Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_G19
         (466 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72110.1 68414.m08335 expressed protein                             28   2.7  
At2g33430.1 68415.m04097 plastid developmental protein DAG, puta...    28   3.6  
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3...    27   4.7  
At2g05540.1 68415.m00586 glycine-rich protein                          27   6.2  

>At1g72110.1 68414.m08335 expressed protein
          Length = 479

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 330 NSYEILKYIVNTLFRY*-FSKIFFTSHREHQGK 235
           N+  I++ I NTL  +  FS I  T H EH+GK
Sbjct: 41  NASTIVEGIKNTLINHPRFSSILVTGHGEHKGK 73


>At2g33430.1 68415.m04097 plastid developmental protein DAG,
           putative similar to DAG protein, chloroplast precursor
           [Garden snapdragon] SWISS-PROT:Q38732
          Length = 219

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 174 NPNGNGYEPIDNGAYYVDRPP 236
           N +G+ Y P+++G+ + DRPP
Sbjct: 52  NRSGSTYSPLNSGSNFSDRPP 72


>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
           almost identical to SC35-like splicing factor SCL30a
           GI:9843661 from [Arabidopsis thaliana]; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 262

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +2

Query: 101 GQRSRKRLRTY*QPPVHR*SSQRLQP*WKRLRTYRQRCILRGP 229
           G+RSR R R Y  PP  R  S+ + P  +  R  ++R   R P
Sbjct: 154 GRRSRSRSRGYNSPPAKRHQSRSVSP--QDRRYEKERSYSRSP 194


>At2g05540.1 68415.m00586 glycine-rich protein
          Length = 135

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 18/48 (37%), Positives = 19/48 (39%)
 Frame = +3

Query: 114 GNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPPFPGARGG 257
           G GY       Y  NP   Y   G GY   D G  Y +R    G RGG
Sbjct: 52  GGGYGGFPGGGYGGNPGGGYGNRGGGYRNRDGG--YGNRGGGYGNRGG 97


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,991,839
Number of Sequences: 28952
Number of extensions: 169540
Number of successful extensions: 402
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)