Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_G23
         (814 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8558| Best HMM Match : Nuc_sug_transp (HMM E-Value=0.011)           81   1e-15
SB_58710| Best HMM Match : Nuc_sug_transp (HMM E-Value=2e-21)          46   4e-05
SB_56941| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   1e-04
SB_24914| Best HMM Match : Nuc_sug_transp (HMM E-Value=3.6e-15)        42   8e-04
SB_32331| Best HMM Match : DivIVA (HMM E-Value=0.86)                   29   3.4  

>SB_8558| Best HMM Match : Nuc_sug_transp (HMM E-Value=0.011)
          Length = 175

 Score = 81.0 bits (191), Expect = 1e-15
 Identities = 44/92 (47%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
 Frame = +1

Query: 541 LNIYFLSINFQNFCSCLAGTFNEYLLKKQGSHVNIFLQNVFMYLDSVLCNXIVLLLKGEL 720
           L+   + I  Q FCSC AG +NEYLLK +     I +QNVFMY+DS+LCN +VL+  G L
Sbjct: 9   LDYNLVLILVQVFCSCFAGVYNEYLLKGRSGDAPIMVQNVFMYVDSILCNILVLVYGGSL 68

Query: 721 GAIF--EDFNSLYDIFVILIIVNSAIXGIVTS 810
              F  E   S+    V+ II N+A  GIVTS
Sbjct: 69  QEAFTKESLLSIMQFKVLGIIANNAGIGIVTS 100


>SB_58710| Best HMM Match : Nuc_sug_transp (HMM E-Value=2e-21)
          Length = 169

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 5/151 (3%)
 Frame = +1

Query: 373 QFRVVLTALLFQFLFKKDLTFIQWISLGILTIGCMIKNFD-----ASTVNSKEDGNAWSQ 537
           Q +++ TAL    L  K ++  +W  L +L IG  +   +     A+ +N KE  +A S+
Sbjct: 4   QLKIMTTALFSILLLNKSISRKRWFYLLMLMIGVAVVEIELHRKIAAKMNKKE-ADAASK 62

Query: 538 VLNIYFLSINFQNFCSCLAGTFNEYLLKKQGSHVNIFLQNVFMYLDSVLCNXIVLLLKGE 717
              I FLS+   +  S  AG F E ++K + +  ++++ NV +Y   V    + ++LK  
Sbjct: 63  SFLIGFLSVLAASVISGFAGVFLEKIVKHKST--SLWIMNVHLYSWGVCLGVLGVVLKDG 120

Query: 718 LGAIFEDFNSLYDIFVILIIVNSAIXGIVTS 810
                  F   YD  V  ++  ++  GI+ S
Sbjct: 121 YQISQLGFFYGYDSVVWTVVALASAGGILVS 151


>SB_56941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1034

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 11/161 (6%)
 Frame = +1

Query: 361  YILLQFRVVLTALLFQFLFKKDLTFIQWISLGILTIGCMIKNFDASTVNSKEDGN----- 525
            Y+  Q +++ TAL    +  K L  +QW+SL +L  G  I    +S+  S          
Sbjct: 804  YVTYQLKILTTALFSVLMLNKSLGRLQWLSLVMLFAGVSIVQLQSSSTKSSSTSQPNATM 863

Query: 526  ------AWSQVLNIYFLSINFQNFCSCLAGTFNEYLLKKQGSHVNIFLQNVFMYLDSVLC 687
                  A  Q   + F ++   + CS  AG + E +LK  G+  +++L+NV +   S + 
Sbjct: 864  APSANLATKQNALLGFGAVVMSSLCSGFAGVYFEKILK--GTSGSVWLRNVQLGAYSTVI 921

Query: 688  NXIVLLLKGELGAIFEDFNSLYDIFVILIIVNSAIXGIVTS 810
              I + L        + F   Y   V  +I   A  G++ +
Sbjct: 922  GLIGMQLNDGAKIAEKGFFQGYSSLVWSVICMQAFGGLLVA 962


>SB_24914| Best HMM Match : Nuc_sug_transp (HMM E-Value=3.6e-15)
          Length = 979

 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 18/53 (33%), Positives = 31/53 (58%)
 Frame = +1

Query: 313 NNLAFINLSHYDPTSYYILLQFRVVLTALLFQFLFKKDLTFIQWISLGILTIG 471
           NNL ++ LS+ D  +Y +  Q +++ TAL    +  K L+ I+W +L +L  G
Sbjct: 277 NNLLYVALSNLDAATYQVTYQLKILTTALFSVAMLSKKLSSIKWFALILLMAG 329


>SB_32331| Best HMM Match : DivIVA (HMM E-Value=0.86)
          Length = 888

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -3

Query: 497 DASKFLIMHPIVKIPKDIHCMNVKSFLN 414
           + S+ L  HP  + P+DI C++ +SFL+
Sbjct: 450 EVSRLLYSHPSKRCPRDILCLHNQSFLH 477


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,922,909
Number of Sequences: 59808
Number of extensions: 421252
Number of successful extensions: 838
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)