC D SDE + CG
Sbjct: 703 SCTPESYKCRSGECISLDLLCDFNKDCLDGSDEEN--CG 739
Score = 37.1 bits (82), Expect = 0.015
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 358 SCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVC 465
SC+ ++C G C+S+D +C+ +DC DE C
Sbjct: 703 SCTPESYKCRSGECISLDLLCDFNKDCLDGSDEENC 738
Score = 27.9 bits (59), Expect = 9.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 397 CVSIDRVCNGIEDCSGAEDETVC 465
C+S ++C+ ++DC DET C
Sbjct: 497 CISHGQLCDFVDDCGDGWDETGC 519
>SB_52309| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 386
Score = 38.3 bits (85), Expect = 0.007
Identities = 35/161 (21%), Positives = 61/161 (37%), Gaps = 3/161 (1%)
Frame = +1
Query: 262 ELRFNKIMYLYLSVILFVTSSVLTKITNPYDSSCSYNEFECGDGG--CVSIDRVCNGIED 435
+LR ++ + + ++LF+ + K+ +PY + S + C D CV+ + C+
Sbjct: 13 KLRVTAVVSVVIVIVLFIAAIPWRKVHDPYSNRFSGHGKNCTDANDECVTGNHTCDKNAR 72
Query: 436 CSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKSEWRCRDGTCISFDGKCDGVVDCPDSS 615
C+ C P G R NC + C++ + CD C ++
Sbjct: 73 CNNTIGSYHCTCNP---GFSGDGR-----NCTDID------ECVTGNHTCDKNAKCNNTI 118
Query: 616 DETHALCGKTTCQSNWFRCT-YGACVDGTAPCNGIXECADN 735
H +C N CT CV G C+ C +N
Sbjct: 119 GSYHCMC-NPGFSGNGRNCTDIDECVTGNHACDKNARCRNN 158
>SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 37.9 bits (84), Expect = 0.009
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 646 TCQSNWFRCTYGACVDGTAPCNGIXECADNSDE 744
TC++ FRC G C+ G C+ +C D SDE
Sbjct: 4 TCKAGDFRCANGRCISGALVCDLDDDCGDESDE 36
Score = 36.3 bits (80), Expect = 0.027
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +1
Query: 526 CKKSEWRCRDGTCISFDGKCDGVVDCPDSSDE 621
CK ++RC +G CIS CD DC D SDE
Sbjct: 5 CKAGDFRCANGRCISGALVCDLDDDCGDESDE 36
Score = 34.7 bits (76), Expect = 0.082
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 358 SCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVC 465
+C +F C +G C+S VC+ +DC DE C
Sbjct: 4 TCKAGDFRCANGRCISGALVCDLDDDCGDESDERGC 39
>SB_17568| Best HMM Match : Ldl_recept_a (HMM E-Value=0.04)
Length = 189
Score = 37.5 bits (83), Expect = 0.012
Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Frame = +1
Query: 538 EWRCRDGTC-ISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACVDGTAPCN- 711
++ C DG+ I F D DC D SDE G C + F CT P +
Sbjct: 45 DFTCLDGSLTIPFSSVNDDYCDCNDGSDEP----GTAACPNGQFHCTNAGYRPKNYPSSR 100
Query: 712 ---GIXECADNSDE 744
GI +C D SDE
Sbjct: 101 VNDGICDCCDGSDE 114
Score = 35.5 bits (78), Expect = 0.047
Identities = 30/96 (31%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Frame = +1
Query: 349 YDSSCSYNEFECGDGGC-VSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSN 525
YDSS +F C DG + V + DC+ DE P H + + N
Sbjct: 40 YDSS---KDFTCLDGSLTIPFSSVNDDYCDCNDGSDEPGTAACP-NGQFHCTNAGYRPKN 95
Query: 526 CKKSEWRCRDGTCISFDG--KCDGVVDCPDSSDETH 627
S R DG C DG + DG V+CPD+ E +
Sbjct: 96 YPSS--RVNDGICDCCDGSDEYDGKVNCPDTCKELY 129
>SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)
Length = 652
Score = 35.1 bits (77), Expect = 0.062
