Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_G16
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    29   0.95 
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc...    27   3.8  
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2...    27   3.8  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    27   3.8  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       27   3.8  
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|...    27   3.8  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   3.8  
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    26   5.1  

>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
 Frame = +3

Query: 312 KGSIERTKSKLDKLFALRTV--LRKFYEFNDIRNEFKNLFSCSYILAMPKLTKENNRLFV 485
           KG++ R     D  F   ++    + Y F  I  EFK+ F   +I      T+     + 
Sbjct: 511 KGTLHRVSEVFDCWFESGSMPYASRHYPFERIE-EFKHGFPADFISEGVDQTR--GWFYT 567

Query: 486 LKVIGNEFFDKVPY 527
           L V+G   FDK PY
Sbjct: 568 LTVLGTLLFDKAPY 581


>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 536

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 486 LKVIGNEFF-DKVPYLDYYKIMIAYVEYFRMYDYS 587
           L VIG +F  D + YL  Y+     +E  +MYD+S
Sbjct: 223 LGVIGRQFQQDFLAYLKNYRHTYELIEKLKMYDFS 257


>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 3   LKRSRLSACSQCHLLHGSRFSSTKPC 80
           L+ +R + C +C    G RF+  KPC
Sbjct: 139 LRATRNTLCPRCQGRGGKRFAKEKPC 164


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = +3

Query: 345 DKLFALRTVLRKFYEFNDIRNEFKNLFSCSYILAMPKLTKENNRLFVLKVIGNEFFDKVP 524
           D L  +R +L K  +  D  N  +N+   + +L    L  + +  FV+    +E FD   
Sbjct: 269 DVLKQIRLILTKKEDDADAENHRRNVHWITKLLGEAALANDLSTSFVISEGSSELFDSSD 328

Query: 525 YL 530
           Y+
Sbjct: 329 YV 330


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 21/82 (25%), Positives = 36/82 (43%)
 Frame = +3

Query: 153 PEGTAQQXQMLYGYDEXKMNEAVDILEEWLKKQNHFLKKDFPRIYLETNIIGSKGSIERT 332
           P GTA        YD+ +M E +DI++  L  +    +  F  + L    +   GS    
Sbjct: 37  PSGTAMAEIAELTYDQNEMLEVMDIIDRRLNDKGKNWRHVFKSLSLLEYCL-HNGSENVV 95

Query: 333 KSKLDKLFALRTVLRKFYEFND 398
           +   D ++ + T LR+F   +D
Sbjct: 96  RWAKDNIYII-TTLREFVYVDD 116


>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 9   RSRLSACSQCHLLHGSRFSSTKPCXFIWVC 98
           R  +++ S C  LH   FS +  C F W C
Sbjct: 70  RRGIASLSVCVALHWIAFSCSVMCHFAWSC 99


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +3

Query: 192 YDEXKMNEA-VDILEEWLKKQNHFLKKDFPRIYLETNIIGSKGSI 323
           YD   +N++ ++    +++K    LKK+FP   ++T++ GS  S+
Sbjct: 59  YDSIILNDSGLERRYAFVQKLEQILKKEFPYKNIKTSLFGSTQSL 103


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 519 LYQRIRFQSL*VQKVYCFLWSI*A*LICMN 430
           L+   R +S   + V CFLWSI   L+C++
Sbjct: 199 LHHNYRGRSARFEWVVCFLWSIYICLLCLD 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,844,180
Number of Sequences: 5004
Number of extensions: 54783
Number of successful extensions: 147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)