Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_G19
         (466 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0471 + 34169562-34169892,34170121-34170347                       28   4.3  
04_03_0807 - 19860041-19860132,19860248-19860347,19861101-198611...    27   5.6  
07_01_0160 + 1126674-1126937,1128442-1129998                           27   9.8  

>03_06_0471 + 34169562-34169892,34170121-34170347
          Length = 185

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
 Frame = +3

Query: 123 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAY----YVDRPPFPGA 248
           Y P    P    PP  Y P+  GY P   GAY    Y  +P +P A
Sbjct: 56  YPPAGGYPGAQYPPSGYPPSQGGYPP---GAYPPSGYPQQPGYPPA 98


>04_03_0807 -
           19860041-19860132,19860248-19860347,19861101-19861170,
           19861344-19861407,19862531-19862704,19862805-19862946,
           19863413-19863544,19863616-19863705,19864093-19864152,
           19864227-19864343,19864441-19864611,19866909-19866984,
           19867156-19867223
          Length = 451

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +1

Query: 61  EILHDFRPRLCWLWPTLKETATNLLTTARTSLILPKTTTLMETATNLSTTVH 216
           +I+HD    L  LW   ++T T +LT +   LIL K    + T  +    +H
Sbjct: 159 KIMHDEGLSLVPLWDDQQQTVTGMLTASDFVLILRKLQRNIRTLGHEELEMH 210


>07_01_0160 + 1126674-1126937,1128442-1129998
          Length = 606

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = -1

Query: 256 PPRAPGKGGRS 224
           PPRAPG+GGR+
Sbjct: 53  PPRAPGRGGRA 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,978,792
Number of Sequences: 37544
Number of extensions: 214753
Number of successful extensions: 477
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)