Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_G24
         (755 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05170.1 68414.m00520 galactosyltransferase family protein          32   0.36 
At2g32430.1 68415.m03962 galactosyltransferase family protein co...    32   0.47 
At4g26940.1 68417.m03876 galactosyltransferase family protein co...    31   0.62 
At1g45180.1 68414.m05180 zinc finger (C3HC4-type RING finger) fa...    31   0.62 
At5g56360.1 68418.m07034 calmodulin-binding protein similar to a...    31   0.83 
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein...    29   2.5  
At3g11440.1 68416.m01395 myb family transcription factor (MYB65)...    29   4.4  
At1g28260.2 68414.m03469 expressed protein                             28   5.8  
At1g28260.1 68414.m03468 expressed protein                             28   5.8  
At1g32930.1 68414.m04056 galactosyltransferase family protein co...    28   7.7  

>At1g05170.1 68414.m00520 galactosyltransferase family protein
          Length = 404

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
 Frame = +1

Query: 493 HSSRRRRQTSNCKKSEWRCRDGT-CI-SFDGKCDGVVDCPDSSDETHALCGK 642
           H   RR         EW+ + G  C+ SFD  C G+    D   E H  CG+
Sbjct: 343 HIDDRRLCCGTPPDCEWKAQAGNICVASFDWSCSGICRSADRIKEVHRRCGE 394


>At2g32430.1 68415.m03962 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 409

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
 Frame = +1

Query: 493 HSSRRRRQTSNCKKSEWRCRDGT-CI-SFDGKCDGVVDCPDSSDETHALCGK 642
           H   RR         EW+ + G  C+ SFD  C G+    D   E H  CG+
Sbjct: 348 HIDDRRLCCGTPPDCEWKAQAGNICVASFDWTCSGICRSADRIKEVHKRCGE 399


>At4g26940.1 68417.m03876 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 407

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +1

Query: 508 RRQTSNCKKSEWRCRDGT-CI-SFDGKCDGVVDCPDSSDETHALCGK 642
           RR        EW+ + G  C+ SFD  C G+    D   + H  CG+
Sbjct: 351 RRLCCGTTDCEWKAQAGNICVASFDWSCSGICRSADRMKDVHRRCGE 397


>At1g45180.1 68414.m05180 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 645

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 32/104 (30%), Positives = 50/104 (48%)
 Frame = -1

Query: 695 PSTHAPYVQRNQLLWHVVFPQSAWVSSLESGQSTTPSHLPSNEMHVPSRQRHSDFLQLEV 516
           P+TH P V RN   W+   P +A +SS     S TP  +  N +H  + ++ S+ L++ +
Sbjct: 307 PATHMPPVSRNTFQWN-TSPVAAVISS----SSATP--VDRNVIHRNATRQRSNTLEIPL 359

Query: 515 CLRRLELCNPNFAGIS*QTVSSSAPEQSSMPLQTLSMLTQPPSP 384
            +   EL N     IS    +S A   +S   +T S+   P SP
Sbjct: 360 FVPAPELRNVAHGHIS--RNASGARHVASSSSRT-SVQPSPSSP 400


>At5g56360.1 68418.m07034 calmodulin-binding protein similar to
           alpha glucosidase II beta subunit from GI:2104691 [Mus
           musculus]
          Length = 647

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
 Frame = +1

Query: 535 SEWRCRDGTCISFDGKC-DGVVDCPDSSDETHALCGKTTCQSNWFRCT---YGACVDGTA 702
           SE +C+DG+      +  D   DC D +DE     G + C +  F C    +   +  ++
Sbjct: 52  SEIKCKDGSKKFTKAQLNDDFCDCSDGTDEP----GTSACPTGKFYCRNAGHSPVILFSS 107