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +1
Query: 526 CKKSEWRCRD-GTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACVDGTA 702
C E++C+ G CI CDG DC D DE C C+ + C+ C D T
Sbjct: 211 CMPGEFKCQSTGRCIPESKVCDGTRDCQDGEDEP-LRCNIDECKDHNGHCSQ-KCNDLTL 268
Query: 703 PCN 711
N
Sbjct: 269 GYN 271
Score = 35.1 bits (77), Expect = 0.062
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +1
Query: 361 CSYNEFEC-GDGGCVSIDRVCNGIEDCSGAEDE 456
C EF+C G C+ +VC+G DC EDE
Sbjct: 211 CMPGEFKCQSTGRCIPESKVCDGTRDCQDGEDE 243
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +1
Query: 649 CQSNWFRC-TYGACVDGTAPCNGIXECADNSDELL 750
C F+C + G C+ + C+G +C D DE L
Sbjct: 211 CMPGEFKCQSTGRCIPESKVCDGTRDCQDGEDEPL 245
>SB_16748| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 280
Score = 35.1 bits (77), Expect = 0.062
Identities = 37/132 (28%), Positives = 49/132 (37%), Gaps = 6/132 (4%)
Frame = +1
Query: 358 SCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKS 537
+C F C +GG ID C +C E + + Q+S CK S
Sbjct: 127 ACKDGSFTCSNGGTCEID--------CKTLVPRCLCPEGFSGDKCENHDNECQSSPCKNS 178
Query: 538 EWRCRDG----TCISFDGKCDG--VVDCPDSSDETHALCGKTTCQSNWFRCTYGACVDGT 699
C+D TC G D D + + + A G T N F CT A +G+
Sbjct: 179 G-TCKDEDNGYTCACVPGFTDKNCETDINECAGDPCANGGTCTDGINGFTCTCPAGYNGS 237
Query: 700 APCNGIXECADN 735
N I ECA N
Sbjct: 238 TCDNDIDECASN 249
>SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2250
Score = 34.7 bits (76), Expect = 0.082
Identities = 38/154 (24%), Positives = 58/154 (37%), Gaps = 5/154 (3%)
Frame = +1
Query: 280 IMYLYLSVILFVTSSVLTKITNPYDSSCSYNEFECG--DGGCVSIDRVCNGIE-DCSGAE 450
IM L +I++ + + D C + EC D C+ IDR C GI+ +C G +
Sbjct: 1503 IMALLSGMIMWALCLGIDRECRGIDRECRGIDRECLCIDRECLGIDRECLGIDRECLGID 1562
Query: 451 DETVCYEIPAKFGLHSSRRRRQTSNCKKSEWRCRDGTCISFDGKCDGV-VDCPDSSDETH 627
E ++ + SR + S E R D C D +C G+ +C E
Sbjct: 1563 RECRDFDRECRHFDRESRDIDRESRGIDRECRGIDRECPGIDRECLGINRECLGIDRECR 1622
Query: 628 ALCGKTTCQSNWFRCTYGACVDGTAPCNGI-XEC 726
+ + C C+ C GI EC
Sbjct: 1623 GIDRECRGIDRECLCIDRECLGIDRECRGIDREC 1656
Score = 31.5 bits (68), Expect = 0.76
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Frame = +1
Query: 382 CGDGGCVSIDRVCNGIE-DCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKSEWRCR-- 552
C D C+ IDR C GI+ +C G E C I + R C + CR
Sbjct: 1637 CIDRECLGIDRECRGIDRECRGIYRE--CRGIDRECLCIDRECRGIDRECLGIDRECRGI 1694
Query: 553 DGTCISFDGKCDGV 594
D C D +C G+
Sbjct: 1695 DRECRGIDRECRGI 1708
Score = 29.5 bits (63), Expect = 3.1
Identities = 36/134 (26%), Positives = 55/134 (41%), Gaps = 8/134 (5%)
Frame = +1
Query: 367 YNEFECGDGGCVSIDRVCNGIE-DCSGAEDE-----TVCYEIPAKF-GLH-SSRRRRQTS 522
Y E D C+ IDR C GI+ +C G + E C I + G++ R +
Sbjct: 1660 YRECRGIDRECLCIDRECRGIDRECLGIDRECRGIDRECRGIDRECRGIYRECRGIDREC 1719
Query: 523 NCKKSEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACVDGTA 702
C E R D C S D +C + D ++ DE K + + W+ A V T
Sbjct: 1720 LCIDRECRGIDRECRSIDRECRCIDDTWNNPDEFPRSFIKGSGEGFWW-----AFVTMTT 1774
