Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_G22
(775 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33375| Best HMM Match : ADK (HMM E-Value=1.6e-30) 119 2e-27
SB_13785| Best HMM Match : No HMM Matches (HMM E-Value=.) 107 1e-23
SB_58530| Best HMM Match : No HMM Matches (HMM E-Value=.) 96 2e-20
SB_19245| Best HMM Match : ADK (HMM E-Value=0) 79 4e-15
SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42) 50 2e-06
SB_33720| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 4e-04
SB_31065| Best HMM Match : ADK (HMM E-Value=1.5e-31) 41 0.001
SB_379| Best HMM Match : ADK (HMM E-Value=3.2e-05) 35 0.064
SB_4186| Best HMM Match : ADK (HMM E-Value=0.094) 34 0.11
SB_18188| Best HMM Match : SRP54 (HMM E-Value=0) 32 0.45
SB_36947| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.59
SB_43624| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_43601| Best HMM Match : ADK (HMM E-Value=2.3e-05) 31 1.0
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 30 1.8
SB_16493| Best HMM Match : NACHT (HMM E-Value=1.1e-08) 30 1.8
SB_35426| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_42793| Best HMM Match : PARP (HMM E-Value=5.4e-22) 29 5.5
SB_5453| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_57190| Best HMM Match : SRP54_N (HMM E-Value=1.1e-27) 28 9.6
>SB_33375| Best HMM Match : ADK (HMM E-Value=1.6e-30)
Length = 297
Score = 119 bits (287), Expect = 2e-27
Identities = 55/102 (53%), Positives = 74/102 (72%)
Frame = +3
Query: 123 SKKPIVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGE 302
S + IV++LGGPG+GKGT CD +V KY + HLS GDLLR EV G+ER + +T +M G+
Sbjct: 114 SGQRIVYILGGPGAGKGTICDSVVKKYNYCHLSAGDLLREEVTRGNERGQMITEMMREGK 173
Query: 303 LVPNEIVLDLLKEAILARAEESKGFLIDGYPREKSQGIAFEE 428
LVP EI + LL++A + ++ GFLIDG+PR+ QGI FEE
Sbjct: 174 LVPKEITIGLLQDA-MREHKDMPGFLIDGFPRDIDQGITFEE 214
Score = 52.8 bits (121), Expect = 3e-07
Identities = 21/59 (35%), Positives = 33/59 (55%)
Frame = +3
Query: 138 VWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGELVPN 314
+W GGP +GK T C + ++ +TH+ G L+ E + ++RAK L + G VPN
Sbjct: 239 IWSKGGPATGKKTHCKHVAERFNYTHIMPGTLVAQEAQKDTDRAKQLIQTISAGNDVPN 297
>SB_13785| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 386
Score = 107 bits (257), Expect = 1e-23
Identities = 54/123 (43%), Positives = 83/123 (67%), Gaps = 2/123 (1%)
Frame = +3
Query: 318 IVLDLLKEAILARAEESKGFLIDGYPREKSQGIAFEENIAPVSVIIYFEASSETLTQRLL 497
I+L+LL+ A++ + + GFLIDG+PRE QG+ FE+ +A +++YFE S +T+ RLL
Sbjct: 2 IILELLRLAMV-KQPNTTGFLIDGFPRELEQGLEFEKELALCELLLYFECSPDTMKARLL 60
Query: 498 GRAASSGRADDNEETIKLRLKTFLDNNDLVLAQYPD--KLRRINAERPVDEIFAEVQSIL 671
R +SGR DDNEETI RL+TF+ V+ Y + K+++I+AE DE+F +V +L
Sbjct: 61 KRGETSGRVDDNEETILSRLETFITQTMPVIEHYQEEGKVKKISAEGGPDEVFKKVSRVL 120
Query: 672 DPL 680
+ L
Sbjct: 121 EEL 123
Score = 89.4 bits (212), Expect = 3e-18
