Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_G16
         (759 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19168| Best HMM Match : rve (HMM E-Value=3.9e-38)                   33   0.25 
SB_54349| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.77 
SB_58283| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_51339| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_16030| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_17315| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_19168| Best HMM Match : rve (HMM E-Value=3.9e-38)
          Length = 586

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
 Frame = +3

Query: 309 SKGSIERTKSKLDKLFALRTVLRKFYEFNDIRNEFKNLFSCSYILAMPKLTKENNRLFVL 488
           + G +ERT   ++K+  + TV     E ND++ EF+  F  +Y  + P  T      F L
Sbjct: 359 ANGLVERTNRTIEKILKIATV-----EKNDLQKEFRK-FLVAY-RSTPH-TSTGCTPFSL 410

Query: 489 KVIGNEFFDKVPYLDYYKIMIAYV------EY-FRMYDYSD 590
            + G E  +K+P LDY    I  V      EY  +M DY+D
Sbjct: 411 -MFGREMRNKLPQLDYSAAAIPEVARKRDMEYKLKMKDYAD 450


>SB_54349| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 971

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
 Frame = +3

Query: 309  SKGSIERTKSKLDKLFALRTVLRKFYEFNDIRNEFKNLFSCSYILAMPKLTKENNRLFVL 488
            + G IERT   ++K+  + TV +K     D++ EF+  F  +Y   +   T+     F L
Sbjct: 759  ANGLIERTNRIIEKILKIATVEKK-----DLQKEFRK-FLVAYRSTLHTSTRCTP--FSL 810

Query: 489  KVIGNEFFDKVPYLDYYKIMIAYV------EY-FRMYDYSD 590
             + G E  +K+P LDY    I  V      EY  +M DY+D
Sbjct: 811  -MFGREMRNKLPQLDYSAAAIPEVARERDMEYKLKMKDYAD 850


>SB_58283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 417

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
 Frame = +3

Query: 309 SKGSIERTKSKLDKLFALRTVLRKFYEFNDIRNEFKNLFSCSYILAMPKLTKENNRLFVL 488
           + G +ERT   ++K+  + TV +K     D++ EF+  F  +Y    P  T      F L
Sbjct: 253 ANGLVERTNRTIEKILKIATVEKK-----DLQTEFRK-FLVAY-RPTPH-TSTGCTPFSL 304

Query: 489 KVIGNEFFDKVPYLDYYKIMIAYV------EY-FRMYDYSD 590
            + G E  +K+P LDY    I  V      EY  +M DY+D
Sbjct: 305 -MFGREMKNKLPQLDYSAAAIPEVARERDMEYKLKMKDYAD 344


>SB_51339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 406

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 27/92 (29%), Positives = 44/92 (47%)
 Frame = +3

Query: 309 SKGSIERTKSKLDKLFALRTVLRKFYEFNDIRNEFKNLFSCSYILAMPKLTKENNRLFVL 488
           + G ++RT   ++K+  + TV +K     D++ EF+  F  +Y  + P  T      F L
Sbjct: 242 ASGLVDRTNRTIEKILKIATVEKK-----DLQKEFRK-FLVAY-RSTPH-TSTGCTPFSL 293

Query: 489 KVIGNEFFDKVPYLDYYKIMIAYVEYFRMYDY 584
            + G E  +K+P LDY    I  V   R  +Y
Sbjct: 294 -MFGREMRNKLPQLDYSAAAIPEVARERDMEY 324


>SB_16030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +3

Query: 393 NDIRNEFKNLFSCSYILAMPKLTKENNRLFVLKVIGNEFF---DKVPY 527
           + ++ E +N  SCS     P+   ++N L    + G EFF   + +PY
Sbjct: 91  SSLKEEKENALSCSQYFCYPERLSDSNYLLSRTLFGFEFFAVLNAIPY 138


>SB_17315| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 405

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +3

Query: 510 FDKV-PYLDYYKIMIAYVEYFRMYDYSDGYRVVIDYRD 620
           +D+V  Y DY ++M +Y +Y R+  Y D Y  V+ YRD
Sbjct: 122 YDRVMSYRDYDRVM-SYRDYERVVSYRD-YERVLYYRD 157



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = +3

Query: 489 KVIGNEFFDKV-PYLDYYKIMIAYVEYFRMYDYSDGYRVVIDYRDINIMNIIARLNL 656
           +V+    +D+V  Y DY ++ ++Y +Y R+  Y D Y  V+ YRD  +  +I  +++
Sbjct: 124 RVMSYRDYDRVMSYRDYERV-VSYRDYERVLYYRD-YERVLYYRDYVVSCLIVIISV 178


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,206,872
Number of Sequences: 59808
Number of extensions: 365416
Number of successful extensions: 936
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)