Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_G20
(851 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g00050.1 68417.m00005 basic helix-loop-helix (bHLH) family pr... 50 3e-06
At3g59060.2 68416.m06584 basic helix-loop-helix (bHLH) family pr... 49 5e-06
At3g59060.1 68416.m06583 basic helix-loop-helix (bHLH) family pr... 49 5e-06
At2g46970.1 68415.m05867 basic helix-loop-helix (bHLH) protein, ... 48 1e-05
At2g43010.2 68415.m05338 phytochrome-interacting factor 4 (PIF4)... 47 2e-05
At2g43010.1 68415.m05337 phytochrome-interacting factor 4 (PIF4)... 47 2e-05
At1g09530.2 68414.m01069 phytochrome interacting factor 3 (PIF3)... 46 3e-05
At1g09530.1 68414.m01068 phytochrome interacting factor 3 (PIF3)... 46 3e-05
At2g20180.2 68415.m02360 basic helix-loop-helix (bHLH) family pr... 46 4e-05
At2g20180.1 68415.m02359 basic helix-loop-helix (bHLH) family pr... 46 4e-05
At1g69010.1 68414.m07896 basic helix-loop-helix (bHLH) family pr... 44 1e-04
At1g26260.2 68414.m03204 basic helix-loop-helix (bHLH) family pr... 44 1e-04
At1g26260.1 68414.m03203 basic helix-loop-helix (bHLH) family pr... 44 1e-04
At3g23690.1 68416.m02979 basic helix-loop-helix (bHLH) family pr... 44 2e-04
At2g18300.2 68415.m02134 basic helix-loop-helix (bHLH) family pr... 44 2e-04
At2g18300.1 68415.m02133 basic helix-loop-helix (bHLH) family pr... 44 2e-04
At4g30980.1 68417.m04397 basic helix-loop-helix (bHLH) family pr... 42 5e-04
At2g24260.1 68415.m02898 basic helix-loop-helix (bHLH) family pr... 41 0.001
At5g38860.1 68418.m04700 basic helix-loop-helix (bHLH) family pr... 40 0.002
At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family pr... 40 0.002
At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family pr... 40 0.002
At5g61270.1 68418.m07689 basic helix-loop-helix (bHLH) family pr... 39 0.005
At4g36930.1 68417.m05235 basic helix-loop-helix (bHLH) protein S... 39 0.005
At4g27120.2 68417.m03898 expressed protein 39 0.005
At4g27120.1 68417.m03897 expressed protein 39 0.005
At1g68920.2 68414.m07888 basic helix-loop-helix (bHLH) family pr... 39 0.005
At1g68920.1 68414.m07887 basic helix-loop-helix (bHLH) family pr... 39 0.005
At1g10120.1 68414.m01141 basic helix-loop-helix (bHLH) family pr... 38 0.006
At3g07340.1 68416.m00875 basic helix-loop-helix (bHLH) family pr... 38 0.008
At4g34530.1 68417.m04907 basic helix-loop-helix (bHLH) family pr... 38 0.011
At1g03040.1 68414.m00276 basic helix-loop-helix (bHLH) family pr... 38 0.011
At4g37850.1 68417.m05354 basic helix-loop-helix (bHLH) family pr... 37 0.015
At4g28800.1 68417.m04118 bHLH family protein contains Pfam profi... 37 0.015
At5g08130.1 68418.m00948 basic helix-loop-helix (bHLH) family pr... 36 0.026
At4g28790.2 68417.m04116 basic helix-loop-helix (bHLH) family pr... 36 0.026
At4g28790.1 68417.m04117 basic helix-loop-helix (bHLH) family pr... 36 0.026
At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family pr... 36 0.026
At2g22750.1 68415.m02697 basic helix-loop-helix (bHLH) family pr... 36 0.026
At1g59640.2 68414.m06708 basic helix-loop-helix (bHLH) family pr... 36 0.026
At1g59640.1 68414.m06707 basic helix-loop-helix (bHLH) family pr... 36 0.026
At5g58010.1 68418.m07258 basic helix-loop-helix (bHLH) family pr... 36 0.045
At5g62610.1 68418.m07857 basic helix-loop-helix (bHLH) family pr... 35 0.060
At1g73830.1 68414.m08548 basic helix-loop-helix (bHLH) family pr... 35 0.060
At1g18400.1 68414.m02298 basic helix-loop-helix (bHLH) family pr... 35 0.079
At5g67110.1 68418.m08461 basic helix-loop-helix (bHLH) family pr... 34 0.10
At5g48560.1 68418.m06005 basic helix-loop-helix (bHLH) family pr... 34 0.10
At3g57800.2 68416.m06443 basic helix-loop-helix (bHLH) family pr... 34 0.10
At2g31210.1 68415.m03811 basic helix-loop-helix (bHLH) family pr... 34 0.10
At5g50915.2 68418.m06314 basic helix-loop-helix (bHLH) family pr... 34 0.14
At5g50915.1 68418.m06313 basic helix-loop-helix (bHLH) family pr... 34 0.14
At3g57800.1 68416.m06442 basic helix-loop-helix (bHLH) family pr... 33 0.18
At3g28770.1 68416.m03591 expressed protein 33 0.24
At1g25330.1 68414.m03143 basic helix-loop-helix (bHLH) family pr... 33 0.24
At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to... 33 0.32
At2g42300.1 68415.m05236 basic helix-loop-helix (bHLH) family pr... 33 0.32
At4g17880.1 68417.m02665 basic helix-loop-helix (bHLH) family pr... 32 0.56
At1g76180.1 68414.m08846 dehydrin (ERD14) identical to SP|P42763... 32 0.56
At1g61660.2 68414.m06950 basic helix-loop-helix (bHLH) family pr... 32 0.56
At1g61660.1 68414.m06949 basic helix-loop-helix (bHLH) family pr... 32 0.56
At1g27740.1 68414.m03390 basic helix-loop-helix (bHLH) family pr... 31 0.74
At1g01260.1 68414.m00043 basic helix-loop-helix (bHLH) family pr... 31 0.74
At1g25310.1 68414.m03141 basic helix-loop-helix (bHLH) family pr... 31 0.97
At3g29075.1 68416.m03637 glycine-rich protein 31 1.3
At2g44200.1 68415.m05500 expressed protein 30 1.7
At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putati... 30 1.7
At5g46760.1 68418.m05760 basic helix-loop-helix (bHLH) family pr... 30 2.2
At4g00870.1 68417.m00118 basic helix-loop-helix (bHLH) family pr... 30 2.2
At2g46510.1 68415.m05796 basic helix-loop-helix (bHLH) family pr... 30 2.2
At1g63650.2 68414.m07202 basic helix-loop-helix (bHLH) family pr... 30 2.2
At1g63650.1 68414.m07201 basic helix-loop-helix (bHLH) family pr... 30 2.2
At5g43650.1 68418.m05335 basic helix-loop-helix (bHLH) family pr... 29 3.0
At5g41315.1 68418.m05021 basic helix-loop-helix (bHLH) family pr... 29 3.9
At5g24390.1 68418.m02875 RabGAP/TBC domain-containing protein si... 29 3.9
At2g40200.1 68415.m04943 basic helix-loop-helix (bHLH) family pr... 29 3.9
At2g14760.1 68415.m01667 basic helix-loop-helix protein / bHLH p... 29 3.9
At5g63720.1 68418.m07998 hypothetical protein 29 5.2
At5g37800.1 68418.m04552 basic helix-loop-helix (bHLH) family pr... 29 5.2
At4g01720.1 68417.m00223 WRKY family transcription factor simila... 29 5.2
At3g30725.1 68416.m03909 expressed protein ; expression supporte... 29 5.2
At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR... 28 6.9
At4g16430.1 68417.m02487 basic helix-loop-helix (bHLH) family pr... 28 6.9
At3g30775.1 68416.m03933 proline oxidase, mitochondrial / osmoti... 28 6.9
At2g21940.2 68415.m02607 shikimate kinase, putative similar to s... 28 6.9
At2g21940.1 68415.m02606 shikimate kinase, putative similar to s... 28 6.9
At5g38710.1 68418.m04682 proline oxidase, putative / osmotic str... 28 9.1
At5g23240.1 68418.m02719 DNAJ heat shock N-terminal domain-conta... 28 9.1
At5g16500.1 68418.m01928 protein kinase family protein contains ... 28 9.1
