Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_G23
         (814 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   0.83 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   0.83 
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          25   1.1  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      25   1.1  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   3.4  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   5.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   7.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   7.8  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 607 EYLLKKQGSHVNIFLQNVFMYLDSVLCNXIVLLLKGELG 723
           +Y L+ +  ++N F+ N+ + L    CN     +  ELG
Sbjct: 176 QYRLRAEDINMNTFIANIAVDLGKGGCNDAFAYMSDELG 214


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 583 NKSSENLLIRNKYLVLVTKRCHLLWSSPLMHQSS 482
           N +  N  +R K  VL+     +LW  P ++QSS
Sbjct: 117 NNADGNYEVRYKSNVLIYPNGDVLWVPPAIYQSS 150



 Score = 24.2 bits (50), Expect = 1.5
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 310 YNNLAFINLSHYDPTSYYILLQFRVVLTALLFQFLFKKDLTF 435
           YNN  F++LS Y  +  + ++     L      F  + D+TF
Sbjct: 184 YNNKNFVDLSDYWKSGTWDIINVPAYLNTYKGDFPTETDITF 225


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 319 LAFINLSHYDPTSYYILLQFR 381
           +++++L H  PT YY  ++FR
Sbjct: 281 VSYVSLDHPIPTGYYPTMRFR 301


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 319 LAFINLSHYDPTSYYILLQFR 381
           +++++L H  PT YY  ++FR
Sbjct: 281 VSYVSLDHPIPTGYYPTMRFR 301


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 305 AFITIWHLSTYHIMILLRIIFYF 373
           A ++ W ++ Y+I+IL   IFYF
Sbjct: 67  AVMSCW-MNVYYIVILAWAIFYF 88


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 195 FCYLIHSREGKQTTHFQSNRNK 260
           F Y ++SRE    +H  SN N+
Sbjct: 335 FPYYMYSREQYSQSHLISNENR 356


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 162 CILVRITKTNSFCYLIHSREGKQTTH 239
           C+L R    N+F     SREG++  H
Sbjct: 628 CLLPRPKSENNFASQELSREGRRIFH 653


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 162 CILVRITKTNSFCYLIHSREGKQTTH 239
           C+L R    N+F     SREG++  H
Sbjct: 596 CLLPRPKSENNFASQELSREGRRIFH 621


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,741
Number of Sequences: 438
Number of extensions: 4274
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)