Query: 703 PCNGIXECADNSDE 744
+ + DN+D+
Sbjct: 1775 VGDSVVRHDDNNDD 1788
>SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)
Length = 1571
Score = 34.3 bits (75), Expect = 0.11
Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +1
Query: 361 CSYNEFECG-DGGCVSIDRVCNGIEDCSGAEDETVC 465
C EF CG G CV CNG DC A DE C
Sbjct: 726 CGNGEFYCGVPGECVPQTLRCNGQMDCRDASDEQDC 761
Score = 31.9 bits (69), Expect = 0.58
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Frame = +1
Query: 316 TSSVLTKITNPYDSSCSYNEFECGDG-----GCVSIDRVCNGIEDCS 441
T + LT T S C F CG G C++ CNGI DCS
Sbjct: 1515 TPTTLTMTTGVLKSLCPSGYFYCGTGPKGEISCITKALRCNGIYDCS 1561
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 526 CKKSEWRCR-DGTCISFDGKCDGVVDCPDSSDETHALCGKTT 648
C E+ C G C+ +C+G +DC D+SDE CG T
Sbjct: 726 CGNGEFYCGVPGECVPQTLRCNGQMDCRDASDEQD--CGIPT 765
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +1
Query: 649 CQSNWFRCTY-GACVDGTAPCNGIXECADNSDE 744
C + F C G CV T CNG +C D SDE
Sbjct: 726 CGNGEFYCGVPGECVPQTLRCNGQMDCRDASDE 758
>SB_43556| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-11)
Length = 65
Score = 34.3 bits (75), Expect = 0.11
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 664 FRCTYGACVDGTAPCNGIXECADNSDEL 747
F+C G C+ T C+ +C DNSDE+
Sbjct: 12 FKCDNGRCISATWVCDTENDCGDNSDEM 39
Score = 33.5 bits (73), Expect = 0.19
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +1
Query: 535 SEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWF 666
+ ++C +G CIS CD DC D+SDE + C K +++++
Sbjct: 10 TSFKCDNGRCISATWVCDTENDCGDNSDEMN--CSKYDNKNHYY 51
Score = 31.5 bits (68), Expect = 0.76
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 376 FECGDGGCVSIDRVCNGIEDCSGAEDETVC 465
F+C +G C+S VC+ DC DE C
Sbjct: 12 FKCDNGRCISATWVCDTENDCGDNSDEMNC 41
>SB_22527| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1048
Score = 33.1 bits (72), Expect = 0.25
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +1
Query: 316 TSSVLTKITNPYDSSCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYE 471
T+ V T P D+ C Y++ + D GC S D NG D +++ CY+
Sbjct: 340 TNFVTESFTAPDDNGC-YDDDDDNDNGCYSDDDNDNGCYDDDDDDNDNGCYD 390
>SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 921
Score = 32.7 bits (71), Expect = 0.33
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 523 NCKKSEWRCRDGTCISFDGKCDGVVDCPDSSDE 621
NC +++RC +G CI + +CD + C + E
Sbjct: 205 NCLSNQFRCNNGKCIDYRWRCDKQLRCDNGRCE 237
Score = 31.5 bits (68), Expect = 0.76
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Frame = +1
Query: 523 NCKKSEWRCRDGTCISFDGKCDGVVD------CPDSSDETHALCGKTTCQSN 660
NC +++RC +G CI + +CD V D S++ L G C S+
Sbjct: 17 NCLSNQFRCNNGKCIDYRWRCDKQVSLQVMYHVDDGSNDITKLKGFIMCNSS 68
Score = 31.5 bits (68), Expect = 0.76
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +1
Query: 526 CKKSEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRC 672
C K + RC +G C CDG DC D SDE + +N C
Sbjct: 225 CDK-QLRCDNGRCEDKRWWCDGQDDCNDGSDEKNCSASANPTPTNAQGC 272