At4g29930.1 68417.m04258 basic helix-loop-helix (bHLH) family pr... 28 9.1
At3g42140.1 68416.m04327 hypothetical protein 28 9.1
At3g21480.1 68416.m02710 transcription activation domain-interac... 28 9.1
At1g66470.1 68414.m07551 basic helix-loop-helix (bHLH) family pr... 28 9.1
At1g32640.1 68414.m04026 basic helix-loop-helix (bHLH) protein (... 28 9.1
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 28 9.1
At1g10610.1 68414.m01202 basic helix-loop-helix (bHLH) family pr... 28 9.1
>At4g00050.1 68417.m00005 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 399
Score = 49.6 bits (113), Expect = 3e-06
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Frame = +1
Query: 325 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREA-HTQAEQKRRDAIKKGY 501
GS + + H + S EDE++ S++S K R A H Q+E+KRRD I +
Sbjct: 174 GSHDNTIDDHDSVCHSRPQMEDEEEKKAGGKSSVSTKRSRAAAIHNQSERKRRDKINQRM 233
Query: 502 DSLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
+LQ LVP ++D KA++L + I+Y++ L
Sbjct: 234 KTLQKLVPNSSKTD-------KASMLDEVIEYLKQL 262
>At3g59060.2 68416.m06584 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 444
Score = 48.8 bits (111), Expect = 5e-06
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Frame = +1
Query: 382 TEDEDDSGDNKASALSFKERRR---EAHTQAEQKRRDAIKKGYDSLQDLVPTCQQSDASG 552
T +D + NK+S S RR E H +E++RRD I + +LQ+L+P C ++D
Sbjct: 234 TSTDDQTMGNKSSQRSGSTRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSRTD--- 290
Query: 553 YKPSKAAVLQKSIDYIQYL 609
KA++L ++IDY++ L
Sbjct: 291 ----KASILDEAIDYLKSL 305
>At3g59060.1 68416.m06583 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 442
Score = 48.8 bits (111), Expect = 5e-06
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Frame = +1
Query: 382 TEDEDDSGDNKASALSFKERRR---EAHTQAEQKRRDAIKKGYDSLQDLVPTCQQSDASG 552
T +D + NK+S S RR E H +E++RRD I + +LQ+L+P C ++D
Sbjct: 234 TSTDDQTMGNKSSQRSGSTRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSRTD--- 290
Query: 553 YKPSKAAVLQKSIDYIQYL 609
KA++L ++IDY++ L
Sbjct: 291 ----KASILDEAIDYLKSL 305
>At2g46970.1 68415.m05867 basic helix-loop-helix (bHLH) protein,
putative similar to PIF3 like basic Helix Loop Helix
protein (PIL1) [Arabidopsis thaliana] GI:22535492;
contains Myc-type, 'helix-loop-helix' dimerization
domain signature, PROSITE:PS00038
Length = 416
Score = 47.6 bits (108), Expect = 1e-05
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Frame = +1
Query: 334 GSIQNIHQTPSSSNQNTEDEDDSGDNKASA---LSFKERRREAHTQAEQKRRDAIKKGYD 504
G I+ T S+N + E +D A ++ ++R E H E+KRRD K
Sbjct: 191 GDIEEEESTYLSNNSDDESDDAKTQVHARTRKPVTKRKRSTEVHKLYERKRRDEFNKKMR 250
Query: 505 SLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
+LQDL+P C YK KA++L ++I Y++ L
Sbjct: 251 ALQDLLPNC-------YKDDKASLLDEAIKYMRTL 278
>At2g43010.2 68415.m05338 phytochrome-interacting factor 4 (PIF4) /
basic helix-loop-helix protein 9 (bHLH9) / short under
red-light 2 (SRL2) identical to SP|Q8W2F3
Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (Short under red-light 2)
{Arabidopsis thaliana}; supporting cDNA
gi|18026965|gb|AF251694.1|AF251694
Length = 428
Score = 46.8 bits (106), Expect = 2e-05
Identities = 23/67 (34%), Positives = 41/67 (61%)
Frame = +1
Query: 409 NKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCQQSDASGYKPSKAAVLQKS 588
N+ S + + R E H +E++RRD I + +LQ+L+P C ++D KA++L ++
Sbjct: 247 NQRSGSNRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTD-------KASILDEA 299
Query: 589 IDYIQYL 609
IDY++ L
Sbjct: 300 IDYLKSL 306
>At2g43010.1 68415.m05337 phytochrome-interacting factor 4 (PIF4) /
basic helix-loop-helix protein 9 (bHLH9) / short under
red-light 2 (SRL2) identical to SP|Q8W2F3
Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (Short under red-light 2)
{Arabidopsis thaliana}; supporting cDNA
gi|18026965|gb|AF251694.1|AF251694
Length = 430
Score = 46.8 bits (106), Expect = 2e-05
Identities = 23/67 (34%), Positives = 41/67 (61%)
Frame = +1
Query: 409 NKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCQQSDASGYKPSKAAVLQKS 588
N+ S + + R E H +E++RRD I + +LQ+L+P C ++D KA++L ++
Sbjct: 247 NQRSGSNRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTD-------KASILDEA 299
Query: 589 IDYIQYL 609
IDY++ L
Sbjct: 300 IDYLKSL 306
>At1g09530.2 68414.m01069 phytochrome interacting factor 3 (PIF3)
identical to phytochrome interacting factor 3 (PIF3)
GI:3929585 from [Arabidopsis thaliana]
Length = 524
Score = 46.0 bits (104), Expect = 3e-05
Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 8/106 (7%)
Frame = +1
Query: 316 PRCGSSGSIQNIHQTPSSSNQNTED-EDDSGDNKASAL-------SFKERRREAHTQAEQ 471
P S S++ H + ++ED E++SGD + A S + R E H +E+
Sbjct: 294 PSESPSLSLKRKHSNIQDIDCHSEDVEEESGDGRKEAGPSRTGLGSKRSRSAEVHNLSER 353
Query: 472 KRRDAIKKGYDSLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
+RRD I + +LQ+L+P C + D KA++L ++I+Y++ L
Sbjct: 354 RRRDRINEKMRALQELIPNCNKVD-------KASMLDEAIEYLKSL 392
>At1g09530.1 68414.m01068 phytochrome interacting factor 3 (PIF3)
identical to phytochrome interacting factor 3 (PIF3)
GI:3929585 from [Arabidopsis thaliana]
Length = 524
Score = 46.0 bits (104), Expect = 3e-05
Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 8/106 (7%)
Frame = +1
Query: 316 PRCGSSGSIQNIHQTPSSSNQNTED-EDDSGDNKASAL-------SFKERRREAHTQAEQ 471
P S S++ H + ++ED E++SGD + A S + R E H +E+
Sbjct: 294 PSESPSLSLKRKHSNIQDIDCHSEDVEEESGDGRKEAGPSRTGLGSKRSRSAEVHNLSER 353
Query: 472 KRRDAIKKGYDSLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
+RRD I + +LQ+L+P C + D KA++L ++I+Y++ L
Sbjct: 354 RRRDRINEKMRALQELIPNCNKVD-------KASMLDEAIEYLKSL 392
>At2g20180.2 68415.m02360 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 478
Score = 45.6 bits (103), Expect = 4e-05
Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Frame = +1
Query: 364 SSSNQNTEDEDDSGDNKASALSFKERRR-EAHTQAEQKRRDAIKKGYDSLQDLVPTCQQS 540
+++++ +++ + S S K R E H +E+KRRD I + +LQ+L+P C +S
Sbjct: 258 TTTDETESRSEETKQARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKS 317
Query: 541 DASGYKPSKAAVLQKSIDYIQYL 609
D KA++L ++I+Y++ L
Sbjct: 318 D-------KASMLDEAIEYMKSL 333
>At2g20180.1 68415.m02359 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 407
Score = 45.6 bits (103), Expect = 4e-05
Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Frame = +1
Query: 364 SSSNQNTEDEDDSGDNKASALSFKERRR-EAHTQAEQKRRDAIKKGYDSLQDLVPTCQQS 540
+++++ +++ + S S K R E H +E+KRRD I + +LQ+L+P C +S
Sbjct: 187 TTTDETESRSEETKQARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKS 246
Query: 541 DASGYKPSKAAVLQKSIDYIQYL 609
D KA++L ++I+Y++ L
Sbjct: 247 D-------KASMLDEAIEYMKSL 262
>At1g69010.1 68414.m07896 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 311
Score = 44.4 bits (100), Expect = 1e-04