Identities = 49/152 (32%), Positives = 83/152 (54%)
Frame = +3
Query: 135 IVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGELVPN 314
I++++GGPGSGK ++ G THLS G LL+ E ++R + + + G LV
Sbjct: 136 IMFIVGGPGSGKAELAKRLAESSGRTHLSMGQLLKEEATKDTDRGREVAQAIAMGTLVSP 195
Query: 315 EIVLDLLKEAILARAEESKGFLIDGYPREKSQGIAFEENIAPVSVIIYFEASSETLTQRL 494
E L++L E I++ + +G+++DG+PR Q F E ++ + ++ E S E + +RL
Sbjct: 196 EHALNILTEKIVSDEKNLEGYVVDGFPRSHEQAKNFTEKVSDFNRVVALECSDEEM-ERL 254
Query: 495 LGRAASSGRADDNEETIKLRLKTFLDNNDLVL 590
A A NEE +K R++ + DN +L
Sbjct: 255 ---AKEKLGAALNEEQLKTRIEVYRDNTIAML 283
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/47 (46%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
Frame = +3
Query: 135 IVWVLGGPGSGKGTQCDKIVAK-YGFTHLSTGDLLRAEVKSGSERAK 272
IV+++GGPGSGK T+ K++A+ G TH+S G LL+ E ++RA+
Sbjct: 340 IVFIVGGPGSGK-TELAKLLAESSGRTHISMGQLLKEEATKDTDRAR 385
>SB_58530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 288
Score = 96.3 bits (229), Expect = 2e-20
Identities = 58/178 (32%), Positives = 99/178 (55%), Gaps = 2/178 (1%)
Frame = +3
Query: 135 IVWVLGGPGSGKGTQCDKIVAK-YGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGELVP 311
+++V+GGPGSGK T+ K++A+ G TH+S G LL+ E ++RA+ + + G LV
Sbjct: 106 VIFVIGGPGSGK-TELAKLLAESSGRTHISMGQLLKEEATKDTDRAREVARAIGMGTLVS 164
Query: 312 NEIVLDLLKEAILARAEESKGFLIDGYPREKSQGIAFEENIAPVSVIIYFEASSETLTQR 491
E L +L E I+ + G+++DGYPR Q F E ++ + ++ E S E + +R
Sbjct: 165 PEHALGILSETIVRGEKNLGGYVVDGYPRSHEQAKNFTEKVSDFNRVVALECSDEEM-ER 223
Query: 492 LLGRAASSGRADDNEETIKLRLKTFLDNNDLVLAQYPD-KLRRINAERPVDEIFAEVQ 662
L A A NEE +K R++ + DN +L + K +I A + ++E+F + +
Sbjct: 224 L---AKEKLGAALNEEQLKTRIEVYRDNTIAMLDDMEEAKTTKIPAAQTIEEVFEQTK 278
>SB_19245| Best HMM Match : ADK (HMM E-Value=0)
Length = 188
Score = 79.0 bits (186), Expect = 4e-15
Identities = 47/129 (36%), Positives = 75/129 (58%), Gaps = 3/129 (2%)
Frame = +3
Query: 144 VLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGELVPNEIV 323
++G PGSGKGT ++IV +G HLS+G+LLR V++ ++ + A + +GELVP+E++
Sbjct: 36 IMGPPGSGKGTVSERIVRDFGVEHLSSGELLRHHVQNHTDLGEEAQAYILKGELVPDELM 95
Query: 324 LDLLKEAILARAEESKG-FLIDGYPREKSQGIAFEENIAPVSVIIYFEASSETLTQRLLG 500
+DL IL + KG +L+DG+PR Q E + V++ + T+ R+
Sbjct: 96 VDL----ILHELDAKKGNWLLDGFPRTVGQAETLSEK-HKIDVVVNMDVPFATIVDRIKQ 150
Query: 501 R--AASSGR 521
R A SGR
Sbjct: 151 RWVHAVSGR 159
>SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)
Length = 1644
Score = 50.0 bits (114), Expect = 2e-06
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Frame = +3
Query: 348 LARAEESKGFLIDGYPREKSQGIAFEENI---APVSVIIYFEASSETLTQRLLGRAASSG 518
+A+++ K FLIDG+PR + +E + V +++FE + R++ R SSG
Sbjct: 2 MAKSDVQK-FLIDGFPRNEDNLQGWESRMNDKVDVKAVLFFECPEDICIGRIMSRGQSSG 60
Query: 519 RADDNEETIKLRLKTFLDNNDLVLAQY 599
R DDN E+++ R T ++ ++ Y
