Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_G20
(851 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|... 38 0.002
SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyc... 30 0.36
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 30 0.48
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 29 0.84
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 29 0.84
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 28 1.9
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac... 28 1.9
SPAC664.08c |||traub transciption factor family protein |Schizos... 28 1.9
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 2.6
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 27 3.4
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 26 5.9
SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom... 26 5.9
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 26 5.9
SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces... 26 5.9
>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 37.9 bits (84), Expect = 0.002
Identities = 18/56 (32%), Positives = 35/56 (62%)
Frame = +1
Query: 442 RREAHTQAEQKRRDAIKKGYDSLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
+R +H + E++RR+AI +G L ++VP C++ +K ++LQ++ YI+ L
Sbjct: 89 KRLSHKEVERRRREAISEGIKELANIVPGCEK--------NKGSILQRTAQYIRSL 136
>SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 209
Score = 30.3 bits (65), Expect = 0.36
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +1
Query: 364 SSSNQNTEDEDDSGDNKASALSFKERR--REAHTQAEQKRRDAIKKGYDSLQDLV 522
+S N + + DDSGD S L+ ++ + + QA QK R KK +LQD V
Sbjct: 99 ASHNSPSRELDDSGDENTSKLTGTKQSMLKARNRQAAQKCRIKKKKYLQTLQDQV 153
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 29.9 bits (64), Expect = 0.48
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +1
Query: 361 PSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDLVP 525
PS+ + +D DD N S+ S K + + TQA + + D + G + +D +P
Sbjct: 87 PSTDKKKKKDNDDFKQNLKSS-SNKTEEKYSATQASKSKNDEFELGGEENEDEMP 140
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 29.1 bits (62), Expect = 0.84
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 328 SSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRD 483
S+G+ + QTP+S +N EDE+ K RR Q ++K+ D
Sbjct: 44 STGTESEVIQTPTSVEENNEDENSMSTTTIEIPVVK--RRNLRNQKKKKKTD 93
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 29.1 bits (62), Expect = 0.84
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +1
Query: 325 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYD 504
GS S++ S+++ DED+ DNK ++R+ + ++ +KR I Y+
Sbjct: 231 GSDQSMETSESEEEESSESESDEDEDEDNKG---KIRKRKTDDAKKSRKKRAPHIHIEYE 287
Query: 505 SLQ--DLVPTCQQS 540
+ + +P Q S
Sbjct: 288 QERENEKIPAVQHS 301
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 27.9 bits (59), Expect = 1.9
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +1
Query: 352 HQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQ---KRRDAIKKGYDSLQ 513
+ P N +T DED S + S+ REA++ A + +RR +DSL+
Sbjct: 974 YSNPDDKNTSTSDEDTSESEEESSNGLFSLAREANSHASKSLPQRRQIQFLDFDSLK 1030
>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 265
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +1
Query: 343 QNIHQTPSSSNQNTEDEDDSGD--NKASALSFKERRREAHTQ 462
Q + + ++++ D DDS D NK S +S K R+ E+++Q
Sbjct: 105 QELLRQTLEADEDASDSDDSVDSSNKNSEVSIKRRKTESNSQ 146
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 27.9 bits (59), Expect = 1.9
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Frame = +1
Query: 328 SSGSIQNIHQTPSSSNQNTEDEDDS--------GDNKASALSFKERRREAHTQAEQKRRD 483
+SGS+ + +PS + EDE+D+ ++AS++S + + + +K D
Sbjct: 81 NSGSLNSQSSSPSEEEDSEEDENDAVSEDHENFSSSEASSISEENEDDDQSSAIPEKDMD 140
Query: 484 AIKK---GYDSLQDLVPTCQQSD 543
+KK G L D + T D
Sbjct: 141 RLKKIINGEKKLSDQIRTSALED 163
>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 547
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +1
Query: 277 LKFHYNN*YPNMYPRCGSSGSIQNIHQTPSSSNQNTEDEDDSGDN 411
L FH P + + + T SS N ++ EDDSG++
Sbjct: 40 LPFHREREKVESNPNSSDEEDLTSTNNTRSSDNTTSDTEDDSGED 84
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 27.1 bits (57), Expect = 3.4
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = +1
Query: 379 NTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCQQSDASGYK 558
N ++ D+S K L KER E E++RRD +K +D+ D + ++ SG
Sbjct: 303 NAKELDESRRKKIELLEKKERDEEQF--LEKERRDTARK-WDNQGDFIRNMRKEIYSGDS 359
Query: 559 PSKA 570
S A
Sbjct: 360 VSLA 363
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 352 HQTPSSSNQNTEDEDDSGDNKASALS 429
+ TP S + ED+D +G NK +A S
Sbjct: 365 NNTPMSEKRKREDDDANGPNKFAARS 390
>SPAC23H4.06 |gln1||glutamate-ammonia ligase
Gln1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 359
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +1
Query: 661 VVALRIMQANYEQIVKAQHSVPGLNEQRLTDQDKFQVG 774
V A I++A+Y+ + A ++ G+N + + Q ++QVG
Sbjct: 171 VFARDIVEAHYKACLYAGINISGINAEVMPSQWEYQVG 208
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 768 LKFVLVRQPLLIQTRYGMLSFNNLFIIC 685
L F + RQPLL T + +NN +++C
Sbjct: 727 LPFSVSRQPLLSLTNDILQLYNNFYVLC 754
>SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 446
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +1
Query: 325 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRD 483
G SG + + S+ ++++ D+ D+ LS ERR + +QK++D
Sbjct: 378 GYSGYVAGLSSRDPDSDFDSDNVDEYIDDHKRGLSSTERRDLDRVRDKQKKQD 430
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,217,598
Number of Sequences: 5004
Number of extensions: 63339
Number of successful extensions: 233
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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