Identities = 28/83 (33%), Positives = 44/83 (53%)
Frame = +1
Query: 361 PSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCQQS 540
PSS+ + D ++KASA+ R H+ EQ+RR I + + L++L+P +Q
Sbjct: 25 PSSNTTVHSNRDSKENDKASAI------RSKHSVTEQRRRSKINERFQILRELIPNSEQ- 77
Query: 541 DASGYKPSKAAVLQKSIDYIQYL 609
K A+ L + IDY+QYL
Sbjct: 78 -----KRDTASFLLEVIDYVQYL 95
>At1g26260.2 68414.m03204 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor GBOF-1
GI:5923912 from [Tulipa gesneriana]
Length = 390
Score = 44.4 bits (100), Expect = 1e-04
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Frame = +1
Query: 343 QNIHQTPSSSNQNTEDEDDSGDN-KASALSFKERRREA---HTQAEQKRRDAIKKGYDSL 510
Q Q+P+S+ T E D+ K + + RR +A H+ AE+ RR+ I + L
Sbjct: 193 QKDEQSPTSNANKTNSEKQPSDSLKDGYIHMRARRGQATNSHSLAERVRREKISERMKFL 252
Query: 511 QDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
QDLVP C + +G KA +L + I+Y+Q L
Sbjct: 253 QDLVPGCDK--VTG----KAVMLDEIINYVQSL 279
>At1g26260.1 68414.m03203 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor GBOF-1
GI:5923912 from [Tulipa gesneriana]
Length = 390
Score = 44.4 bits (100), Expect = 1e-04
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Frame = +1
Query: 343 QNIHQTPSSSNQNTEDEDDSGDN-KASALSFKERRREA---HTQAEQKRRDAIKKGYDSL 510
Q Q+P+S+ T E D+ K + + RR +A H+ AE+ RR+ I + L
Sbjct: 193 QKDEQSPTSNANKTNSEKQPSDSLKDGYIHMRARRGQATNSHSLAERVRREKISERMKFL 252
Query: 511 QDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
QDLVP C + +G KA +L + I+Y+Q L
Sbjct: 253 QDLVPGCDK--VTG----KAVMLDEIINYVQSL 279
>At3g23690.1 68416.m02979 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 371
Score = 43.6 bits (98), Expect = 2e-04
Identities = 35/107 (32%), Positives = 49/107 (45%), Gaps = 12/107 (11%)
Frame = +1
Query: 325 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASA---------LSFKERRREA---HTQAE 468
GS G ++ SS E D GDNK A + + RR +A H+ AE
Sbjct: 147 GSKGGKRSKQDVAGSSKNGVEKCDSKGDNKDDAKPPEAPKDYIHVRARRGQATDSHSLAE 206
Query: 469 QKRRDAIKKGYDSLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
+ RR+ I + LQDLVP C + KA +L + I+Y+Q L
Sbjct: 207 RARREKISERMTLLQDLVPGCNRI------TGKAVMLDEIINYVQSL 247
>At2g18300.2 68415.m02134 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain ;supported by cDNA
gi|20127067|gb|AF488597.1|
Length = 337
Score = 43.6 bits (98), Expect = 2e-04
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Frame = +1
Query: 346 NIHQTPSSSNQNTEDEDDSGDN-KASALSFKERRREA---HTQAEQKRRDAIKKGYDSLQ 513
N+ T +SS+ + E + +N K + + RR +A H+ AE+ RR+ I K LQ
Sbjct: 156 NMGNTEASSDTSKETSKGASENQKLDYIHVRARRGQATDRHSLAERARREKISKKMKYLQ 215
Query: 514 DLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
D+VP C + +G KA +L + I+Y+Q L
Sbjct: 216 DIVPGCNK--VTG----KAGMLDEIINYVQCL 241
>At2g18300.1 68415.m02133 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain ;supported by cDNA
gi|20127067|gb|AF488597.1|
Length = 335
Score = 43.6 bits (98), Expect = 2e-04
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Frame = +1
Query: 346 NIHQTPSSSNQNTEDEDDSGDN-KASALSFKERRREA---HTQAEQKRRDAIKKGYDSLQ 513
N+ T +SS+ + E + +N K + + RR +A H+ AE+ RR+ I K LQ
Sbjct: 156 NMGNTEASSDTSKETSKGASENQKLDYIHVRARRGQATDRHSLAERARREKISKKMKYLQ 215
Query: 514 DLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
D+VP C + +G KA +L + I+Y+Q L
Sbjct: 216 DIVPGCNK--VTG----KAGMLDEIINYVQCL 241
>At4g30980.1 68417.m04397 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 310
Score = 41.9 bits (94), Expect = 5e-04
Identities = 28/95 (29%), Positives = 49/95 (51%)
Frame = +1
Query: 325 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYD 504
GS G Q Q+ ++++ T K + + + + H+ AE+ RR+ I +
Sbjct: 100 GSGGQTQT--QSQATASATTGGATAQPQTKPKVRARRGQATDPHSIAERLRRERIAERMK 157
Query: 505 SLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
SLQ+LVP +G K KA++L + IDY+++L
Sbjct: 158 SLQELVP-------NGNKTDKASMLDEIIDYVKFL 185
>At2g24260.1 68415.m02898 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 350
Score = 40.7 bits (91), Expect = 0.001
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Frame = +1
Query: 304 PNMYPRCGSSGSIQNIH-QTPSSSNQNTEDEDDSGDNKA----SALSFKERRREA---HT 459
PN GS G + N QT + + +G A S + RR +A H+
Sbjct: 91 PNFQIPQGSGGGLMNQQGQTQTQTQPQASASTATGGTVAAPPQSRTKIRARRGQATDPHS 150
Query: 460 QAEQKRRDAIKKGYDSLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
AE+ RR+ I + +LQ+LVP G K KA++L + IDY+++L
Sbjct: 151 IAERLRRERIAERMKALQELVPN-------GNKTDKASMLDEIIDYVKFL 193
>At5g38860.1 68418.m04700 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 298
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/55 (38%), Positives = 33/55 (60%)
Frame = +1
Query: 445 REAHTQAEQKRRDAIKKGYDSLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
R H++ EQ+RR I + + SL D++P Q+D K KA+ L + I+YI +L
Sbjct: 35 RSKHSETEQRRRSKINERFQSLMDIIPQ-NQND---QKRDKASFLLEVIEYIHFL 85
>At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 302
Score = 39.9 bits (89), Expect = 0.002
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Frame = +1
Query: 367 SSNQNTEDEDDSGDNKASALSFKERRREA---HTQAEQKRRDAIKKGYDSLQDLVPTCQQ 537
S+ NTE + K + + RR EA H+ AE+ RR+ I K LQD+VP C +
Sbjct: 122 SNMSNTETSSEI--QKPDYIHVRARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNK 179
Query: 538 SDASGYKPSKAAVLQKSIDYIQYL 609
+G KA +L + I+Y+Q L
Sbjct: 180 --VTG----KAGMLDEIINYVQSL 197
>At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 304
Score = 39.9 bits (89), Expect = 0.002
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Frame = +1
Query: 367 SSNQNTEDEDDSGDNKASALSFKERRREA---HTQAEQKRRDAIKKGYDSLQDLVPTCQQ 537
S+ NTE + K + + RR EA H+ AE+ RR+ I K LQD+VP C +
Sbjct: 122 SNMSNTETSSEI--QKPDYIHVRARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNK 179
Query: 538 SDASGYKPSKAAVLQKSIDYIQYL 609
+G KA +L + I+Y+Q L
Sbjct: 180 --VTG----KAGMLDEIINYVQSL 197
>At5g61270.1 68418.m07689 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 366
Score = 38.7 bits (86), Expect = 0.005
Identities = 30/139 (21%), Positives = 64/139 (46%), Gaps = 1/139 (0%)
Frame = +1
Query: 367 SSNQNTEDEDDSGDNKASALSFKERRREA-HTQAEQKRRDAIKKGYDSLQDLVPTCQQSD 543
S Q+TE ++ +A + + R A H ++E++RRD I + +LQ L+PT ++D
Sbjct: 141 SETQDTEGDEQETRGEAGRSNGRRGRAAAIHNESERRRRDRINQRMRTLQKLLPTASKAD 200
Query: 544 ASGYKPSKAAVLQKSIDYIQYLLXXXXXXXXXXNALRKDVVALRIMQANYEQIVKAQHSV 723
K ++L I++++ L N L + ++ ++ ++ Q
Sbjct: 201 -------KVSILDDVIEHLKQLQAQVQFMSLRAN-LPQQMMIPQLPPPQSVLSIQHQQQQ 252
Query: 724 PGLNEQRLTDQDKFQVGIM 780
+Q+ Q +FQ+ ++
Sbjct: 253 QQQQQQQQQQQQQFQMSLL 271
>At4g36930.1 68417.m05235 basic helix-loop-helix (bHLH) protein
SPATULA (SPT) identical to SPATULA (SPT) GI:11245493
from [Arabidopsis thaliana]
Length = 373