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 649 CQSNWFRCTYGACVDGTAPCNGIXECADN 735
C SN FRC G C+D C+ C DN
Sbjct: 206 CLSNQFRCNNGKCIDYRWRCDKQLRC-DN 233
>SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71)
Length = 1139
Score = 32.3 bits (70), Expect = 0.44
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = -1
Query: 620 SSLESGQSTTPSHLPSNEMHVPSRQRHSDFLQLEVCLRRLELCNPNFAGIS*QTVSSSAP 441
SS+ES S L SN + PSR S ++ + L +E+CN + G + +S +P
Sbjct: 695 SSVESPNINEHSKLASN-LSTPSRSSCSKLIRSQASLSAMEVCNSSDIGSTPTILSDKSP 753
Query: 440 EQ 435
Q
Sbjct: 754 VQ 755
>SB_20112| Best HMM Match : EGF (HMM E-Value=0)
Length = 2112
Score = 31.9 bits (69), Expect = 0.58
Identities = 28/114 (24%), Positives = 42/114 (36%), Gaps = 1/114 (0%)
Frame = +1
Query: 358 SCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKS 537
SC N EC C+++ +GI + G +R + C+ S
Sbjct: 409 SCETNTNECAGNPCMNMGTCIDGINS----------FRCQCPLGFTGNRCETEIDECESS 458
Query: 538 EWRCRDGTCISFDGKCDG-VVDCPDSSDETHALCGKTTCQSNWFRCTYGACVDG 696
+ GTC K +G V CP + TH C +N + G C+DG
Sbjct: 459 PCQ-NGGTC---KDKINGYVCICPPGASGTHCENDPNDCPANACQ-NGGVCIDG 507
>SB_26157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1097
Score = 31.5 bits (68), Expect = 0.76
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Frame = +1
Query: 379 ECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKSE--WRCR 552
+CG+ G + + NG DC GAE C P+K + + R T C E + C
Sbjct: 228 DCGEHGSLLL---ANG--DCEGAESFHSCQSSPSKAEI---QHRHSTCGCAHGESGYGCE 279
Query: 553 DGTCISFDGKCDGVVDCPDSSDETHA 630
+G C + K V + D+ D+T A
Sbjct: 280 NGQC---ESKGSSVPE--DNEDKTEA 300
>SB_25060| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 31.5 bits (68), Expect = 0.76
Identities = 36/141 (25%), Positives = 49/141 (34%), Gaps = 14/141 (9%)
Frame = +1
Query: 358 SCSYNEFECGDGG--CVSIDRVC-NGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNC 528
+C + C D C C + C G D CY+ F S R + C
Sbjct: 195 TCGDDSHACFDDSHACFDDSHACFDDSHACFG--DSHACYDDSHAFYDDSHARFDDSHAC 252
Query: 529 KKSEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKT-TCQSNWFRC------TYG-- 681
C D + FD G D D++HA G + C ++ C YG
Sbjct: 253 FDDSNACYDDSHACFDDSHAGFDDSHACFDDSHACYGDSHACFDDYHACFDDSHACYGDS 312
Query: 682 -ACVDGTAPC-NGIXECADNS 738
AC D + C + C DNS
Sbjct: 313 HACYDASHACYDDSYACYDNS 333
>SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 31.5 bits (68), Expect = 0.76
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 649 CQSNWFRCTYGACVDGTAPCNGIXECADNSDEL 747
C F C C+D CN +C D SDE+
Sbjct: 392 CGPKKFTCQNRQCIDDFKQCNNRQDCRDGSDEI 424
Score = 31.1 bits (67), Expect = 1.0
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +1
Query: 352 DSSCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVC 465
+ C +F C + C+ + CN +DC DE C
Sbjct: 389 EGPCGPKKFTCQNRQCIDDFKQCNNRQDCRDGSDEISC 426
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 526 CKKSEWRCRDGTCISFDGKCDGVVDCPDSSDE 621
C ++ C++ CI +C+ DC D SDE
