Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_G16
         (759 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80452-8|AAB37855.1|  244|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AF000262-10|AAN60530.1|  350|Caenorhabditis elegans Twik family ...    28   8.3  

>U80452-8|AAB37855.1|  244|Caenorhabditis elegans Hypothetical
           protein C16C8.13 protein.
          Length = 244

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 21/103 (20%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
 Frame = +3

Query: 189 GYDEXKMNE-AVDILEEWLKKQNHFLKKDFPRIYLETNIIGSKGSIERTKSKLDKLFALR 365
           GY E K+++  +++ ++ LKKQ+ F K    +     ++I    S+++  S + K    +
Sbjct: 30  GYVEDKLHKNTLEMCQKILKKQHGFQKTQENQNKFIEHLILDLESVKKETSDMKKQQETQ 89

Query: 366 TVLRKFYEFNDIRNEFKNLFSCSYILAMPKLTKENNRLFVLKV 494
            + R+    ++++ EF+ + +    L    +  + N   +LK+
Sbjct: 90  ILKRQDEYHDEMKQEFQKIQATQNKLIEDLMNSDKNLEMMLKI 132


>AF000262-10|AAN60530.1|  350|Caenorhabditis elegans Twik family of
           potassium channelsprotein 37 protein.
          Length = 350

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
 Frame = +3

Query: 252 NHFLKKDFPRIYLETNIIGSKGSI-----ERTKSKLDKLFALRTVLRKFYEFNDI 401
           N F+K+   +   ET  +  K SI      +++++  K   LRT+LRK  +FN I
Sbjct: 10  NKFIKRQMEKSSPETQHLVRKQSILKFVERKSRAERPKPTKLRTILRKIRKFNTI 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,352,975
Number of Sequences: 27780
Number of extensions: 294377
Number of successful extensions: 824
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)