Score = 38.7 bits (86), Expect = 0.005
Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Frame = +1
Query: 325 GSSGSIQNIHQTPSSSN-QNTEDEDDSGDNKASALSFKERRR--EAHTQAEQKRRDAIKK 495
G+SG+ + + S + DE S + S+ S +R R E H +E++RR I +
Sbjct: 156 GASGNETDEYDCESEEGGEAVVDEAPSSKSGPSSRSSSKRCRAAEVHNLSEKRRRSRINE 215
Query: 496 GYDSLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
+LQ L+P ++D KA++L ++I+Y++ L
Sbjct: 216 KMKALQSLIPNSNKTD-------KASMLDEAIEYLKQL 246
>At4g27120.2 68417.m03898 expressed protein
Length = 298
Score = 38.7 bits (86), Expect = 0.005
Identities = 20/64 (31%), Positives = 38/64 (59%)
Frame = +1
Query: 325 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYD 504
G+S S N+ + S S EDED++G +A A KE++R+ +A+++ +A ++ +
Sbjct: 64 GASSSTSNVQENGSGSED--EDEDEAGGTQARASKKKEKKRQ-EREAQRQAEEATRESRN 120
Query: 505 SLQD 516
+ QD
Sbjct: 121 TKQD 124
>At4g27120.1 68417.m03897 expressed protein
Length = 298
Score = 38.7 bits (86), Expect = 0.005
Identities = 20/64 (31%), Positives = 38/64 (59%)
Frame = +1
Query: 325 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYD 504
G+S S N+ + S S EDED++G +A A KE++R+ +A+++ +A ++ +
Sbjct: 64 GASSSTSNVQENGSGSED--EDEDEAGGTQARASKKKEKKRQ-EREAQRQAEEATRESRN 120
Query: 505 SLQD 516
+ QD
Sbjct: 121 TKQD 124
>At1g68920.2 68414.m07888 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 485
Score = 38.7 bits (86), Expect = 0.005
Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
Frame = +1
Query: 343 QNIHQTPSS----SNQNTEDEDDSGDN-KASALSFKERRREA---HTQAEQKRRDAIKKG 498
+N Q+P+S SN + S D K + + RR +A H+ AE+ RR+ I +
Sbjct: 268 RNDEQSPNSPGKKSNSGKQQGKQSSDPPKDGYIHVRARRGQATNSHSLAERVRREKISER 327
Query: 499 YDSLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
LQDLVP C + +G KA +L + I+Y+Q L
Sbjct: 328 MKFLQDLVPGCNK--VTG----KAVMLDEIINYVQSL 358
>At1g68920.1 68414.m07887 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 486
Score = 38.7 bits (86), Expect = 0.005
Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
Frame = +1
Query: 343 QNIHQTPSS----SNQNTEDEDDSGDN-KASALSFKERRREA---HTQAEQKRRDAIKKG 498
+N Q+P+S SN + S D K + + RR +A H+ AE+ RR+ I +
Sbjct: 269 RNDEQSPNSPGKKSNSGKQQGKQSSDPPKDGYIHVRARRGQATNSHSLAERVRREKISER 328
Query: 499 YDSLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
LQDLVP C + +G KA +L + I+Y+Q L
Sbjct: 329 MKFLQDLVPGCNK--VTG----KAVMLDEIINYVQSL 359
>At1g10120.1 68414.m01141 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 301
Score = 38.3 bits (85), Expect = 0.006
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 3/101 (2%)
Frame = +1
Query: 316 PRCGSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREA---HTQAEQKRRDA 486
P+ G+ S + S N E K + + + RR +A H+ AE+ RR+
Sbjct: 103 PQRGNDQSQKKHKNDQSKETVNKESSQSEEAPKENYIHMRARRGQATNSHSLAERVRREK 162
Query: 487 IKKGYDSLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
I + LQ+LVP C + KA +L + I+Y+Q L
Sbjct: 163 ISERMRLLQELVPGCNKI------TGKAVMLDEIINYVQSL 197
>At3g07340.1 68416.m00875 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 456
Score = 37.9 bits (84), Expect = 0.008
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 9/100 (9%)
Frame = +1
Query: 337 SIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKE------RRREA---HTQAEQKRRDAI 489
S + I + S + + +++GD S +K+ RR +A H+ AE+ RR+ I
Sbjct: 221 SSKEIEEKEDSDPKRCKKSEENGDKTKSIDPYKDYIHVRARRGQATDSHSLAERVRREKI 280
Query: 490 KKGYDSLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
+ LQDLVP C + +G KA +L + I+Y+Q L
Sbjct: 281 SERMKLLQDLVPGCNK--VTG----KALMLDEIINYVQSL 314
>At4g34530.1 68417.m04907 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 335
Score = 37.5 bits (83), Expect = 0.011
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Frame = +1
Query: 325 GSSGSIQNI-HQTPSSSNQNTEDEDDSGDN--KASALSFKERRREA---HTQAEQKRRDA 486
GS+ SI+ + H+ N + D K + + RR +A H+ AE+ RR+
Sbjct: 134 GSTKSIKKMKHKAKKEENNFSNDSSKVTKELEKTDYIHVRARRGQATDSHSIAERVRREK 193
Query: 487 IKKGYDSLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
I + LQDLVP C + KA +L + I+Y+Q L
Sbjct: 194 ISERMKFLQDLVPGCDKI------TGKAGMLDEIINYVQSL 228
>At1g03040.1 68414.m00276 basic helix-loop-helix (bHLH) family
protein component of the pyruvate dehydrogenase complex
E3, contains PF|00010 helix-loop-helix DNA-binding
domain. ESTs gb|T45640 and gb|T22783 come from this gene
Length = 302
Score = 37.5 bits (83), Expect = 0.011
Identities = 19/54 (35%), Positives = 35/54 (64%)
Frame = +1
Query: 448 EAHTQAEQKRRDAIKKGYDSLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
+ H+ AE+ RR+ I + SLQ+LVPT ++D +AA++ + +DY+++L
Sbjct: 153 DPHSIAERLRRERIAERIRSLQELVPTVNKTD-------RAAMIDEIVDYVKFL 199
>At4g37850.1 68417.m05354 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 328
Score = 37.1 bits (82), Expect = 0.015
Identities = 22/79 (27%), Positives = 43/79 (54%)
Frame = +1
Query: 373 NQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCQQSDASG 552
+Q +++ + G +A S + + H AE+KRR+ + + + +L LVP ++ D
Sbjct: 126 HQKSDEFNRKGTKRAQPFSRNQSNAQDHIIAERKRREKLTQRFVALSALVPGLKKMD--- 182
Query: 553 YKPSKAAVLQKSIDYIQYL 609
KA+VL ++ +I+YL
Sbjct: 183 ----KASVLGDALKHIKYL 197
>At4g28800.1 68417.m04118 bHLH family protein contains Pfam profile:
PF00010 helix-loop-helix DNA-binding domain
Length = 478
Score = 37.1 bits (82), Expect = 0.015
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Frame = +1
Query: 361 PSSSNQNTEDEDDSGDNKASALSFKERRR--EAHTQAEQKRRDAIKKGYDSLQDLVPTCQ 534
P++ ++ E+ G +A + ++R R E H AE++RR+ I + +LQ L+P C
Sbjct: 227 PATESKLKAREETHGTEEARGSTSRKRSRTAEMHNLAERRRREKINEKMKTLQQLIPRCN 286
Query: 535 QSDA 546
+ ++
Sbjct: 287 KVES 290
>At5g08130.1 68418.m00948 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 409
Score = 36.3 bits (80), Expect = 0.026
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = +1
Query: 445 REAHTQAEQKRRDAIKKGYDSLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
R H+ EQ+RR I + L+ L+P Q K KA+ L + I+YIQ+L
Sbjct: 158 RSKHSATEQRRRSKINDRFQMLRQLIPNSDQ------KRDKASFLLEVIEYIQFL 206
>At4g28790.2 68417.m04116 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 340
Score = 36.3 bits (80), Expect = 0.026
Identities = 21/59 (35%), Positives = 32/59 (54%)
Frame = +1
Query: 373 NQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCQQSDAS 549
NQ TE+ DS +K S R H +E++RR I + +LQ+L+P C ++D S
Sbjct: 261 NQGTEEARDSTSSKRS------RAAIMHKLSERRRRQKINEMMKALQELLPRCTKTDRS 313
>At4g28790.1 68417.m04117 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 413
Score = 36.3 bits (80), Expect = 0.026
Identities = 21/59 (35%), Positives = 32/59 (54%)
Frame = +1
Query: 373 NQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCQQSDAS 549
NQ TE+ DS +K S R H +E++RR I + +LQ+L+P C ++D S
Sbjct: 261 NQGTEEARDSTSSKRS------RAAIMHKLSERRRRQKINEMMKALQELLPRCTKTDRS 313