Sbjct: 392 CGPKKFTCQNRQCIDDFKQCNNRQDCRDGSDE 423
>SB_17635| Best HMM Match : CUB (HMM E-Value=0)
Length = 630
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = +1
Query: 541 WRCRDGTCISFDGKCDGVVDCPDSSDET----HALCGKTTCQSNW 663
++C + I KCDG DC D SDE H + KT+ N+
Sbjct: 422 FKCDNDNYIQCQWKCDGTDDCGDHSDEDNCVGHVIAPKTSKLRNY 466
>SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38)
Length = 839
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Frame = +1
Query: 562 CISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCT-YGACVDGTAPCNGIXEC 726
C+ KCD + C D+ C K + N F C C +G C+G C
Sbjct: 720 CLLGSSKCDRMAKCIDTLSGFKCECNK-GFEGNGFNCADINECDNGKNDCHGNARC 774
>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5222
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +1
Query: 568 SFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACVDGTAPCNG 714
S G C+ CP+ +D+ C+S++ G CV G CNG
Sbjct: 1228 SIGGYCNKGTFCPEGADQPRPCTPGYYCESDYLSTESGLCVAGYY-CNG 1275
>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
Length = 3094
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Frame = +1
Query: 562 CISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCT-YGACVDGTAPCNGIXEC 726
C+ KCD + C D+ C K + N F C C +G C+G C
Sbjct: 2975 CLLGSSKCDRMAKCIDTLSGFKCECNK-GFEGNGFNCADINECDNGKNDCHGNARC 3029
>SB_3108| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 631
Score = 30.3 bits (65), Expect = 1.8
Identities = 31/128 (24%), Positives = 44/128 (34%), Gaps = 3/128 (2%)
Frame = +1
Query: 361 CSYNEFECGDG-GCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKS 537
C N GDG C ID G C + C + H + + N ++
Sbjct: 509 CMCNPGFSGDGRNCTDIDECVTGDHTC---DKNAKCDNTIGSY--HCTCNPGFSGNGRE- 562
Query: 538 EWRCRD-GTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCT-YGACVDGTAPCN 711
C D C++ D CD C ++ H C N CT CV G C+
Sbjct: 563 ---CTDTDECVTGDHTCDKNARCGNTIGSYHCTC-NPGFSGNGRECTDIDECVTGDHTCD 618
Query: 712 GIXECADN 735
+C +N
Sbjct: 619 KNAKCRNN 626
>SB_33807| Best HMM Match : RNA_pol (HMM E-Value=2.7e-10)
Length = 469
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/55 (27%), Positives = 22/55 (40%)
Frame = +1
Query: 289 LYLSVILFVTSSVLTKITNPYDSSCSYNEFECGDGGCVSIDRVCNGIEDCSGAED 453
+Y V V + L D SC E +C D + + C+G + C ED
Sbjct: 382 VYAEVAKLVEEARLHDAEQDGDDSCDVGE-DCDDDDSCDVGKDCDGYDSCDVGED 435
>SB_8580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 426
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Frame = +1
Query: 517 TSNCKKSEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSN-WFRCTYGACVD 693
T CK + + TC D GV +CP S+D + G TC+ + C+D
Sbjct: 229 TCKCKPG-YTLVNNTCEDIDECALGVANCPASADCVNN-NGSYTCRCKPGYTLVNNTCID 286
Query: 694 GTAPCNGIXECADNSD 741
G+ C ++D
Sbjct: 287 TDECALGVATCPASAD 302
Score = 28.3 bits (60), Expect = 7.1
Identities = 26/72 (36%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +1
Query: 517 TSNCKKSEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYG-ACVD 693
T CK + + TCI D GV CP S+D + G TC RC G V+
