Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_G16
         (759 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g63770.2 68414.m07216 peptidase M1 family protein similar to ...    32   0.48 
At1g63770.1 68414.m07217 peptidase M1 family protein similar to ...    32   0.48 
At1g78070.2 68414.m09098 WD-40 repeat family protein contains Pf...    28   7.7  
At1g78070.1 68414.m09097 WD-40 repeat family protein contains Pf...    28   7.7  

>At1g63770.2 68414.m07216 peptidase M1 family protein similar to
           SP|P04825 Aminopeptidase N (EC 3.4.11.2)
           (Alpha-aminoacylpeptide hydrolase) {Escherichia coli};
           contains Pfam profile PF01433: Peptidase family M1
          Length = 945

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
 Frame = +3

Query: 384 YEFNDIRNEFKNLFSCSYILAMPKLTKENNRLFVLKVIGNEFF-----DKVPYLDYYKIM 548
           +    + N+  N+F+   +LA P+   + +   +L VIG+E+F     ++V   D++++ 
Sbjct: 354 FNMGAMENKSLNIFNSKLVLASPETATDADYAAILGVIGHEYFHNWTGNRVTCRDWFQLS 413

Query: 549 IAY-VEYFRMYDYSD--GYRVVIDYRDINIMNI 638
           +   +  FR  ++S   G R V    D++ + I
Sbjct: 414 LKEGLTVFRDQEFSSDMGSRTVKRIADVSKLRI 446


>At1g63770.1 68414.m07217 peptidase M1 family protein similar to
           SP|P04825 Aminopeptidase N (EC 3.4.11.2)
           (Alpha-aminoacylpeptide hydrolase) {Escherichia coli};
           contains Pfam profile PF01433: Peptidase family M1
          Length = 918

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
 Frame = +3

Query: 384 YEFNDIRNEFKNLFSCSYILAMPKLTKENNRLFVLKVIGNEFF-----DKVPYLDYYKIM 548
           +    + N+  N+F+   +LA P+   + +   +L VIG+E+F     ++V   D++++ 
Sbjct: 354 FNMGAMENKSLNIFNSKLVLASPETATDADYAAILGVIGHEYFHNWTGNRVTCRDWFQLS 413

Query: 549 IAY-VEYFRMYDYSD--GYRVVIDYRDINIMNI 638
           +   +  FR  ++S   G R V    D++ + I
Sbjct: 414 LKEGLTVFRDQEFSSDMGSRTVKRIADVSKLRI 446


>At1g78070.2 68414.m09098 WD-40 repeat family protein contains Pfam
           profile PF00400: WD domain, G-beta repeat
          Length = 447

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 59  FFINKTVXFHLGLSLKPSRNVFNVXTKAVSSSRRHGAAXTNVVRLR 196
           +F+N     H    L+  + V NV    V S ++HG+   +V R++
Sbjct: 149 YFMNNYSLMHWSSLLQRGKEVLNVAKPIVPSMKQHGSLSQSVSRVQ 194


>At1g78070.1 68414.m09097 WD-40 repeat family protein contains Pfam
           profile PF00400: WD domain, G-beta repeat
          Length = 229

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 59  FFINKTVXFHLGLSLKPSRNVFNVXTKAVSSSRRHGAAXTNVVRLR 196
           +F+N     H    L+  + V NV    V S ++HG+   +V R++
Sbjct: 149 YFMNNYSLMHWSSLLQRGKEVLNVAKPIVPSMKQHGSLSQSVSRVQ 194


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,328,772
Number of Sequences: 28952
Number of extensions: 267698
Number of successful extensions: 722
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)