>At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family
protein similar to A. thaliana putative protein
F6I18.110, GenBank accession number 2980768
Length = 310
Score = 36.3 bits (80), Expect = 0.026
Identities = 18/54 (33%), Positives = 35/54 (64%)
Frame = +1
Query: 448 EAHTQAEQKRRDAIKKGYDSLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
+ H+ AE+ RR+ I + +LQ+LVPT ++D +AA++ + +DY+++L
Sbjct: 155 DPHSIAERLRRERIAERIRALQELVPTVNKTD-------RAAMIDEIVDYVKFL 201
>At2g22750.1 68415.m02697 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 304
Score = 36.3 bits (80), Expect = 0.026
Identities = 21/69 (30%), Positives = 39/69 (56%)
Frame = +1
Query: 403 GDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCQQSDASGYKPSKAAVLQ 582
G +A +L+ + + H AE+KRR+ + + + +L L+P ++ D KA+VL
Sbjct: 110 GTKRAQSLTRSQSNAQDHILAERKRREKLTQRFVALSALIPGLKKMD-------KASVLG 162
Query: 583 KSIDYIQYL 609
+I +I+YL
Sbjct: 163 DAIKHIKYL 171
>At1g59640.2 68414.m06708 basic helix-loop-helix (bHLH) family
protein
Length = 343
Score = 36.3 bits (80), Expect = 0.026
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Frame = +1
Query: 367 SSNQNTEDEDDSGDNKASALSFKERRREA---HTQAEQKRRDAIKKGYDSLQDLVPTCQQ 537
S TE + + + + RR +A H+ AE+ RR+ I + LQDLVP C +
Sbjct: 115 SLGTETEQKKQQMEPTKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNK 174
Query: 538 SDASGYKPSKAAVLQKSIDYIQYL 609
KA VL + I+YIQ L
Sbjct: 175 ------VIGKALVLDEIINYIQSL 192
>At1g59640.1 68414.m06707 basic helix-loop-helix (bHLH) family
protein
Length = 264
Score = 36.3 bits (80), Expect = 0.026
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Frame = +1
Query: 367 SSNQNTEDEDDSGDNKASALSFKERRREA---HTQAEQKRRDAIKKGYDSLQDLVPTCQQ 537
S TE + + + + RR +A H+ AE+ RR+ I + LQDLVP C +
Sbjct: 115 SLGTETEQKKQQMEPTKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNK 174
Query: 538 SDASGYKPSKAAVLQKSIDYIQYL 609
KA VL + I+YIQ L
Sbjct: 175 ------VIGKALVLDEIINYIQSL 192
>At5g58010.1 68418.m07258 basic helix-loop-helix (bHLH) family
protein bHLH transcription factor GBOF-1, Tulipa
gesneriana, EMBL:AF185269; contains Pfam profile
PF00010: Helix-loop-helix DNA-binding domain
Length = 297
Score = 35.5 bits (78), Expect = 0.045
Identities = 19/54 (35%), Positives = 34/54 (62%)
Frame = +1
Query: 448 EAHTQAEQKRRDAIKKGYDSLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
+ H+ AE+ RR+ I + SLQ+LVP ++D KA++L + I+Y+++L
Sbjct: 108 DPHSIAERLRRERIAERMKSLQELVPNTNKTD-------KASMLDEIIEYVRFL 154
>At5g62610.1 68418.m07857 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 281
Score = 35.1 bits (77), Expect = 0.060
Identities = 20/54 (37%), Positives = 31/54 (57%)
Frame = +1
Query: 448 EAHTQAEQKRRDAIKKGYDSLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
+ H+ AE+ RR+ I + +LQD++P C + KA VL + I+YIQ L
Sbjct: 162 DRHSLAERARREKISEKMTALQDIIPGCNKI------IGKALVLDEIINYIQSL 209
>At1g73830.1 68414.m08548 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 261
Score = 35.1 bits (77), Expect = 0.060
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Frame = +1
Query: 346 NIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREA---HTQAEQKRRDAIKKGYDSLQD 516
NI +SS + ++ + + + + RR +A H+ AE+ RR I + LQD
Sbjct: 119 NISTKNNSSRRGKRSKNREEEKEREVVHVRARRGQATDSHSIAERVRRGKINERLKCLQD 178
Query: 517 LVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
+VP C ++ A +L + I+Y+Q L
Sbjct: 179 IVPGCYKT------MGMATMLDEIINYVQSL 203
>At1g18400.1 68414.m02298 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 260
Score = 34.7 bits (76), Expect = 0.079
Identities = 23/75 (30%), Positives = 39/75 (52%)
Frame = +1
Query: 385 EDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCQQSDASGYKPS 564
E+ED+ + + + ++H+ AE+ RR I + LQD+VP C + A G
Sbjct: 133 EEEDEKEREVVHVRARRGQATDSHSLAERVRRGKINERLRCLQDMVPGCYK--AMG---- 186
Query: 565 KAAVLQKSIDYIQYL 609
A +L + I+Y+Q L
Sbjct: 187 MATMLDEIINYVQSL 201
>At5g67110.1 68418.m08461 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 210
Score = 34.3 bits (75), Expect = 0.10
Identities = 24/96 (25%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Frame = +1
Query: 328 SSGSIQNIHQTPSSSNQNTE--DEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGY 501
S G++ ++ S + Q+ + SG + ++L + + H +E+KRR I +
Sbjct: 55 SGGAVSSVGYGVSETGQDKYAFEHKRSGAKQRNSLK-RNIDAQFHNLSEKKRRSKINEKM 113
Query: 502 DSLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
+LQ L+P ++D KA++L ++I+Y++ L
Sbjct: 114 KALQKLIPNSNKTD-------KASMLDEAIEYLKQL 142
>At5g48560.1 68418.m06005 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 498
Score = 34.3 bits (75), Expect = 0.10
Identities = 21/54 (38%), Positives = 33/54 (61%)
Frame = +1
Query: 448 EAHTQAEQKRRDAIKKGYDSLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
++H+ AE+ RR+ I + LQDLVP C + +G KA +L + I+Y+Q L
Sbjct: 310 DSHSLAERVRREKIGERMKLLQDLVPGCNK--VTG----KALMLDEIINYVQSL 357
>At3g57800.2 68416.m06443 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain; supported by full-length cDNA
gi:20127059
Length = 379
Score = 34.3 bits (75), Expect = 0.10
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Frame = +1
Query: 304 PNMYPRCGSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREA---HTQAEQK 474
PN R G + ++ + N+++E+ + K + + RR +A H+ AE+
Sbjct: 167 PNQNNRNGKRKDFEKKGKSSTKKNKSSEENE-----KLPYVHVRARRGQATDSHSLAERA 221
Query: 475 RRDAIKKGYDSLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
RR+ I LQ+LVP C + + A VL + I+++Q L
Sbjct: 222 RREKINARMKLLQELVPGCDKIQGT------ALVLDEIINHVQSL 260
>At2g31210.1 68415.m03811 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain; PMID: 12679534
Length = 428
Score = 34.3 bits (75), Expect = 0.10
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 11/120 (9%)
Frame = +1
Query: 283 FHYN-N*YPNMYPRCGSSGSIQNI--HQTPSSSNQNTEDEDDSGDNKASALSF-KERRRE 450
FH N P + P SG + I + T N DE+++ + + F KE RR+
Sbjct: 147 FHLNLPPQPPLIPSNDYSGYLLGIDTNTTTQRDESNVGDENNNAQFDSGIIEFSKEIRRK 206
Query: 451 AHTQ-------AEQKRRDAIKKGYDSLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
+ E++RR + + Y++L+ L+P+ + D +A++LQ IDYI L
Sbjct: 207 GRGKRKNKPFTTERERRCHLNERYEALKLLIPSPSKGD-------RASILQDGIDYINEL 259
>At5g50915.2 68418.m06314 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 286
Score = 33.9 bits (74), Expect = 0.14
Identities = 20/54 (37%), Positives = 34/54 (62%)
Frame = +1
Query: 448 EAHTQAEQKRRDAIKKGYDSLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
++H+ AE+ RR+ I + +LQ+LVP C + +G KA +L + I+Y+Q L
Sbjct: 145 DSHSLAERVRREKISERMRTLQNLVPGCDK--VTG----KALMLDEIINYVQTL 192
>At5g50915.1 68418.m06313 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 286
Score = 33.9 bits (74), Expect = 0.14
