Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_G23
(814 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0269 - 18991203-18991307,18991448-18991525,18992724-189929... 82 4e-16
04_04_0335 - 24491000-24491003,24491636-24491670,24491875-244919... 77 2e-14
07_03_0984 - 23131468-23131679,23132082-23132209,23132300-231323... 74 1e-13
01_06_1675 + 39078774-39078890,39079607-39079723,39079950-390800... 62 7e-10
02_04_0529 + 23697249-23697419,23697610-23697726,23698292-236983... 50 2e-06
02_02_0461 + 10534733-10536302,10536347-10536396,10536845-10538227 28 7.7
>06_03_0269 -
18991203-18991307,18991448-18991525,18992724-18992910,
18993096-18993265,18994228-18994306,18995006-18995220,
18995346-18995429,18995732-18995734
Length = 306
Score = 82.2 bits (194), Expect = 4e-16
Identities = 65/245 (26%), Positives = 114/245 (46%), Gaps = 7/245 (2%)
Frame = +1
Query: 100 GVFVTASKTENGGYDYNTTLVVFLSELLKLIVSAILYTLGRENKPHIFKAIAINXXXXXX 279
G+ T S++ NG Y Y+ + FL+EL KL S+ + L +E + +
Sbjct: 2 GILTTLSQS-NGKYKYDYATIPFLAELFKLSFSS--FFLWKECQSSSPPRMTKEWRSIRL 58
Query: 280 XXXXXXXXCFYNNLAFINLSHYDPTSYYILLQFRVVLTALLFQFLFKKDLTFIQWISLGI 459
+NN+ F L++ DP++Y I+ ++V T +LF+ + K+ L+ +QW+++ +
Sbjct: 59 YLVPSVIYLIHNNVQFATLTYVDPSTYQIMGNLKIVTTGILFRLVLKRKLSNLQWMAVVL 118
Query: 460 LTIGCMIKNFDASTVNSKEDGNAWSQVLNIYFLSINFQNFCSCLAGTFNEYLLKKQGSHV 639
L +G + +S Y L I S LAG + EYL+KK
Sbjct: 119 LAVGTTTS--QVKGCGDAPCDSLFSAPFQGYMLGI-LSACLSALAGVYTEYLMKKNND-- 173
Query: 640 NIFLQNVFMYLDSVLCNXIVLLLKGELGAIFED-------FNSLYDIFVILIIVNSAIXG 798
+++ QNV +Y V+ N + L+ G+ A FE FN Y I +++ N G
Sbjct: 174 SLYWQNVQLYTFGVIFN-MGWLIYGDFKAGFERGPWWQRLFNG-YSITTWMVVFNLGSTG 231
Query: 799 IVTSF 813
++ S+
Sbjct: 232 LLVSW 236
>04_04_0335 -
24491000-24491003,24491636-24491670,24491875-24491923,
24492043-24492119,24492207-24492340,24492471-24492578,
24493145-24493214,24493399-24493476,24493592-24493714,
24494238-24494297,24494424-24494468,24494936-24495013,
24495298-24495354,24495623-24495739,24495856-24496026
Length = 401
Score = 77.0 bits (181), Expect = 2e-14
Identities = 73/270 (27%), Positives = 124/270 (45%), Gaps = 16/270 (5%)
Frame = +1
Query: 52 RVLSFLL----CI*FYLVFQGVFVTASKTENGGYDYNTTLVVFLSELLKLIVSAILYTLG 219
R L+FLL CI + Q + V SK + G + ++ V FL+E+ K+I + ++ +
Sbjct: 40 RALNFLLVSGDCI--LVGLQPILVFMSKVD-GKFQFSPISVNFLTEVTKVIFAIVMLIIQ 96
Query: 220 REN-----KPHIFKAIAINXXXXXXXXXXXXXXCFYNN-LAFINLSHYDPTSYYILLQFR 381
KP + + + NN L FI ++ P + +L +
