Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_G16
         (759 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0195 + 23142830-23143714,23144288-23144314,23144657-231448...    31   1.00 
08_02_1605 - 28166338-28166418,28166496-28166567,28166655-281667...    30   1.7  
05_03_0194 + 9547626-9547715,9549235-9549311,9549493-9549564,954...    29   4.0  
12_01_0125 - 946480-947242,947283-947374,947462-947680,948059-94...    28   7.0  
11_01_0115 - 889159-889921,889962-890053,890141-890359,890738-89...    28   7.0  
08_02_0583 + 19006495-19006683,19006954-19007060,19007124-190072...    28   9.3  

>05_05_0195 + 23142830-23143714,23144288-23144314,23144657-23144866,
            23144976-23145242,23146290-23146376,23146495-23146553,
            23147166-23147768,23148063-23148192,23148570-23149100,
            23149636-23149743,23149911-23150456,23150957-23151079,
            23151494-23151709
          Length = 1263

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 254  SFPEERFSKNILGDEYNRKQRI 319
            S P+  F KN+LG  +N KQR+
Sbjct: 1060 SLPDNAFQKNVLGQNWNMKQRV 1081


>08_02_1605 - 28166338-28166418,28166496-28166567,28166655-28166771,
            28166846-28166956,28167077-28167252,28167340-28167421,
            28167662-28167808,28167887-28168252,28168558-28168741,
            28169104-28169213,28169452-28169508,28169589-28169600,
            28169899-28169961,28170010-28170057,28170166-28170246,
            28170326-28170389,28170661-28170686,28170782-28170868,
            28170942-28170969,28171194-28171255,28171364-28171576,
            28171667-28171774,28171948-28172022,28172136-28172249,
            28172597-28172644,28172688-28172767,28172974-28173049,
            28173287-28173427,28173685-28173762,28175100-28175204,
            28177061-28177147,28177287-28178579
          Length = 1463

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/89 (22%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
 Frame = +3

Query: 384  YEFNDIRNEFKNLFSCSYILAMPKLTKENNRLFVLKVIGNEFF-----DKVPYLDYYKIM 548
            +    + N+  N+F    +LA P+   + +   +L V+G+E+F     ++V   D++++ 
Sbjct: 825  FNMGAMENKSLNIFQSRLVLASPETATDGDYAAILGVVGHEYFHNWTGNRVTCRDWFQLT 884

Query: 549  IAY-VEYFRMYDYSD--GYRVVIDYRDIN 626
            +   +  FR  ++S   G R V    D++
Sbjct: 885  LKEGLTVFRDQEFSSDLGCRTVKRIADVS 913


>05_03_0194 +
           9547626-9547715,9549235-9549311,9549493-9549564,
           9549648-9549719,9550047-9550118,9550199-9550225,
           9550226-9550297,9550382-9550453,9550897-9550968,
           9551047-9551121,9551226-9551297,9551384-9551449,
           9551544-9551609,9551683-9551727,9551822-9551886,
           9551971-9552350,9552419-9552545,9552688-9552846,
           9552929-9553047,9553182-9553392,9553582-9553762,
           9553845-9553995,9554086-9554448
          Length = 901

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 25/100 (25%), Positives = 41/100 (41%)
 Frame = +3

Query: 294 TNIIGSKGSIERTKSKLDKLFALRTVLRKFYEFNDIRNEFKNLFSCSYILAMPKLTKENN 473
           TN++    S      +L K     T L++        N +  + SC +    P    +  
Sbjct: 99  TNLLSLGISFNNFSGQLPKELGNMTNLQQMITLQSFNNRY--IDSCGFSGPFPSTFSKLQ 156

Query: 474 RLFVLKVIGNEFFDKVPYLDYYKIMIAYVEYFRMYDYSDG 593
            L +L+   N+F  K+P  DY  IM   +E  R+ D  +G
Sbjct: 157 NLKILRSSDNDFTGKIP--DYLGIM-PKLEDIRIGDIVNG 193


>12_01_0125 -
           946480-947242,947283-947374,947462-947680,948059-949156
          Length = 723

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +3

Query: 294 TNIIGSKGSIERTKSKLDKLFALRTVLRKFYEFNDIRNEFKNLFSCSYILAMPKLTKE 467
           T+I  + GS+ ++K K+DK   LRT        +D+  E  +    S +   PK  K+
Sbjct: 341 TSIAAAAGSVMKSKVKVDKSTILRTQEAMARRLSDVTTELSSNDDDSSVDEKPKPRKK 398


>11_01_0115 -
           889159-889921,889962-890053,890141-890359,890738-891835
          Length = 723

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +3

Query: 294 TNIIGSKGSIERTKSKLDKLFALRTVLRKFYEFNDIRNEFKNLFSCSYILAMPKLTKE 467
           T+I  + GS+ ++K K+DK   LRT        +D+  E  +    S +   PK  K+
Sbjct: 341 TSIAAAAGSVMKSKVKVDKSTILRTQEAMARRLSDVTTELSSNDDDSSVDEKPKPRKK 398


>08_02_0583 +
           19006495-19006683,19006954-19007060,19007124-19007289,
           19007362-19007458,19008011-19008366
          Length = 304

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 381 FYEFNDIRNEFKNLFSCSYILAMPKLTKENNRLFVLKVI 497
           FY  ++ R + ++ +S  Y+L +  L    NR F L VI
Sbjct: 87  FYRLSNTREQIQSSYSSDYLLYVLPLLFNANRTFFLAVI 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,958,459
Number of Sequences: 37544
Number of extensions: 301593
Number of successful extensions: 783
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)