Identities = 20/54 (37%), Positives = 34/54 (62%)
Frame = +1
Query: 448 EAHTQAEQKRRDAIKKGYDSLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
++H+ AE+ RR+ I + +LQ+LVP C + +G KA +L + I+Y+Q L
Sbjct: 145 DSHSLAERVRREKISERMRTLQNLVPGCDK--VTG----KALMLDEIINYVQTL 192
>At3g57800.1 68416.m06442 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain; supported by full-length cDNA
gi:20127059
Length = 426
Score = 33.5 bits (73), Expect = 0.18
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +1
Query: 304 PNMYPRCGSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREA---HTQAEQK 474
PN R G + ++ + N+++E+ + K + + RR +A H+ AE+
Sbjct: 167 PNQNNRNGKRKDFEKKGKSSTKKNKSSEENE-----KLPYVHVRARRGQATDSHSLAERA 221
Query: 475 RRDAIKKGYDSLQDLVPTCQQSDASGYK 558
RR+ I LQ+LVP C + G K
Sbjct: 222 RREKINARMKLLQELVPGCDKGTDFGGK 249
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 33.1 bits (72), Expect = 0.24
Identities = 15/77 (19%), Positives = 40/77 (51%)
Frame = +1
Query: 355 QTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCQ 534
++ + ++ ED+ + DNK+ ++ ++ H +++ ++++ KK + L+D +
Sbjct: 1072 ESENHKSKKKEDKKEHEDNKSMKKEEDKKEKKKHEESKSRKKEEDKKDMEKLEDQNSNKK 1131
Query: 535 QSDASGYKPSKAAVLQK 585
+ D + K S+ L K
Sbjct: 1132 KEDKNEKKKSQHVKLVK 1148
>At1g25330.1 68414.m03143 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 223
Score = 33.1 bits (72), Expect = 0.24
Identities = 21/54 (38%), Positives = 31/54 (57%)
Frame = +1
Query: 448 EAHTQAEQKRRDAIKKGYDSLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
++H+ AE+ RR+ I + LQDLVP C + A G A +L IDY++ L
Sbjct: 113 DSHSLAERVRREKINERLKCLQDLVPGCYK--AMG----MAVMLDVIIDYVRSL 160
>At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to
homeotic protein HAT 3.1 (GI:11994474) [Arabidopsis
thaliana]
Length = 723
Score = 32.7 bits (71), Expect = 0.32
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = +1
Query: 361 PSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDLVP-TCQQ 537
P N N DED S DN+ S T A + ++ K+G D ++D++
Sbjct: 377 PDCLNDNENDEDGSDDNEESENEDGSSDETEFTSASDEMIESFKEGKDIMKDVMALPSDD 436
Query: 538 SDASGYKP 561
S+ Y P
Sbjct: 437 SEDDDYDP 444
>At2g42300.1 68415.m05236 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 327
Score = 32.7 bits (71), Expect = 0.32
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Frame = +1
Query: 328 SSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREA---HTQAEQKRRDAIKKG 498
SSG + + SS + + +S +K + + RR +A H+ AE+ RR+ I
Sbjct: 153 SSGKRKEREKKVKSSTKKNKSSVES--DKLPYVHVRARRGQATDNHSLAERARREKINAR 210
Query: 499 YDSLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
LQ+LVP C + + A VL + I+++Q L
Sbjct: 211 MKLLQELVPGCDKIQGT------ALVLDEIINHVQTL 241
>At4g17880.1 68417.m02665 basic helix-loop-helix (bHLH) family
protein bHLH protein, Arabidopsis thaliana,
PATCHX:E255557
Length = 589
Score = 31.9 bits (69), Expect = 0.56
Identities = 22/85 (25%), Positives = 39/85 (45%)
Frame = +1
Query: 454 HTQAEQKRRDAIKKGYDSLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYLLXXXXXXX 633
H +AE++RR+ + + + SL+ +VP + D KA++L +I YI L
Sbjct: 417 HVEAERQRREKLNQRFYSLRAVVPNVSKMD-------KASLLGDAISYISELKSKLQKAE 469
Query: 634 XXXNALRKDVVALRIMQANYEQIVK 708
L+K + + N + VK
Sbjct: 470 SDKEELQKQIDVMNKEAGNAKSSVK 494
>At1g76180.1 68414.m08846 dehydrin (ERD14) identical to SP|P42763
Dehydrin ERD14 {Arabidopsis thaliana}
Length = 185
Score = 31.9 bits (69), Expect = 0.56
Identities = 17/71 (23%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +1
Query: 316 PRCGSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKK 495
P ++ +H++ SSS+ ++E+E G+ + K+ +++ T+ E K + KK
Sbjct: 63 PEVKHESLLEKLHRSDSSSSSSSEEEGSDGEKRKK----KKEKKKPTTEVEVKEEE--KK 116
Query: 496 GY-DSLQDLVP 525
G+ + L++ +P
Sbjct: 117 GFMEKLKEKLP 127
>At1g61660.2 68414.m06950 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 347
Score = 31.9 bits (69), Expect = 0.56
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Frame = +1
Query: 346 NIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKR------RDAIKKGYDS 507
N TP + ED+ + +A + S K R ++ + A++ R K ++
Sbjct: 227 NFVTTPQIISTRLEDKTKNLKTRAQSESLK-RAKDNESAAKKPRVTTPSPLPTFKVRKEN 285
Query: 508 LQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
L+D + + QQ + K A+VLQ++I+YI++L
Sbjct: 286 LRDQITSLQQLVSPFGKTDTASVLQEAIEYIKFL 319
>At1g61660.1 68414.m06949 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 393
Score = 31.9 bits (69), Expect = 0.56
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Frame = +1
Query: 346 NIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKR------RDAIKKGYDS 507
N TP + ED+ + +A + S K R ++ + A++ R K ++
Sbjct: 227 NFVTTPQIISTRLEDKTKNLKTRAQSESLK-RAKDNESAAKKPRVTTPSPLPTFKVRKEN 285
Query: 508 LQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
L+D + + QQ + K A+VLQ++I+YI++L
Sbjct: 286 LRDQITSLQQLVSPFGKTDTASVLQEAIEYIKFL 319
>At1g27740.1 68414.m03390 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 258
Score = 31.5 bits (68), Expect = 0.74
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Frame = +1
Query: 358 TPSSSNQNTED----EDDSGDNKASALSFKERRREAHTQAE-------QKRRDAIKKGYD 504
T SN N D + S D KAS S K + R A +KRR+ I +
Sbjct: 135 TVDESNTNWVDGQSLSNSSDDEKASVTSVKGKTRATKGTATDPQSLYARKRREKINERLK 194
Query: 505 SLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
+LQ+LVP +G K + +L++++ Y+++L
Sbjct: 195 TLQNLVP-------NGTKVDISTMLEEAVHYVKFL 222
>At1g01260.1 68414.m00043 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 590
Score = 31.5 bits (68), Expect = 0.74
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Frame = +1
Query: 394 DDSGDNKASALSFKER--RREA--HTQAEQKRRDAIKKGYDSLQDLVPTCQQSDASGYKP 561
D+SG+N+ + R EA H +AE++RR+ + + + +L+ +VP + D
Sbjct: 410 DESGNNRPRKRGRRPANGRAEALNHVEAERQRREKLNQRFYALRSVVPNISKMD------ 463
Query: 562 SKAAVLQKSIDYIQYL 609
KA++L ++ YI L
Sbjct: 464 -KASLLGDAVSYINEL 478
>At1g25310.1 68414.m03141 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 145
Score = 31.1 bits (67), Expect = 0.97
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +1
Query: 457 TQAEQKRRDAIKKGYDSLQDLVPTCQQSD 543
T ++KRR+ I++ ++L+++ P C QSD
Sbjct: 72 TLLKKKRRERIRRQLETLKEITPNCPQSD 100
>At3g29075.1 68416.m03637 glycine-rich protein
Length = 294
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +1
Query: 325 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYD 504
G G I++ + PS ED+ D G K S + + ++ + ++K++D K G +
Sbjct: 121 GYGGRIESDYVKPSYGGH--EDDGDDGHKKHSGKDYDDGDEKSKKKEKEKKKDKKKDGNN 178
Query: 505 SLQD 516
S D
Sbjct: 179 SEDD 182
>At2g44200.1 68415.m05500 expressed protein
Length = 493
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 352 HQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIK 492
HQ SSS Q ++ E+DSG+ S ++ H + ++ R ++