Sbjct: 97 SRKQKVGEKPLLSLSTFVQAARNNALLAVPALLYAINNYLKFIMQLYFSPATVKMLSNLK 156
Query: 382 VVLTALLFQFLFKKDLTFIQWISLGILTIGCMIKNFDASTVNSKEDGNAWSQVLNIYFLS 561
V++ A+L +F+ ++ + IQW +L +L IG + + +K G A + + IY L
Sbjct: 157 VLVIAILLKFIMRRKFSIIQWEALALLLIGISVNQLSSIPDGTKSFGLAVTTIAYIYTLI 216
Query: 562 INFQNFCSCLAGTFNEYLLKKQGSHVNIFLQNVFMYLDSVLCNXIVLLLKGELGAIFEDF 741
F S LA +NEY LK Q +I+LQN+F+Y + N + G LG +
Sbjct: 217 --FVTVPS-LASVYNEYALKSQFD-TSIYLQNLFLYGYGAIFNFL-----GILGTVIFQG 267
Query: 742 NSLYDIF------VILIIVNSAIXGIVTSF 813
+DI + +I N+A GI++SF
Sbjct: 268 PESFDILRGHSRATMFLICNNAAQGILSSF 297
>07_03_0984 -
23131468-23131679,23132082-23132209,23132300-23132365,
23134421-23134515,23135292-23135340,23135428-23135487,
23135580-23135701,23135799-23135840,23135944-23135992,
23136095-23136166,23136638-23136738,23136835-23136910,
23137002-23137081,23137196-23137307,23137391-23137454,
23137540-23137603,23138544-23138570
Length = 472
Score = 74.1 bits (174), Expect = 1e-13
Identities = 58/240 (24%), Positives = 105/240 (43%), Gaps = 2/240 (0%)
Frame = +1
Query: 97 QGVFVTASKTENGGYDYNTTLVVFLSELLKLIVSAI-LYTLGRENKPHIFKAIAINXXXX 273
Q + + SK G Y+Y+ T F E LK ++S I LY ++ +
Sbjct: 66 QAILIVWSKRA-GKYEYSVTTANFSVEALKCLLSLIALYRTWNSQGVTEDNRLSTSFDEV 124
Query: 274 XXXXXXXXXXCFYNNLAFINLSHYDPTSYYILLQFRVVLTALLFQFLFKKDLTFIQWISL 453
N L + ++ D +Y IL ++ T +L++ + KK L+ IQW +
Sbjct: 125 SVYPIPAILYMVKNLLQYYIFAYVDAPAYQILKNLNIISTGVLYRIILKKKLSEIQWAAF 184
Query: 454 GILTIGCMIKNFDASTVNSKEDG-NAWSQVLNIYFLSINFQNFCSCLAGTFNEYLLKKQG 630
+L GC + S+ + + W + + L S AG + E ++KK+
Sbjct: 185 ILLCAGCTTAQLNPSSDHVLQTPIQGWVMAIVMALL--------SGFAGVYTEAIIKKRP 236
Query: 631 SHVNIFLQNVFMYLDSVLCNXIVLLLKGELGAIFEDFNSLYDIFVILIIVNSAIXGIVTS 810
S NI +QN ++Y+ +L N + + ++ + + F Y +L+I+N A+ GI S
Sbjct: 237 SR-NINVQNFWLYIFGMLFNLVAICVQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVS 295
>01_06_1675 +
39078774-39078890,39079607-39079723,39079950-39080006,
39080340-39080417,39080553-39080597,39080872-39080931,
39081149-39081271,39081850-39081927,39082056-39082125,
39082612-39082719,39082962-39083095,39083177-39083247,
39083384-39083432,39083507-39083557
Length = 385
Score = 61.7 bits (143), Expect = 7e-10
Identities = 60/247 (24%), Positives = 111/247 (44%), Gaps = 8/247 (3%)
Frame = +1
Query: 97 QGVFVTASKTENGGYDYNTTLVVFLSELLKLIVSAILYTL-GRENK--PHIFKAIAINXX 267
Q + V K + G + ++ V FL+E+ K+I + I+ + R K F ++
Sbjct: 39 QPILVYMCKVD-GKFKFSPVSVNFLTEITKIIFAIIMLCIQARRLKVGEKPFLTVSTFMQ 97