Sbjct: 270 TCRCKPG-YTLVNNTCIDTDECALGVATCPASADCVNN-DGSYTC-----RCKRGYTLVN 322
Query: 694 GTAPCNGIXECA 729
T C I ECA
Sbjct: 323 KT--CKDIDECA 332
>SB_47176| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 471
Score = 29.1 bits (62), Expect = 4.1
Identities = 31/127 (24%), Positives = 43/127 (33%), Gaps = 3/127 (2%)
Frame = +1
Query: 361 CSYNEFECGDGG-CVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKS 537
C+ N GDG C ID G C + C I + H + N ++
Sbjct: 250 CTCNPGFSGDGRECTDIDECVTGDHTC---DKNAKCNNIIGSY--HCMCNPGFSGNGRE- 303
Query: 538 EWRCRD-GTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCT-YGACVDGTAPCN 711
C D C++ D CD C ++ H C N CT CV G C+
Sbjct: 304 ---CTDIDECVTGDHTCDKNARCGNTIGSYHCTC-NPGFSGNGRECTDTDECVTGDHTCD 359
Query: 712 GIXECAD 732
C +
Sbjct: 360 KNARCGN 366
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Frame = +1
Query: 547 CRD-GTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCT-YGACVDGTAPCNGIX 720
C D C++ D CD C ++ H C N CT CV G C+
Sbjct: 345 CTDTDECVTGDHTCDKNARCGNTIGSYHCTC-NPGFSGNGRECTDIDECVTGDYTCDKNA 403
Query: 721 ECADN 735
+C +N
Sbjct: 404 KCRNN 408
>SB_45915| Best HMM Match : CRAM_rpt (HMM E-Value=9.1e-20)
Length = 359
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +1
Query: 580 KCDGVVDCPDSSD-ETHALCGKTT-CQSNWFRCTYGACVDGTAPCNGIXECADNSD 741
+C+ +C + + E+ CG TT C+S C + + T C EC ++
Sbjct: 53 ECESTRECESTRECESTRECGSTTKCESTKEECESTSECESTRECESTSECESTTE 108
>SB_37309| Best HMM Match : Toxin_29 (HMM E-Value=1.2)
Length = 754
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/56 (33%), Positives = 24/56 (42%)
Frame = +1
Query: 574 DGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACVDGTAPCNGIXECADNSD 741
D C GVVDC D D+ CG C + C C D C G+ +C + D
Sbjct: 576 DDDCCGVVDC-DVDDD---CCGVVDCDVDDDCCGVVDC-DVDDDCYGVVDCGVDDD 626
>SB_34218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 607
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +1
Query: 526 CKKSEWRCRDGTCISFDGKCDGVVDCPDSSDETHA 630
C W DG C D CD VD D+ D+ A
Sbjct: 557 CDIDNWYDDDGVCNDNDDACDDNVDDDDACDDDDA 591
>SB_49500| Best HMM Match : Collagen (HMM E-Value=1.8e-07)
Length = 621
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Frame = +1
Query: 409 DRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTS---NCKKSEW---RCRDGTCIS 570
D +CN I DC CY+ +K + S+ RR+++ C + C + T
Sbjct: 177 DVICNEIGDC--------CYDYRSKCNITSTAPRRESTPKRQCSNGYYIARTCPENTDRY 228
Query: 571 FDGKCDGVVDCPDSSD 618
DG+C + P ++D
Sbjct: 229 LDGQCTADGETPSTND 244
>SB_3253| Best HMM Match : Ldl_recept_a (HMM E-Value=0.00064)
Length = 48
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Frame = +1
Query: 640 KTTCQSNWFRCTYG-----ACVDGTAPCNGIXECA 729
K+ C S +F C G +C++ CNGI +C+
Sbjct: 4 KSLCPSGYFYCGTGPKGEISCINKALRCNGIYDCS 38
>SB_52147| Best HMM Match : EGF (HMM E-Value=0)
Length = 364
Score = 28.3 bits (60), Expect = 7.1
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +1
Query: 547 CRDGTCISFDGK--CDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACV-DGTA 702