Sbjct: 191 HQKQSSSRQRSDSEEDSGEENNGRKSHHQKTSGTHDRHYERPRSDLE 237
>At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putative
(COX6b) nearly identical to subunit 6b of cytochrome c
oxidase [Arabidopsis thaliana] GI:6518353
Length = 191
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/73 (26%), Positives = 35/73 (47%)
Frame = +1
Query: 355 QTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCQ 534
QTPS S Q +++ D A + KE E TQAE+ + + K+ +++ V +
Sbjct: 8 QTPSLSEQYHLEKEVKQDTSAKPVEVKEVAPEVTTQAEEVKTEQAKE-ESPVEEAVSVVE 66
Query: 535 QSDASGYKPSKAA 573
+ S + ++ A
Sbjct: 67 EKSESAPESTEVA 79
>At5g46760.1 68418.m05760 basic helix-loop-helix (bHLH) family
protein
Length = 592
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +1
Query: 454 HTQAEQKRRDAIKKGYDSLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
H +AE++RR+ + + + SL+ +VP + D KA++L +I YI L
Sbjct: 416 HVEAERQRREKLNQRFYSLRAVVPNVSKMD-------KASLLGDAISYINEL 460
>At4g00870.1 68417.m00118 basic helix-loop-helix (bHLH) family
protein similar to the myc family of helix-loop-helix
transcription factors; contains Pfam profile PF00010:
Helix-loop-helix DNA-binding domain; PMID: 12679534
Length = 423
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Frame = +1
Query: 421 ALSFKERRREA---HTQAEQKRRDAIKKGYDSLQDLVPTCQQSDASGYKPSKAAVLQKSI 591
A + KE+ A H +AE++RR+ + + +L+ +VP + D KA++L ++
Sbjct: 236 AAATKEKHHPAVLSHVEAEKQRREKLNHRFYALRAIVPKVSRMD-------KASLLSDAV 288
Query: 592 DYIQYL 609
YI+ L
Sbjct: 289 SYIESL 294
>At2g46510.1 68415.m05796 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 566
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = +1
Query: 454 HTQAEQKRRDAIKKGYDSLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
H +AE++RR+ + + + +L+ +VP + D KA++L +I YI+ L
Sbjct: 396 HVEAERQRREKLNQRFYALRSVVPNISKMD-------KASLLGDAISYIKEL 440
>At1g63650.2 68414.m07202 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor (JAF13)
GB:AAC39455 [Petunia x hybrida]; contains Pfam profile:
PF00010 Helix-loop-helix DNA-binding domain
Length = 596
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/52 (26%), Positives = 31/52 (59%)
Frame = +1
Query: 454 HTQAEQKRRDAIKKGYDSLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
H +E+KRR+ + + + +L+ ++P+ + D K ++L +I+Y+Q L
Sbjct: 406 HALSEKKRREKLNERFMTLRSIIPSISKID-------KVSILDDTIEYLQDL 450
>At1g63650.1 68414.m07201 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor (JAF13)
GB:AAC39455 [Petunia x hybrida]; contains Pfam profile:
PF00010 Helix-loop-helix DNA-binding domain
Length = 596
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/52 (26%), Positives = 31/52 (59%)
Frame = +1
Query: 454 HTQAEQKRRDAIKKGYDSLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
H +E+KRR+ + + + +L+ ++P+ + D K ++L +I+Y+Q L
Sbjct: 406 HALSEKKRREKLNERFMTLRSIIPSISKID-------KVSILDDTIEYLQDL 450
>At5g43650.1 68418.m05335 basic helix-loop-helix (bHLH) family
protein similar to unknown protein (pir||T04030)
Length = 247
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/68 (25%), Positives = 36/68 (52%)
Frame = +1
Query: 406 DNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCQQSDASGYKPSKAAVLQK 585
+ K + ++ ++ R H E+ RR+ K+ Y +L L+P ++D K ++++K
Sbjct: 74 EEKKNTVAPEKERSRRHMLKERTRREKQKQSYLALHSLLPFATKND-------KNSIVEK 126
Query: 586 SIDYIQYL 609
++D I L
Sbjct: 127 AVDEIAKL 134
>At5g41315.1 68418.m05021 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain ;annotation temporarily based on
supporting cDNA gi|17224394|gb|AF246291.1|AF246291
Length = 637
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/52 (26%), Positives = 30/52 (57%)
Frame = +1
Query: 454 HTQAEQKRRDAIKKGYDSLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
H E+KRR+ + + + +L+ ++P+ + D K ++L +I+Y+Q L
Sbjct: 442 HAVLEKKRREKLNERFMTLRKIIPSINKID-------KVSILDDTIEYLQEL 486
>At5g24390.1 68418.m02875 RabGAP/TBC domain-containing protein
similar to GTPase activating protein [Yarrowia
lipolytica] GI:2370595; contains Pfam profile PF00566:
TBC domain
Length = 528
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/87 (21%), Positives = 38/87 (43%)
Frame = +1
Query: 346 NIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDLVP 525
++H++ S NTED D S ++ H +E D+ + D +Q + P
Sbjct: 181 SVHESLISDKDNTEDIGYMSD--VSCTLDRDYNGSRHLNSESSDSDSSDEN-DYVQ-VAP 236
Query: 526 TCQQSDASGYKPSKAAVLQKSIDYIQY 606
+C+ D + PS + + D++ +
Sbjct: 237 SCEGKDENSTSPSSIYISRTKEDFVTW 263
>At2g40200.1 68415.m04943 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 254
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +1
Query: 406 DNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCQQSDASGYKPSKAAVLQK 585
D+ + E +H AE++RRD I +L+ LVP + D KAA+L
Sbjct: 51 DDCVGGIEKAESLSRSHRLAEKRRRDRINSHLTALRKLVPNSDKLD-------KAALLAT 103
Query: 586 SIDYIQYL 609
I+ ++ L
Sbjct: 104 VIEQVKEL 111
>At2g14760.1 68415.m01667 basic helix-loop-helix protein / bHLH
protein contains Pfam profile PF00010: Helix-loop-helix
DNA-binding domain; PMID: 12679534; putative bHLH084
transcription factor
Length = 328
Score = 29.1 bits (62), Expect = 3.9
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Frame = +1
Query: 391 EDDSGDNKASALSFKERR-REAHTQAE----QKRRDAIKKGYDSLQDLVPTCQQSDASGY 555
++D D+KA L+ K R R A T + +KRR+ I + LQ LVP G
Sbjct: 222 KEDGEDSKALNLNGKTRASRGAATDPQSLYARKRRERINERLRILQHLVPN-------GT 274
Query: 556 KPSKAAVLQKSIDYIQYL 609
K + +L++++ Y+++L
Sbjct: 275 KVDISTMLEEAVQYVKFL 292
>At5g63720.1 68418.m07998 hypothetical protein
Length = 492
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +1
Query: 355 QTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQD 516
QTPS++ +EDE+ S + S + E TQAE + Y D
Sbjct: 272 QTPSATGSESEDEEVSTSQEYSGETGSSSGSEWETQAENDTESKSESSYPPQND 325
>At5g37800.1 68418.m04552 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 307
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/82 (24%), Positives = 35/82 (42%)
Frame = +1
Query: 364 SSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCQQSD 543
+ N + SG N ++ + A + RR+ I + LQ+LVP
Sbjct: 182 TGENTQLSKKPSSGTNGKIKPKATTSPKDPQSLAAKNRRERISERLKVLQELVPN----- 236
Query: 544 ASGYKPSKAAVLQKSIDYIQYL 609
G K +L+K+I Y+++L
Sbjct: 237 --GTKVDLVTMLEKAIGYVKFL 256
>At4g01720.1 68417.m00223 WRKY family transcription factor similar
to wild oat DNA-binding protein ABF2, GenBank accession
number Z48431
Length = 489
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/76 (23%), Positives = 29/76 (38%)
Frame = +1
Query: 325 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYD 504
GSSG + S ++ D DD + S L + R + D + + Y+
Sbjct: 69 GSSGFNDGLGLVNSCHGTSSNDGDDKTKTQISRLKLELERLHEENHKLKHLLDEVSESYN 128
Query: 505 SLQDLVPTCQQSDASG 552
LQ V +Q+ G