Query: 703 PCN-GIXECADNSDE 744
             N GI +C D SDE
Sbjct: 108 RVNDGICDCCDGSDE 122



 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
 Frame = +1

Query: 517 TSNCKKSEWRCRDG---TCISFDGKC-DGVVDCPDSSDE--THALCGKTTC 651
           TS C   ++ CR+      I F  +  DG+ DC D SDE   H  C + TC
Sbjct: 84  TSACPTGKFYCRNAGHSPVILFSSRVNDGICDCCDGSDEYDGHVSC-QNTC 133


>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
           contains PF01422: NF-X1 type zinc finger
          Length = 912

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 31/129 (24%), Positives = 44/129 (34%), Gaps = 14/129 (10%)
 Frame = +1

Query: 382 CGDGGCVSIDRVCNGIEDCSGAEDETVCYEIPAKFG----------LHSSRRRRQTSNC- 528
           C  G C S  ++      C G ED   C       G          +H+ R       C 
Sbjct: 206 CHPGPCASCPKLVKAKCFCGGVEDVRRCGHKQFSCGDVCERVLDCNIHNCREICHDGECP 265

Query: 529 ---KKSEWRCRDGTCISFDGKCDGVVDCPDSSDETHALCGKTTCQSNWFRCTYGACVDGT 699
              +++ ++C  G        C+ V  C ++S E    CGK  C+     C  G C  G 
Sbjct: 266 PCRERAVYKCSCGKVKEEKDCCERVFRC-EASCENMLNCGKHVCERG---CHAGEC--GL 319

Query: 700 APCNGIXEC 726
            P  G   C
Sbjct: 320 CPYQGKRSC 328


>At3g11440.1 68416.m01395 myb family transcription factor (MYB65)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 553

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -1

Query: 674 VQRNQLLWHVVFPQSAWVSSLESGQSTTPSHLPSNEMHVPSRQRHSDFLQL 522
           ++R Q     ++P   +V  L   +  T S++    + V  R+RH DFLQL
Sbjct: 141 IKRRQRAGLPLYPPEIYVDDLHWSEEYTKSNI----IRVDRRRRHQDFLQL 187


>At1g28260.2 68414.m03469 expressed protein
          Length = 880

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 23/69 (33%), Positives = 34/69 (49%)
 Frame = -1

Query: 614 LESGQSTTPSHLPSNEMHVPSRQRHSDFLQLEVCLRRLELCNPNFAGIS*QTVSSSAPEQ 435
           LE+ +S   S  P N++ V +     + L L  C+R L +  P F G S   +      +
Sbjct: 169 LEAAKSWPDSGNPHNQLAVLATYVSDELLALYHCVRSLAVKEP-FPGASNNLLLLFEKNR 227

Query: 434 SSMPLQTLS 408
           SS PLQ+LS
Sbjct: 228 SS-PLQSLS 235


>At1g28260.1 68414.m03468 expressed protein
          Length = 880

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 23/69 (33%), Positives = 34/69 (49%)
 Frame = -1

Query: 614 LESGQSTTPSHLPSNEMHVPSRQRHSDFLQLEVCLRRLELCNPNFAGIS*QTVSSSAPEQ 435
           LE+ +S   S  P N++ V +     + L L  C+R L +  P F G S   +      +
Sbjct: 169 LEAAKSWPDSGNPHNQLAVLATYVSDELLALYHCVRSLAVKEP-FPGASNNLLLLFEKNR 227

Query: 434 SSMPLQTLS 408
           SS PLQ+LS
Sbjct: 228 SS-PLQSLS 235


>At1g32930.1 68414.m04056 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 399

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = +1

Query: 538 EWRCRDGT--CISFDGKCDGVVDCPDSSDETHALCGK 642
           EW+ + G     SFD  C G+    D   E H  CG+
Sbjct: 353 EWKGQAGNPCAASFDWSCSGICKSVDRMLEVHQRCGE 389


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,323,312
Number of Sequences: 28952
Number of extensions: 282485
Number of successful extensions: 905
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)