C DGTCI G C+ + S +T CQSN C +G C+ DG++
Sbjct: 179 CNDGTCIQQTGSFYCECLTGYTGQSCDTMI----DACQSN--PCVHGTCIPDGSS 227
>SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 1120
Score = 28.3 bits (60), Expect = 7.1
Identities = 33/129 (25%), Positives = 41/129 (31%), Gaps = 3/129 (2%)
Frame = +1
Query: 358 SCSYNEFECG-DGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKK 534
SCS + +C DG C D+ CN C V E K G RR C
Sbjct: 529 SCSDAQTKCQYDGDCAGADKCCN--TQCGKICTSAVLKE---KTGFCPKRRVDHVGVC-- 581
Query: 535 SEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNW--FRCTYGACVDGTAPC 708
+ DG C D KC C + T + C C C + P
Sbjct: 582 VNYCGTDGDCAG-DKKC-----CSNGCGRTCTSPVRQACPEGQPVVMCLRDPCESASCPA 635
Query: 709 NGIXECADN 735
N + C N
Sbjct: 636 NPMATCRPN 644
>SB_33203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 211
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 355 SSCSYNEFECGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFG 489
++C+ F GG V + V NG++DC D + Y++ +FG
Sbjct: 154 ANCNQEGFN--SGGRVRVGFVSNGLDDCESI-DSMLYYDMRKRFG 195
>SB_5020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 687
Score = 28.3 bits (60), Expect = 7.1
Identities = 32/125 (25%), Positives = 42/125 (33%), Gaps = 3/125 (2%)
Frame = +1
Query: 361 CSYNEFECGDG-GCVSIDRVCNGIEDCSGAEDETVCYEIPAKFGLHSSRRRRQTSNCKKS 537
C N GDG C ID G C + C I G H S K+
Sbjct: 218 CMCNPGFSGDGRNCTDIDECVTGDHTC---DKNARCGNI---IGSHHCICNPGFSGDGKN 271
Query: 538 EWRCRD-GTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCT-YGACVDGTAPCN 711
C D C++ D CD C ++ H +C + CT CV G C+
Sbjct: 272 ---CTDIDECVTGDHTCDKNAKCNNTIGSHHCMC-NPGFSGDGRECTDIDECVTGDHTCD 327
Query: 712 GIXEC 726
+C
Sbjct: 328 KNAKC 332
>SB_59209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1002
Score = 27.9 bits (59), Expect = 9.4
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Frame = +1
Query: 352 DSSCSYNEFECGDGGCVSIDRVCNGIEDC-SGAEDETVCYEIPAKFG--LHSSRRR-RQT 519
+ SC + G +S D++C G+ C +G + C IPAK H + +
Sbjct: 796 EKSCRFGGRILRHGFSLS-DQLCTGVVKCVNGNLKMSYCPGIPAKPTNCAHPELKIIARP 854
Query: 520 SNCKKSEWRCRDGTC 564
C K +W C D +C
Sbjct: 855 GKCCKKKWVCADKSC 869
>SB_33921| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 549
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -1
Query: 590 PSHLPSNEMHVPSRQRHSDFLQLEVCLRRLELCNPNF 480
PS EMHVP + + Q L RLE C N+
Sbjct: 381 PSPDTPKEMHVPLAENKDNRRQSSCVLTRLERCGENY 417
>SB_30354| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = -1
Query: 527 QLEVCLRRLELCNPNFAGIS*QTVSSSAPEQSSMPLQTLSMLTQPPSPH 381
+L L L +F G S V+ S P QS ++L +L QP S H
Sbjct: 484 ELRTLCGSLSLRCGSFGGFSRLGVTPSLPHQSRRSFESLPLLQQPNSWH 532
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,851,054
Number of Sequences: 59808
Number of extensions: 421814
Number of successful extensions: 1770
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1585
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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