Sbjct: 129 DLQRRVLLARQTQVEG 144
>At3g30725.1 68416.m03909 expressed protein ; expression supported
by MPSS
Length = 111
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +1
Query: 352 HQTPSSSNQNT--EDEDDSGDNKASALS 429
HQ PSSS+ N ++EDD GD A ++
Sbjct: 39 HQKPSSSSNNNHMDEEDDVGDKDAKPIT 66
>At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1189
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -3
Query: 822 VVCRYRFK*FKQLVHYTHLKFVLVRQPLLIQTRYGMLSFNNLFIICLH 679
+ C + K K L + KFV VRQ L + ++SF+N I +H
Sbjct: 490 IACFFNGKEIKILEEHLAKKFVEVRQRLNVLAEKSLISFSNWGTIEMH 537
>At4g16430.1 68417.m02487 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 467
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = +1
Query: 442 RREA--HTQAEQKRRDAIKKGYDSLQDLVPTCQQSDASGYKPSKAAVLQKSIDYI 600
R EA H +AE++RR+ + + + +L+ +VP + D KA++L +I YI
Sbjct: 315 REEALNHVEAERQRREKLNQRFYALRAVVPNISKMD-------KASLLADAITYI 362
>At3g30775.1 68416.m03933 proline oxidase, mitochondrial / osmotic
stress-responsive proline dehydrogenase (POX) (PRO1)
(ERD5) nearly identical to SP|P92983 Proline oxidase,
mitochondrial precursor (EC 1.5.3.-) (Osmotic stress-
induced proline dehydrogenase) [Arabidopsis thaliana];
identical to cDNA proline oxidase precursor GI:1817543
Length = 499
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = +1
Query: 463 AEQKRRDAIKKGYDSLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQY 606
AE++R ++ + +Q++ CQ+S+ ++ +LQ +IDY+ Y
Sbjct: 252 AEEERE--LEAAHGRIQEICRKCQESNVPLLIDAEDTILQPAIDYMAY 297
>At2g21940.2 68415.m02607 shikimate kinase, putative similar to
shikimate kinase precursor from Lycopersicon esculentum
[SP|Q00497]; contains Pfam shikimate kinase domain
PF01202
Length = 304
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 9/54 (16%)
Frame = +1
Query: 394 DDSGDNKASALSFK------ERRREAHTQAEQK---RRDAIKKGYDSLQDLVPT 528
D+SGD A +++FK + R EA+T A + A K+GY ++ DL PT
Sbjct: 226 DESGD--AYSVAFKRLSAIWDERGEAYTNANARVSLENIAAKRGYKNVSDLTPT 277
>At2g21940.1 68415.m02606 shikimate kinase, putative similar to
shikimate kinase precursor from Lycopersicon esculentum
[SP|Q00497]; contains Pfam shikimate kinase domain
PF01202
Length = 303
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 9/54 (16%)
Frame = +1
Query: 394 DDSGDNKASALSFK------ERRREAHTQAEQK---RRDAIKKGYDSLQDLVPT 528
D+SGD A +++FK + R EA+T A + A K+GY ++ DL PT
Sbjct: 225 DESGD--AYSVAFKRLSAIWDERGEAYTNANARVSLENIAAKRGYKNVSDLTPT 276
>At5g38710.1 68418.m04682 proline oxidase, putative / osmotic
stress-responsive proline dehydrogenase, putative
similar to proline oxidase, mitochondrial precursor
(Osmotic stress- induced proline dehydrogenase)
[Arabidopsis thaliana] SWISS-PROT:P92983
Length = 476
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +1
Query: 487 IKKGYDSLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQY 606
++K ++ L+ + CQ+S+ ++ +LQ +IDY+ Y
Sbjct: 237 LEKAHERLKSVCLRCQESNVPLLIDAEDTILQPAIDYMAY 276
>At5g23240.1 68418.m02719 DNAJ heat shock N-terminal
domain-containing protein low similarity to SP|O34136
Chaperone protein dnaJ (40 kDa heat shock chaperone
protein) (HSP40) {Deinococcus proteolyticus}; contains
Pfam profile PF00226: DnaJ domain
Length = 465
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 472 KRRDAIKKGYDSLQDLVPTCQQSDASGYKPSKAAVLQKSIDY 597
KR+ A+ LQD+V +Q+D SG K + DY
Sbjct: 299 KRKKAVDPDIRKLQDVVAAMKQADQSGRTKEKGSAYLLGEDY 340
>At5g16500.1 68418.m01928 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 636
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +1
Query: 340 IQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAE 468
+++IH + S +Q+ +DD+G++ S+L E + E H ++
Sbjct: 593 LEHIHSS-KSEDQSVYSDDDAGESGESSLHRIEAKEEEHISSD 634
>At4g29930.1 68417.m04258 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 254
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +1
Query: 463 AEQKRRDAIKKGYDSLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYLL 612
+E+ RR + + +L+ +VP + D KA+V++ SIDY+Q L+
Sbjct: 58 SERNRRQKLNQRLFALRSVVPNISKLD-------KASVIKDSIDYMQELI 100
>At3g42140.1 68416.m04327 hypothetical protein
Length = 273
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +1
Query: 274 LLKFHYNN*YPNMYPRCGSSGSIQNIHQTPSSSNQ--NTEDEDDSGDNKAS 420
+LKF Y N CG + + P+S NQ + +D+DD DN A+
Sbjct: 145 VLKFQYEK-LKNFCTTCGMLS--HDASECPTSGNQGPHADDDDDDDDNDAN 192
>At3g21480.1 68416.m02710 transcription activation
domain-interacting protein-related contains weak
similarity to Pax transcription activation domain
interacting protein PTIP (GI:4336734) [Mus musculus]
Length = 1045
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 373 NQNTEDEDDSGDNKASALSFKERRREAHTQAE 468
N + D DDSG + LS +E R++A+ + +
Sbjct: 128 NSDLSDSDDSGSKAETVLSSEENRQDANEKVK 159
>At1g66470.1 68414.m07551 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 298
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +1
Query: 445 REAHTQAEQKRRDAIKKGYDSLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
++ + A + RR+ I + LQ+LVP G K +L+K+I Y+++L
Sbjct: 203 KDPQSLAAKNRRERISERLKILQELVPN-------GTKVDLVTMLEKAISYVKFL 250
>At1g32640.1 68414.m04026 basic helix-loop-helix (bHLH) protein
(RAP-1) identical to bHLH protein GB:CAA67885 GI:1465368
from [Arabidopsis thaliana]
Length = 623
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = +1
Query: 454 HTQAEQKRRDAIKKGYDSLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 609
H +AE++RR+ + + + +L+ +VP + D KA++L +I YI L
Sbjct: 453 HVEAERQRREKLNQRFYALRAVVPNVSKMD-------KASLLGDAIAYINEL 497
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +1
Query: 364 SSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDL 519
SS +++ D DD D + KER R + KRR +K DS D+
Sbjct: 56 SSDSEDDYDRDD--DEEREKRKEKERERRRRDKDRVKRRSERRKSSDSEDDV 105
>At1g10610.1 68414.m01202 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 421
Score = 27.9 bits (59), Expect = 9.1
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
Frame = +1
Query: 313 YPRCGSSGSIQNIHQTPSSSNQNTEDE--DDSGDNKASA-LSFKERRREAHTQAEQKRRD 483
YP S I QTP +D ++ D+KA+ L E + + +E+KRR+
Sbjct: 216 YPNA-SCVEILREEQTPCLIMNKEKDVVVQNANDSKANKKLLPTENFKSKNLHSERKRRE 274
Query: 484 AIKKGYDSLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYLL 612
I + L+ +VP K +K + ++DYI LL
Sbjct: 275 RINQAMYGLRAVVPKIT-------KLNKIGIFSDAVDYINELL 310
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,489,837
Number of Sequences: 28952
Number of extensions: 318263
Number of successful extensions: 1367
Number of sequences better than 10.0: 94
Number of HSP's better than 10.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1354
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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