Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_G19
         (466 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.4  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   5.6  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   7.4  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   7.4  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   7.4  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    21   7.4  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   7.4  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   7.4  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +1

Query: 103  PTLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTV 231
            P  K + ++     + S   P TT   +T T  STT   T TV
Sbjct: 1157 PGHKPSTSSWQKPTKPSYRPPSTTNHWQTKTTTSTTTRPTTTV 1199


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 144 PYIVNPPKDYNPNGNGYE 197
           P+IV  P++ NP+   Y+
Sbjct: 192 PFIVRVPEEDNPHAKLYD 209


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 95  GYGQRSRKRLRTY*QPPVH 151
           GYG     +L ++  PP+H
Sbjct: 80  GYGNYYHPQLHSHHGPPIH 98


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 95  GYGQRSRKRLRTY*QPPVH 151
           GYG     +L ++  PP+H
Sbjct: 80  GYGNYYHPQLHSHHGPPIH 98


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 95  GYGQRSRKRLRTY*QPPVH 151
           GYG     +L ++  PP+H
Sbjct: 80  GYGNYYHPQLHSHHGPPIH 98


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 95  GYGQRSRKRLRTY*QPPVH 151
           GYG     +L ++  PP+H
Sbjct: 80  GYGNYYHPQLHSHHGPPIH 98


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +1

Query: 16  NFNIFACDNS*SYKNEILHDFRPRLC 93
           ++NIFACD    +    +   R  +C
Sbjct: 49  HYNIFACDGCAGFFKRSIRRNRQYVC 74


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +1

Query: 16  NFNIFACDNS*SYKNEILHDFRPRLC 93
           ++NIFACD    +    +   R  +C
Sbjct: 49  HYNIFACDGCAGFFKRSIRRNRQYVC 74


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,432
Number of Sequences: 336
Number of extensions: 1946
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10721526
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)