Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_G12
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   1.7  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    26   3.8  
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   6.7  
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    25   8.8  

>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = -2

Query: 454 YFKILRISKLTIHLQK*ENSSDFKIMSIKWLKIV--SHLQFD 335
           +F    I K  IHL     S++ +I   KW  +   +HL FD
Sbjct: 117 HFNPSEIEKSLIHLSTTSKSAETRIQCFKWFVLAHNAHLSFD 158


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = -3

Query: 339 LTFKWFIRFHVLFRSLTQQSCICIKLNKSDVI*FSHFSESEPILNV 202
           +TF W  R   L   + +  C  ++  + ++  F H + S P+  V
Sbjct: 446 ITFVWSARSSALLNIVHKSLCEAVRYTEMNINIFCHLTNSYPVEEV 491


>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 128

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/41 (31%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
 Frame = +3

Query: 363 NHLIDII--LKSLE-FSYFCKCIVNLEILKILK*IHMYCIT 476
           N+++DI+  +K+   FS+FC   +NL ++ I+  + +Y I+
Sbjct: 44  NYVVDIVCYVKNYNGFSFFCWVFLNLGVIGIIITVIIYYIS 84


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 351 VIYSLTFKWFIRFHVLFRSL 292
           +IYS+ + WF  F +LF S+
Sbjct: 329 LIYSILYLWFEAFPILFTSV 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,125,340
Number of Sequences: 5004
Number of extensions: 37116
Number of successful extensions: 59
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)