Sbjct: 61 RPDDNIESLRKRFHTHENSTMPIIEHY 87
>SB_33720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 36.3 bits (80), Expect(2) = 4e-04
Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Frame = +3
Query: 300 ELVPNEIVLDLLKEAILARAEESKGFLIDGYPR-----EKSQGIAFEENIAPVSVIIYFE 464
+LV +++V++L+ + L + E G+L+DG+PR EK G+ E+ A + ++ F
Sbjct: 54 QLVSDDLVVELIDDN-LTKPECQNGWLLDGFPRTVAQAEKLDGL-LEKRNAQLDAVVEFN 111
Query: 465 ASSETLTQRLLG 500
+ L +R+ G
Sbjct: 112 IADSLLVKRITG 123
Score = 25.4 bits (53), Expect(2) = 4e-04
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +3
Query: 144 VLGGPGSGKGTQ 179
+LG PGSGKGTQ
Sbjct: 43 LLGPPGSGKGTQ 54
>SB_31065| Best HMM Match : ADK (HMM E-Value=1.5e-31)
Length = 166
Score = 40.7 bits (91), Expect = 0.001
Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 34/161 (21%)
Frame = +3
Query: 303 LVPNEIVLDLLKEAILARAEESKGFLIDGYPR-----EKSQGIAFEENIAPVSVIIYFEA 467
LV +++V++L+ + L + E G+L+DG+PR EK G+ E+ A + ++ F
Sbjct: 1 LVSDDLVVELIDDN-LTKPECQNGWLLDGFPRTVAQAEKLDGL-LEKRNAQLDAVVEFNI 58
Query: 468 SSETLTQRLLGRA--ASSG-------------------------RADDNEETIKLRLKTF 566
+ L +R+ GR SSG R+DDNE T+ RL+ +
Sbjct: 59 ADSLLVKRITGRLLHKSSGRTYHTEFNPPKEHMKDDITGEPLERRSDDNEATLTKRLQAY 118
Query: 567 LDNNDLVLAQYPDK--LRRINAERPVDEIFAEVQSILDPLV 683
++ Y + +I+A +P D +++ V D V
Sbjct: 119 HSQTTPLIDYYTKRGIHHKIDASKPPDTVYSSVLKAFDDAV 159
>SB_379| Best HMM Match : ADK (HMM E-Value=3.2e-05)
Length = 991
Score = 35.1 bits (77), Expect = 0.064
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 285 IMERGELVPNEIVLDLLKEAILARAEESKGFLIDGYP 395
I+ RGE +P E+V LL E + + G+++DG+P
Sbjct: 16 ILLRGEAIPEELVTKLLIEKVYSPETAHHGYILDGFP 52
>SB_4186| Best HMM Match : ADK (HMM E-Value=0.094)
Length = 1053
Score = 34.3 bits (75), Expect = 0.11
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 135 IVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKS 254
+V + GGPGS KG+ + +V +GF +S DL+ + S
Sbjct: 663 VVIMFGGPGSTKGSIINDLVKMFGFVFISAEDLILKNLPS 702
>SB_18188| Best HMM Match : SRP54 (HMM E-Value=0)
Length = 410
Score = 32.3 bits (70), Expect = 0.45
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 5/115 (4%)
Frame = +3
Query: 99 KKWHP*XTSKKPIVWVLGGPGSGKGTQCDKIVAKY---GF-THLSTGDLLRAEVKSGSER 266
K W P KK ++ +G GSGK T C K+ Y G+ T L D RA ++
Sbjct: 7 KAWTP-SKGKKNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQ 65
Query: 267 AKCLTAIMERGELVPNEIVLDLLKEAILARAEES-KGFLIDGYPREKSQGIAFEE 428
I G + V+ + +E + EE+ + ++D R K + FEE
Sbjct: 66 NATKARIPFYGSYTETDPVI-IAQEGVEKFKEENFEIIIVDTSGRHKQEESLFEE 119
>SB_36947| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 96
Score = 31.9 bits (69), Expect = 0.59
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +1
Query: 94 FIKNGTHSXHRKSQSCGSWEVPDQEREHNATRSSPNTGSLTSRLETCSGLKSKAARRG 267
+ ++G + S +WE D E +++A R++ +T ++ET LK+ RG
Sbjct: 35 YTRSGNNENCSNSDYVDAWETRDLEHDNSAERTTTHTLRTADKIETLISLKAVKHDRG 92
