Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_G14
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc...    82   4e-17
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch...    82   5e-17
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    27   1.1  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    27   1.1  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    27   1.4  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    26   2.5  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    25   4.4  
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc...    25   5.8  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    25   5.8  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    25   5.8  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    25   7.7  

>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 99

 Score = 82.2 bits (194), Expect = 4e-17
 Identities = 42/84 (50%), Positives = 57/84 (67%)
 Frame = +1

Query: 127 KGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDXRALKFLK 306
           K +T + +  RP+R KG  +K + FVR +VREV G A YE+R MEL++ S+D RA K  K
Sbjct: 13  KVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72

Query: 307 RRLGTHIRAKRKREELSNVLAQMR 378
           +RLGT  RAK K EEL++V+   R
Sbjct: 73  KRLGTLKRAKGKIEELTSVIQSSR 96


>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 99

 Score = 81.8 bits (193), Expect = 5e-17
 Identities = 42/84 (50%), Positives = 57/84 (67%)
 Frame = +1

Query: 127 KGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDXRALKFLK 306
           K +T + +  RP+R KG  +K + FVR +VREV G A YE+R MEL++ S+D RA K  K
Sbjct: 13  KTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72

Query: 307 RRLGTHIRAKRKREELSNVLAQMR 378
           +RLGT  RAK K EEL++V+   R
Sbjct: 73  KRLGTLKRAKGKIEELTSVIQSSR 96


>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 341 SVKNLATCSLR*GRQPPRLITITI 412
           SVKNL   SL+    PPRLIT+ +
Sbjct: 421 SVKNLKLLSLKYDVTPPRLITVCV 444


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 223  VVGHAQYEKRAMELLKVSKDXRALKFLKRRLGTHIRAK-RKREELSNVLAQMR 378
            ++ HA      ++ L+VSKD       KRR+ THI  +  +R  LS V  Q+R
Sbjct: 1119 LINHADILSSILDYLQVSKD-------KRRMATHILGQINQRLTLSQVRNQLR 1164


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 405 MVMSLGGCLPHLSEHVAKFFTLPLGADVCAQSSLQELQSTXV 280
           +V SL G    L +  A+FFT PL ++VCA + +   +   +
Sbjct: 544 IVKSLNGEYIALEKIEAQFFTSPLVSNVCAYADVNHAKPVVI 585


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 990

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
 Frame = +3

Query: 213  STRSCRTRSI*EEGY---GVT*GVKRXACSEVLEATI 314
            +TR+C T+S+ EEG+    V+  +KR   +++L+A I
Sbjct: 928  ATRACLTQSLEEEGFPSRNVSNEIKRRFLTDLLKARI 964


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -3

Query: 411 MVMVMSLGGCLPHLSEHVAKFFTLPLGA-DVCAQSSLQELQSTXVF*HLK*LHSPLLILS 235
           M +   +GG +   SEHV K F L      V  ++   ++ S  +   LK + S LL ++
Sbjct: 121 MELSKKIGGLIAEQSEHVEKAFNLLRQVLSVALKAQKPDMDSPELLEFLKPIQSELLTIT 180


>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
           scaffold protein Isu1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 192

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 157 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 261
           RPA L+ L+T  SKFV  +    V    Y K  ++
Sbjct: 27  RPANLQFLKTNSSKFVPQVTAN-VSRRMYHKNVLD 60


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 13/39 (33%), Positives = 27/39 (69%)
 Frame = +1

Query: 259 ELLKVSKDXRALKFLKRRLGTHIRAKRKREELSNVLAQM 375
           +LLK ++   + K  K+RL  +I  K K+EE+++++A++
Sbjct: 75  QLLKENEGSISSK-KKKRLDKYIENKLKKEEVASLIAKL 112


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 272 TLSNSIALFSY*ACPTTSRTKSRTNLECF 186
           T+++S  LF+  A   T+ TKS  N+EC+
Sbjct: 850 TINHSRTLFATHAHQLTNLTKSFKNVECY 878


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 135 DTLAASGYFSCFVAFSQAYCDFKTRSHDFG 46
           D   A  + S F AFSQ Y  +  +S+DFG
Sbjct: 319 DLRLACCFESHFFAFSQHYPRYLEQSNDFG 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,588,034
Number of Sequences: 5004
Number of extensions: 28050
Number of successful extensions: 71
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)