Query: 268 XXXXXXXXXXXXCFY---NNLAFINLSHYDPTSYYILLQFRVVLTALLFQFLFKKDLTFI 438
FY N + F+ +++P + +L +V++ A+L + + ++ + I
Sbjct: 98 AARNNVLLAVPALFYAINNYMKFVMQLYFNPATVKMLGNLKVLVIAVLLKVIMRRRFSTI 157
Query: 439 QWISLGILTIGCMIKNFDASTVNSKEDGNAWSQVLNIYFLSINFQNFCSCLAGTFNEYLL 618
QW +L +L IG + + S G + +Y L F LA +NE L
Sbjct: 158 QWEALALLLIGISVNQLKSLPEGSSTLGLPVAAGAYLYTL---FFVTVPALASVYNEKAL 214
Query: 619 KKQGSHVNIFLQNVFMYLDSVLCNXIVLLLKGELGAIFEDFNSL--YDIFVILIIVNSAI 792
K Q +I+LQN+F+Y + N + L++ + FN L + + +I N+A
Sbjct: 215 KSQFD-TSIYLQNLFLYGYGAIFNFLGLVITAIIQGP-SSFNILEGHSKATMFLICNNAA 272
Query: 793 XGIVTSF 813
GI++SF
Sbjct: 273 QGILSSF 279
>02_04_0529 +
23697249-23697419,23697610-23697726,23698292-23698348,
23698539-23698616,23698722-23698766,23698858-23698917,
23699340-23699417,23699524-23699646,23699772-23699849,
23700048-23700117,23700317-23700424,23700543-23700676,
23700756-23700832,23701027-23701075,23701689-23701697
Length = 417
Score = 50.4 bits (115), Expect = 2e-06
Identities = 70/277 (25%), Positives = 119/277 (42%), Gaps = 38/277 (13%)
Frame = +1
Query: 97 QGVFVTASKTENGGYDYNTTLVVFLSELLKLIVSAILYTLGREN-----KPHIFKAIAIN 261
Q + V SK + G + ++ V FL+E+ K++ + ++ + KP + ++ I
Sbjct: 57 QPILVFMSKVD-GKFQFSPISVNFLTEVTKVVFAIVMLIIQSRKQKVGEKPLLARSTFIQ 115
Query: 262 XXXXXXXXXXXXXXCFYNN-LAFINLSHYDPTSYYILLQFRVVLTALLFQFLFKKDLTFI 438
NN L FI +++P++ +L +V++ A+L +F+ K+ + I
Sbjct: 116 AARNNALLAVPALLYAINNYLKFIMQLYFNPSTVKMLSNLKVLVIAVLLKFIMKRRFSVI 175
Query: 439 Q--------------------------WISLGILTIGCMIKNFDASTVNSKEDGNAWSQV 540
Q W +L +L IG I + G + +
Sbjct: 176 QNCHVLSFNVDDHNLQSGLLVTHYVTEWEALALLLIGISINQLRTVPAGNTAFGLPVTAI 235
Query: 541 LNIYFLSINFQNFCSCLAGTFNEYLLKKQGSHVNIFLQNVFMYLDSVLCNXIVLLLKGEL 720
IY L F S LA +NEY LK Q +I+LQN+F+Y + N + G L
Sbjct: 236 AYIYTLI--FVTVPS-LASVYNEYALKSQYD-TSIYLQNLFLYGYGAIFNFL-----GIL 286
Query: 721 G-AIF---EDFNSL--YDIFVILIIVNSAIXGIVTSF 813
G A+F E FN L + + +I N+A GI++SF
Sbjct: 287 GTALFQGPESFNILRGHSRATMFLICNNAAQGILSSF 323
>02_02_0461 + 10534733-10536302,10536347-10536396,10536845-10538227
Length = 1000
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 524 LPSSLEFTVDASKFLIMHPIVKIPKDIHCMNVKSFL 417
LP EF + FL++ P+ IP + C N+ + L
Sbjct: 768 LPCFFEFPSLTNMFLVVLPVTSIPLRVWCSNLPALL 803
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,430,578
Number of Sequences: 37544
Number of extensions: 311098
Number of successful extensions: 600
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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