Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_G19
(466 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 26 2.5
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch... 25 4.3
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 25 5.7
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac... 25 7.5
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 7.5
SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual 25 7.5
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 24 9.9
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 24 9.9
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 24 9.9
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 24 9.9
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 24 9.9
>SPAC29B12.10c |||OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 26.2 bits (55), Expect = 2.5
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = +1
Query: 88 LCWLWPTLKETATNLLTTARTSL-ILPKTTTLMETATNLSTTVHITWTV 231
LCW+WP K N L + L ILP T + N + W +
Sbjct: 361 LCWIWP--KNRVVNQLFGYNSGLGILPLTFDWQQVVYNSNPLASPWWVI 407
>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 505
Score = 25.4 bits (53), Expect = 4.3
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -3
Query: 302 LIHYFVINFLRYSLLPTASTRERGTVHVICTVVDRFVAVSIRVVVFG 162
L + ++ FL YSL P T + I + F ++ I + VFG
Sbjct: 364 LAGFILVMFLLYSLAPILFRMSSATFYNISLLTSDFWSLVIGIHVFG 410
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 25.0 bits (52), Expect = 5.7
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +3
Query: 108 AQGNGY-EPIDNRPYIVNPPK-DYNPNGNGYEPIDNGAYYVDRPP 236
++GN E I +R Y + N + GYEPI N A D PP
Sbjct: 569 SKGNSQKEIIASRDYCIGTASLCLNEDVMGYEPIPNWADVSDLPP 613
Score = 24.6 bits (51), Expect = 7.5
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +1
Query: 55 KNEILHDFRPRLCWLWPTLK--ETATNLLTTAR-TSLILPKTTT 177
K EI+H + R+C L+P + + L T R L LP+ +T
Sbjct: 209 KLEIIHPYYHRICTLFPQMNDWDKVVALKTLVRYARLTLPEPST 252
>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 446
Score = 24.6 bits (51), Expect = 7.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 91 RVEDENHEEFHFYMITSYHRR 29
++ED EEF++Y+ T Y R
Sbjct: 192 KIEDMEVEEFNYYITTLYQPR 212
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 24.6 bits (51), Expect = 7.5
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -3
Query: 152 DVRAVVNRFVAVSLSVG 102
+VR V NRFVAV L G
Sbjct: 1056 NVRRVTNRFVAVKLDCG 1072
>SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 24.6 bits (51), Expect = 7.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 88 LCWLWPTLKETATNLLTTARTS 153
+ W W TL TA +L+TA S
Sbjct: 1 MIWFWSTLLVTAIAVLSTANES 22
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 24.2 bits (50), Expect = 9.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 132 IDNRPYIVNPPKDYNPNGNGYEPIDNGAY 218
+++ PY+ N D+N NGN P+ +Y
Sbjct: 370 VNSMPYLSNG--DHNNNGNTSSPVSRFSY 396
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 24.2 bits (50), Expect = 9.9
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = +3
Query: 168 DYNPNG-NGYEPIDNGAYYVD 227
DYN N N Y PI N Y+++
Sbjct: 119 DYNNNRKNFYPPIQNSTYFIN 139
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 24.2 bits (50), Expect = 9.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 8 PMTTLIFSPVITRDHIKMKFFMIFVLDS 91
P+T + ITR+ +K F +F LDS
Sbjct: 549 PLTLQQWHKWITRESVKRIAFFVFALDS 576
>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 738
Score = 24.2 bits (50), Expect = 9.9
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 111 QGNGYEPIDNRPYIVNPPKDYNPNGNGY 194
QG G + D PY ++P Y P G Y
Sbjct: 186 QGAGVKA-DINPYNLSPYSQYGPEGTAY 212
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 24.2 bits (50), Expect = 9.9
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = -3
Query: 287 VINFLRYSLLPTASTRERGTVHVI 216
++NFL++S +PT S ++R VH++
Sbjct: 1179 ILNFLKFSGIPTQS-KKRLEVHML 1201
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,549,745
Number of Sequences: 5004
Number of extensions: 31547
Number of successful extensions: 102
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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