Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_G14
         (470 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S ...    98   2e-21
At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)            97   4e-21
At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S ...    97   5e-21
At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S ...    77   5e-15
At1g34590.1 68414.m04299 hypothetical protein                          29   1.2  
At5g28430.1 68418.m03453 hypothetical protein                          27   6.4  
At4g06603.1 68417.m01028 expressed protein                             27   6.4  
At3g60930.1 68416.m06816 expressed protein                             27   6.4  

>At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S
           RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
           swissprot:Q92365
          Length = 112

 Score = 98.3 bits (234), Expect = 2e-21
 Identities = 53/100 (53%), Positives = 66/100 (66%)
 Frame = +1

Query: 79  VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 258
           VGL KGH  T+          + +  RP   KG  +K + F+R+L++EV G A YEKR  
Sbjct: 12  VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61

Query: 259 ELLKVSKDXRALKFLKRRLGTHIRAKRKREELSNVLAQMR 378
           ELLKV KD RALK  KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 62  ELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101


>At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)
          Length = 113

 Score = 97.5 bits (232), Expect = 4e-21
 Identities = 54/100 (54%), Positives = 65/100 (65%)
 Frame = +1

Query: 79  VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 258
           VGL KGH  T+          + +  RP   KG  +K + F+R L+REV G A YEKR  
Sbjct: 12  VGLNKGHVVTR----------RELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRIT 61

Query: 259 ELLKVSKDXRALKFLKRRLGTHIRAKRKREELSNVLAQMR 378
           ELLKV KD RALK  KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 62  ELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101


>At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S
           ribosomal protein L36, Arabidopsis thaliana,
           EMBL:AC004684
          Length = 108

 Score = 97.1 bits (231), Expect = 5e-21
 Identities = 54/100 (54%), Positives = 65/100 (65%)
 Frame = +1

Query: 79  VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 258
           VGL KGH  TK          +    RP   KG  +K + F+R+L++EV G A YEKR  
Sbjct: 8   VGLNKGHVVTK----------REQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 57

Query: 259 ELLKVSKDXRALKFLKRRLGTHIRAKRKREELSNVLAQMR 378
           ELLKV KD RALK  KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 58  ELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 97


>At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S
           RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
           swissprot:Q92365
          Length = 103

 Score = 77.4 bits (182), Expect = 5e-15
 Identities = 47/100 (47%), Positives = 61/100 (61%)
 Frame = +1

Query: 79  VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 258
           VGL KGH  T+          + +  RP   KG  +K + F+R+L++EV G A YEKR  
Sbjct: 12  VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61

Query: 259 ELLKVSKDXRALKFLKRRLGTHIRAKRKREELSNVLAQMR 378
           ELLKV+         KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 62  ELLKVA---------KRKLGTHKRAKRKREEMSSVLRKMR 92


>At1g34590.1 68414.m04299 hypothetical protein
          Length = 820

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +1

Query: 28  FLRICQSEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 168
           F+   + ++ AP  E A     GH++ +  A + G+TD+A  + PA+
Sbjct: 765 FIAELKDDLKAPALESAPLSPGGHRSVESVADKAGVTDQAGSLLPAK 811


>At5g28430.1 68418.m03453 hypothetical protein
          Length = 486

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 28  FLRICQSEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 168
           F+   + ++ AP  E A     GH++ +  A   GITD+A  + PA+
Sbjct: 431 FMAELKDDLKAPAPEPAPLSPGGHRSVESLADEAGITDQAGSLLPAK 477


>At4g06603.1 68417.m01028 expressed protein
          Length = 786

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 28  FLRICQSEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 168
           F+   + ++ AP  E A     GH++ +  A   GITD+A  + PA+
Sbjct: 731 FMAELKDDLKAPAPEPAPLSPGGHRSVESLADEAGITDQAGSLLPAK 777


>At3g60930.1 68416.m06816 expressed protein
          Length = 798

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 28  FLRICQSEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 168
           F+   + ++ AP  E A     GH++ +  A   GITD+A  + PA+
Sbjct: 743 FMSELKDDLKAPAPEPAPLSPGGHRSVESLADEAGITDQAGSLLPAK 789


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,449,705
Number of Sequences: 28952
Number of extensions: 152963
Number of successful extensions: 379
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)