>SB_43624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1018
Score = 31.1 bits (67), Expect = 1.0
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = +3
Query: 123 SKKPIVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDL--LRAEVKSGS-ERAKCLTAIM 290
SK P V+ PGSG GT D+ V K + S+GD + A +K + + K LT+++
Sbjct: 343 SKPPPTGVMPTPGSGPGTSFDQCVFKTDLSKGSSGDTFEMSAFIKEETVQIGKALTSLV 401
>SB_43601| Best HMM Match : ADK (HMM E-Value=2.3e-05)
Length = 712
Score = 31.1 bits (67), Expect = 1.0
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Frame = +3
Query: 306 VPNEIVLDLLKEAILARAEESKGFLIDGYPREKSQGIAFEENIAPVSVIIYFEASSETLT 485
VP+++VL LL + + +KG+++ G+P+ + Q A + A S++ L
Sbjct: 325 VPDDLVLQLLHQRMSRLDAVTKGWVLHGFPKTREQAEALGK--AGYEPNRRRVLSTDVLG 382
Query: 486 QRL--LGRAASSGRADDNEETIKLRLKTFLDNNDLVLAQYPDKLRRINAERPVDEIF 650
RL L R +S R + + + +D + + K I+AE+ +IF
Sbjct: 383 LRLQALNRPSSGMRQQQIDRLRQATQGANKERDDAITVMWSHKKSAIDAEKDWFKIF 439
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 30.3 bits (65), Expect = 1.8
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +2
Query: 506 RQLRPCRRQRGDHQAQAEDLPGQQRP 583
++ R R+Q+GD +++ ED+P + RP
Sbjct: 82 KKKRKKRKQQGDEESEPEDIPAESRP 107
>SB_16493| Best HMM Match : NACHT (HMM E-Value=1.1e-08)
Length = 833
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 138 VWVLGGPGSGKGTQCDKIVAKY 203
V V GGPGSGK T C ++V ++
Sbjct: 59 VLVEGGPGSGKTTMCQRLVQEW 80
>SB_35426| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +1
Query: 217 SRLETCSGLKSKAARRGRNALPLLWKEASLSLMKSSWIC*KKRSW-PVLKNPKASSS 384
++L S A GR WK SLS+ K WI R ++KNP++ S+
Sbjct: 221 AKLTASSSQSGFPASSGRLLGASAWKPVSLSIDKEPWIMTGNRDQNTIIKNPQSMSA 277
>SB_42793| Best HMM Match : PARP (HMM E-Value=5.4e-22)
Length = 585
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 408 QGIAFEENIAPVSVIIYFEASSETLT-QRLLGRAASSGRADDNEETIKLR 554
QGI F + + + IY + S++ L Q LLGR+ +AD N + KLR
Sbjct: 301 QGIYFATDSSKSAQGIYTKGSNKLLVCQVLLGRSMIVRKADPNMDKAKLR 350
>SB_5453| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2578
Score = 28.3 bits (60), Expect = 7.3
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 408 QGIAFEENIAPVSVIIYFEASSETLT-QRLLGRAASSGRADDNEETIKLR 554
QGI F + + + IY + S++ L Q LLGR+ +AD N + KLR
Sbjct: 1481 QGIYFATDSSKSAQGIYTKGSNKLLVCQVLLGRSMIVRKADRNMDKAKLR 1530
>SB_57190| Best HMM Match : SRP54_N (HMM E-Value=1.1e-27)
Length = 120
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 99 KKWHP*XTSKKPIVWVLGGPGSGKGTQCDK 188
K W P KK ++ +G GSGK T C K
Sbjct: 92 KAWTP-SKGKKNVIMFVGLQGSGKTTTCSK 120
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,649,912
Number of Sequences: 59808
Number of extensions: 506946
Number of successful extensions: 1435
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1423
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -